Wall clock time and date at job start Tue Mar 31 2020 17:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.86876 * 2 1 4 4 C 1.54324 * 109.88066 * 121.01367 * 2 1 3 5 5 C 1.55161 * 102.94048 * 97.22609 * 4 2 1 6 6 C 1.54907 * 101.61459 * 35.48318 * 5 4 2 7 7 N 1.47019 * 109.88243 * 238.82358 * 2 1 3 8 8 C 1.34774 * 125.64879 * 59.48634 * 7 2 1 9 9 O 1.21345 * 120.00166 * 359.97438 * 8 7 2 10 10 C 1.49447 * 120.00115 * 179.97438 * 8 7 2 11 11 O 1.21357 * 119.99985 * 0.02562 * 10 8 7 12 12 N 1.34781 * 120.00450 * 180.02562 * 10 8 7 13 13 C 1.46498 * 120.00190 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.46845 * 180.02562 * 13 12 10 15 15 C 1.38303 * 119.92732 * 269.72443 * 14 13 12 16 16 C 1.38101 * 120.06649 * 179.72701 * 15 14 13 17 17 C 1.38871 * 119.92875 * 0.55079 * 16 15 14 18 18 O 1.35756 * 120.07011 * 179.75081 * 17 16 15 19 19 C 1.34822 * 117.00136 * 174.44014 * 18 17 16 20 20 H 1.07997 * 120.00387 * 5.05340 * 19 18 17 21 21 C 1.38657 * 120.00082 * 185.05466 * 19 18 17 22 22 N 1.31559 * 119.99782 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00333 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47231 * 59.99963 * 23 21 19 25 25 H 1.48503 * 109.47414 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47343 * 300.00144 * 23 21 19 27 27 C 1.38880 * 119.86529 * 359.72330 * 17 16 15 28 28 C 1.38101 * 119.93025 * 0.02562 * 27 17 16 29 29 H 1.08994 * 109.47322 * 298.98692 * 1 2 3 30 30 H 1.09007 * 109.46773 * 58.98490 * 1 2 3 31 31 H 1.08996 * 109.46903 * 178.98325 * 1 2 3 32 32 H 1.09002 * 110.72090 * 338.86598 * 4 2 1 33 33 H 1.08997 * 110.71949 * 215.58756 * 4 2 1 34 34 H 1.08998 * 111.00443 * 153.57787 * 5 4 2 35 35 H 1.09000 * 111.00468 * 277.38878 * 5 4 2 36 36 H 1.08996 * 110.37089 * 81.84823 * 6 5 4 37 37 H 1.08997 * 110.36475 * 204.17110 * 6 5 4 38 38 H 0.96995 * 119.99445 * 0.02562 * 12 10 8 39 39 H 1.09003 * 109.47179 * 299.99533 * 13 12 10 40 40 H 1.08994 * 109.47252 * 59.99482 * 13 12 10 41 41 H 1.08003 * 119.96515 * 359.97438 * 15 14 13 42 42 H 1.08003 * 120.03036 * 180.26997 * 16 15 14 43 43 H 0.96999 * 120.00574 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03726 * 180.02562 * 27 17 16 45 45 H 1.08000 * 119.96557 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2438 5 6 2.3519 -2.1685 0.6954 6 6 2.8565 -1.8517 -0.7345 7 7 2.0301 -0.7157 -1.1829 8 6 1.7743 -0.3888 -2.4651 9 8 1.0759 0.5706 -2.7189 10 6 2.3508 -1.2077 -3.5744 11 8 3.0488 -2.1674 -3.3206 12 7 2.0954 -0.8805 -4.8567 13 6 2.6601 -1.6836 -5.9440 14 6 2.2272 -1.1105 -7.2689 15 6 1.0604 -1.5541 -7.8643 16 6 0.6580 -1.0268 -9.0757 17 6 1.4323 -0.0585 -9.7013 18 8 1.0421 0.4581 -10.8945 19 6 1.7760 1.4742 -11.3910 20 1 2.6772 1.7871 -10.8849 21 6 1.3737 2.1176 -12.5515 22 7 0.2761 1.7362 -13.1684 23 14 2.3901 3.5259 -13.2391 24 1 3.7583 3.0416 -13.5533 25 1 1.7509 4.0394 -14.4772 26 1 2.4697 4.6160 -12.2337 27 6 2.6064 0.3807 -9.1035 28 6 3.0007 -0.1467 -7.8896 29 1 -0.3633 0.4980 0.8989 30 1 -0.3633 0.5296 -0.8808 31 1 -0.3633 -1.0275 -0.0182 32 1 1.2917 -0.7862 2.0212 33 1 2.9657 -0.2809 1.6187 34 1 3.1270 -2.6601 1.2834 35 1 1.4453 -2.7729 0.6649 36 1 3.9089 -1.5690 -0.7114 37 1 2.7080 -2.7111 -1.3882 38 1 1.5378 -0.1132 -5.0595 39 1 3.7481 -1.6680 -5.8800 40 1 2.3058 -2.7108 -5.8588 41 1 0.4612 -2.3107 -7.3796 42 1 -0.2555 -1.3705 -9.5380 43 1 -0.0056 2.1864 -13.9801 44 1 3.2104 1.1339 -9.5874 45 1 3.9138 0.1942 -7.4244 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322723882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:59 Heat of formation + Delta-G solvation = -67.705508 kcal Electronic energy + Delta-G solvation = -27309.906615 eV Core-core repulsion = 23293.254339 eV Total energy + Delta-G solvation = -4016.652276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98199 -39.40265 -38.89471 -37.74026 -36.91204 -34.62091 -32.39343 -32.15750 -31.48975 -30.32639 -30.07724 -26.57018 -26.17603 -25.39588 -24.25056 -22.38787 -22.07815 -21.05046 -20.69713 -19.66614 -18.14398 -18.03822 -17.05396 -17.00813 -16.49518 -15.79982 -15.72215 -14.94688 -14.84363 -14.59443 -14.27936 -14.08406 -13.87653 -13.78932 -13.71667 -13.43530 -13.41050 -12.97071 -12.82062 -12.78683 -12.58339 -12.34519 -12.15409 -11.87737 -11.70577 -11.39001 -11.30220 -11.09686 -11.02900 -10.96218 -10.83519 -10.73080 -10.50807 -9.58571 -9.44939 -9.21558 -9.00476 -8.91292 -8.30196 -7.35311 -6.53583 -4.12441 1.35593 1.88935 2.11971 2.35590 3.08966 3.09943 3.13059 3.13440 3.44374 3.90194 4.10779 4.18494 4.38333 4.47925 4.54703 4.77998 4.94879 5.00397 5.01926 5.11187 5.18628 5.19003 5.32351 5.34213 5.42587 5.49519 5.53946 5.62380 5.68316 5.74498 5.75211 5.78812 5.86537 6.05269 6.10579 6.27380 6.32129 6.57515 6.78136 6.91059 6.96696 7.10926 7.22814 7.25778 7.33811 7.63987 7.69553 7.90841 7.94964 8.91440 9.59067 10.63689 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.001976 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.636470 B =14165.703727 C =14524.107003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 H 0.079 0.921 4 C -0.129 4.129 5 C -0.136 4.136 6 C 0.096 3.904 7 N -0.590 5.590 8 C 0.520 3.480 9 O -0.517 6.517 10 C 0.505 3.495 11 O -0.526 6.526 12 N -0.688 5.688 13 C 0.178 3.822 14 C -0.220 4.220 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.162 3.838 18 O -0.172 6.172 19 C -0.394 4.394 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.943 3.057 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.237 4.237 28 C -0.048 4.048 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.414 0.586 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.272 0.728 44 H 0.129 0.871 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -5.944 25.893 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.028 3.972 3 H 0.097 0.903 4 C -0.167 4.167 5 C -0.174 4.174 6 C -0.026 4.026 7 N -0.325 5.325 8 C 0.303 3.697 9 O -0.393 6.393 10 C 0.285 3.715 11 O -0.404 6.404 12 N -0.340 5.340 13 C 0.057 3.943 14 C -0.221 4.221 15 C -0.071 4.071 16 C -0.214 4.214 17 C 0.107 3.893 18 O -0.074 6.074 19 C -0.470 4.470 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.492 5.492 23 Si 0.767 3.233 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.256 4.256 28 C -0.067 4.067 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.999 -6.073 25.426 26.446 hybrid contribution 0.319 1.128 -0.484 1.268 sum 4.318 -4.945 24.943 25.792 Atomic orbital electron populations 1.22164 0.94288 1.02549 1.03276 1.21680 0.95121 0.96403 0.83963 0.90275 1.22735 1.01980 0.95682 0.96317 1.22853 1.02207 0.96808 0.95562 1.22676 0.94633 0.89804 0.95451 1.48378 1.49562 1.30381 1.04229 1.19973 0.81780 0.85122 0.82808 1.90769 1.37383 1.27988 1.83131 1.19998 0.82055 0.85176 0.84290 1.90694 1.37869 1.28251 1.83587 1.46250 1.50884 1.32505 1.04372 1.20136 0.98005 0.93799 0.82372 1.19135 0.99872 1.05408 0.97732 1.20529 0.94752 0.97667 0.94125 1.20213 1.01900 1.02019 0.97303 1.19446 0.91934 0.92024 0.85908 1.83977 1.50893 1.44908 1.27605 1.21316 1.06943 1.09829 1.08903 0.88928 1.25328 0.96727 0.98607 0.95803 1.70025 1.21533 1.39961 1.17730 0.85755 0.79138 0.79855 0.78564 1.19416 1.20198 1.19393 1.21155 0.99690 1.06440 0.98343 1.20638 0.97643 0.94250 0.94157 0.91479 0.90863 0.92383 0.89666 0.90378 0.89600 0.90524 0.90934 0.87967 0.74912 0.90951 0.90906 0.86895 0.86289 0.91792 0.85346 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.05 37.16 0.34 -1.03 16 2 C 0.13 1.09 3.50 -66.95 -0.23 0.86 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -0.69 6.49 -24.89 -0.16 -0.85 16 5 C -0.14 -0.76 7.08 -24.58 -0.17 -0.93 16 6 C 0.10 0.82 6.06 -2.51 -0.02 0.80 16 7 N -0.59 -6.19 3.08 -163.49 -0.50 -6.69 16 8 C 0.52 6.81 7.69 -11.59 -0.09 6.72 16 9 O -0.52 -7.86 15.38 5.50 0.08 -7.78 16 10 C 0.50 6.80 7.86 -11.58 -0.09 6.71 16 11 O -0.53 -7.55 13.78 5.49 0.08 -7.48 16 12 N -0.69 -9.19 5.54 -61.91 -0.34 -9.54 16 13 C 0.18 2.41 5.80 -5.19 -0.03 2.38 16 14 C -0.22 -3.51 5.25 -104.58 -0.55 -4.06 16 15 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 16 C -0.20 -3.94 9.99 -39.40 -0.39 -4.34 16 17 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 18 O -0.17 -4.77 9.76 0.05 0.00 -4.77 16 19 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 20 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -24.69 13.67 55.48 0.76 -23.94 16 23 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.24 -4.93 9.17 -39.39 -0.36 -5.29 16 28 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.80 6.76 -51.92 -0.35 0.45 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.35 7.83 -51.93 -0.41 -0.06 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.01 6.16 -51.93 -0.32 0.69 16 38 H 0.41 5.64 7.94 -40.82 -0.32 5.32 16 39 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 42 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 45 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -31.19 376.21 -8.05 -39.24 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.17 Total: 7.63 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.59 Total: -7.44 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.09 Total: -40.16 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.16 Total: -20.02 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.19 -8.05 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322723882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.470 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds