Wall clock time and date at job start Tue Mar 31 2020 17:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.86876 * 2 1 4 4 C 1.54324 * 109.88066 * 121.01367 * 2 1 3 5 5 C 1.55161 * 102.94048 * 97.22609 * 4 2 1 6 6 C 1.54907 * 101.61459 * 35.48318 * 5 4 2 7 7 N 1.47019 * 109.88243 * 238.82358 * 2 1 3 8 8 C 1.34774 * 125.64879 * 59.48634 * 7 2 1 9 9 O 1.21345 * 120.00166 * 359.97438 * 8 7 2 10 10 C 1.49447 * 120.00115 * 179.97438 * 8 7 2 11 11 O 1.21357 * 119.99985 * 0.02562 * 10 8 7 12 12 N 1.34781 * 120.00450 * 180.02562 * 10 8 7 13 13 C 1.46498 * 120.00190 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.46845 * 180.02562 * 13 12 10 15 15 C 1.38303 * 119.92732 * 269.72443 * 14 13 12 16 16 C 1.38101 * 120.06649 * 179.72701 * 15 14 13 17 17 C 1.38871 * 119.92875 * 0.55079 * 16 15 14 18 18 O 1.35756 * 120.07011 * 179.75081 * 17 16 15 19 19 C 1.34822 * 117.00136 * 174.44014 * 18 17 16 20 20 H 1.07997 * 120.00387 * 5.05340 * 19 18 17 21 21 C 1.38657 * 120.00082 * 185.05466 * 19 18 17 22 22 N 1.31559 * 119.99782 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00333 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47231 * 59.99963 * 23 21 19 25 25 H 1.48503 * 109.47414 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47343 * 300.00144 * 23 21 19 27 27 C 1.38880 * 119.86529 * 359.72330 * 17 16 15 28 28 C 1.38101 * 119.93025 * 0.02562 * 27 17 16 29 29 H 1.08994 * 109.47322 * 298.98692 * 1 2 3 30 30 H 1.09007 * 109.46773 * 58.98490 * 1 2 3 31 31 H 1.08996 * 109.46903 * 178.98325 * 1 2 3 32 32 H 1.09002 * 110.72090 * 338.86598 * 4 2 1 33 33 H 1.08997 * 110.71949 * 215.58756 * 4 2 1 34 34 H 1.08998 * 111.00443 * 153.57787 * 5 4 2 35 35 H 1.09000 * 111.00468 * 277.38878 * 5 4 2 36 36 H 1.08996 * 110.37089 * 81.84823 * 6 5 4 37 37 H 1.08997 * 110.36475 * 204.17110 * 6 5 4 38 38 H 0.96995 * 119.99445 * 0.02562 * 12 10 8 39 39 H 1.09003 * 109.47179 * 299.99533 * 13 12 10 40 40 H 1.08994 * 109.47252 * 59.99482 * 13 12 10 41 41 H 1.08003 * 119.96515 * 359.97438 * 15 14 13 42 42 H 1.08003 * 120.03036 * 180.26997 * 16 15 14 43 43 H 0.96999 * 120.00574 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03726 * 180.02562 * 27 17 16 45 45 H 1.08000 * 119.96557 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 1.2438 5 6 2.3519 -2.1685 0.6954 6 6 2.8565 -1.8517 -0.7345 7 7 2.0301 -0.7157 -1.1829 8 6 1.7743 -0.3888 -2.4651 9 8 1.0759 0.5706 -2.7189 10 6 2.3508 -1.2077 -3.5744 11 8 3.0488 -2.1674 -3.3206 12 7 2.0954 -0.8805 -4.8567 13 6 2.6601 -1.6836 -5.9440 14 6 2.2272 -1.1105 -7.2689 15 6 1.0604 -1.5541 -7.8643 16 6 0.6580 -1.0268 -9.0757 17 6 1.4323 -0.0585 -9.7013 18 8 1.0421 0.4581 -10.8945 19 6 1.7760 1.4742 -11.3910 20 1 2.6772 1.7871 -10.8849 21 6 1.3737 2.1176 -12.5515 22 7 0.2761 1.7362 -13.1684 23 14 2.3901 3.5259 -13.2391 24 1 3.7583 3.0416 -13.5533 25 1 1.7509 4.0394 -14.4772 26 1 2.4697 4.6160 -12.2337 27 6 2.6064 0.3807 -9.1035 28 6 3.0007 -0.1467 -7.8896 29 1 -0.3633 0.4980 0.8989 30 1 -0.3633 0.5296 -0.8808 31 1 -0.3633 -1.0275 -0.0182 32 1 1.2917 -0.7862 2.0212 33 1 2.9657 -0.2809 1.6187 34 1 3.1270 -2.6601 1.2834 35 1 1.4453 -2.7729 0.6649 36 1 3.9089 -1.5690 -0.7114 37 1 2.7080 -2.7111 -1.3882 38 1 1.5378 -0.1132 -5.0595 39 1 3.7481 -1.6680 -5.8800 40 1 2.3058 -2.7108 -5.8588 41 1 0.4612 -2.3107 -7.3796 42 1 -0.2555 -1.3705 -9.5380 43 1 -0.0056 2.1864 -13.9801 44 1 3.2104 1.1339 -9.5874 45 1 3.9138 0.1942 -7.4244 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322723882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:54 Heat of formation + Delta-G solvation = -88.236806 kcal Electronic energy + Delta-G solvation = -27310.796919 eV Core-core repulsion = 23293.254339 eV Total energy + Delta-G solvation = -4017.542580 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -41.93284 -40.88476 -40.02740 -38.65109 -38.51403 -35.84963 -34.29873 -32.92140 -32.10211 -31.87639 -31.53059 -27.97772 -27.08794 -26.76540 -25.36817 -23.67686 -23.18088 -22.16873 -21.79613 -20.58377 -19.88995 -19.09031 -18.73906 -18.01036 -17.36154 -16.84351 -16.69428 -16.46055 -16.23126 -16.01101 -15.57450 -15.44791 -15.32500 -14.80967 -14.77680 -14.44606 -14.40751 -14.22290 -14.07811 -13.68872 -13.55081 -13.35991 -13.27192 -13.05976 -12.96741 -12.72226 -12.51527 -12.41101 -12.27770 -12.15788 -11.93842 -11.70537 -11.52068 -11.22782 -10.84092 -10.58856 -10.30003 -9.85544 -9.83157 -9.04393 -8.49489 -6.17916 0.32274 0.46642 0.55882 1.30853 1.34804 1.45818 1.50781 2.10415 2.16265 2.46103 2.82932 3.12821 3.33838 3.46587 3.63654 3.67896 3.81061 3.98607 3.99972 4.14747 4.21905 4.33446 4.41381 4.45206 4.53667 4.58563 4.65434 4.77525 4.81267 4.87752 4.95062 5.01155 5.04106 5.12045 5.12120 5.14247 5.23721 5.24035 5.28338 5.40576 5.49045 5.66936 5.70718 5.99714 6.01412 6.13934 6.23893 6.62178 6.90732 6.94931 7.73675 8.72971 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.001976 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.636470 B =14165.703727 C =14524.107003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.127 4.127 6 C 0.090 3.910 7 N -0.586 5.586 8 C 0.514 3.486 9 O -0.548 6.548 10 C 0.508 3.492 11 O -0.534 6.534 12 N -0.688 5.688 13 C 0.184 3.816 14 C -0.188 4.188 15 C -0.042 4.042 16 C -0.206 4.206 17 C 0.123 3.877 18 O -0.228 6.228 19 C -0.415 4.415 20 H 0.104 0.896 21 C -0.022 4.022 22 N -0.918 5.918 23 Si 1.018 2.982 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.258 1.258 27 C -0.245 4.245 28 C -0.044 4.044 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -6.795 29.808 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.165 4.165 6 C -0.032 4.032 7 N -0.320 5.320 8 C 0.297 3.703 9 O -0.426 6.426 10 C 0.289 3.711 11 O -0.412 6.412 12 N -0.340 5.340 13 C 0.062 3.938 14 C -0.190 4.190 15 C -0.061 4.061 16 C -0.225 4.225 17 C 0.072 3.928 18 O -0.134 6.134 19 C -0.491 4.491 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.182 1.182 27 C -0.264 4.264 28 C -0.063 4.063 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.250 0.750 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.167 0.833 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.885 -6.974 29.432 30.815 hybrid contribution -0.203 1.151 -1.287 1.739 sum 5.682 -5.823 28.145 29.297 Atomic orbital electron populations 1.22117 0.94339 1.02398 1.02923 1.21957 0.95184 0.96572 0.84477 0.90846 1.22747 1.03038 0.94829 0.95027 1.22856 1.02905 0.97139 0.93618 1.22830 0.94726 0.88535 0.97065 1.48576 1.48760 1.30676 1.03979 1.19926 0.81834 0.84893 0.83665 1.90759 1.38932 1.29246 1.83674 1.20047 0.81776 0.84996 0.84300 1.90699 1.38196 1.28536 1.83721 1.46114 1.50969 1.32483 1.04422 1.20129 0.98830 0.94198 0.80636 1.19484 0.98295 1.03020 0.98161 1.20914 0.95111 0.97518 0.92534 1.20462 1.01834 1.01724 0.98509 1.20014 0.93631 0.93319 0.85826 1.83947 1.52664 1.46605 1.30165 1.21797 1.07507 1.10282 1.09510 0.87909 1.26602 0.98032 1.01434 0.95938 1.70172 1.24158 1.42381 1.18847 0.84652 0.77618 0.76137 0.77865 1.18062 1.19672 1.18232 1.21258 0.98957 1.06637 0.99598 1.20973 0.98797 0.93799 0.92724 0.89202 0.93941 0.92256 0.87721 0.89069 0.87286 0.90383 0.90489 0.89384 0.74983 0.89655 0.89382 0.83291 0.86602 0.91764 0.86093 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.05 71.98 0.65 -1.76 16 2 C 0.12 1.76 3.50 45.34 0.16 1.91 16 3 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.12 -0.83 6.49 31.78 0.21 -0.63 16 5 C -0.13 -0.97 7.08 31.99 0.23 -0.75 16 6 C 0.09 1.31 6.06 86.85 0.53 1.84 16 7 N -0.59 -11.32 3.08 -789.52 -2.43 -13.76 16 8 C 0.51 12.90 7.69 87.27 0.67 13.57 16 9 O -0.55 -16.48 15.38 -3.23 -0.05 -16.53 16 10 C 0.51 12.66 7.86 87.27 0.69 13.35 16 11 O -0.53 -14.00 13.78 -3.27 -0.05 -14.04 16 12 N -0.69 -16.60 5.54 -468.13 -2.59 -19.19 16 13 C 0.18 4.26 5.80 85.63 0.50 4.76 16 14 C -0.19 -5.46 5.25 -19.83 -0.10 -5.57 16 15 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 16 C -0.21 -8.43 9.99 22.39 0.22 -8.20 16 17 C 0.12 5.97 6.65 22.58 0.15 6.12 16 18 O -0.23 -13.51 9.76 -22.73 -0.22 -13.73 16 19 C -0.42 -23.85 9.49 67.92 0.64 -23.20 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 21 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 22 N -0.92 -55.95 13.67 21.61 0.30 -55.65 16 23 Si 1.02 42.48 29.55 68.60 2.03 44.50 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 C -0.25 -10.27 9.17 22.39 0.21 -10.07 16 28 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.91 6.76 -2.38 -0.02 0.90 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.40 7.83 -2.39 -0.02 0.38 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.56 6.16 -2.39 -0.01 1.55 16 38 H 0.41 10.42 7.94 -92.71 -0.74 9.69 16 39 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 40 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 41 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 42 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.12 5.17 5.64 -2.91 -0.02 5.16 16 45 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -73.44 376.21 2.91 -70.53 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.29 Total: 29.62 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.64 Total: -11.75 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -4.73 Total: -88.60 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.32 Total: -44.31 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -73.44 2.91 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322723882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.702 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds