Wall clock time and date at job start Tue Mar 31 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.87643 * 2 1 4 4 C 1.54327 * 109.87801 * 238.82941 * 2 1 3 5 5 C 1.55162 * 102.94165 * 262.77480 * 4 2 1 6 6 C 1.55126 * 101.48343 * 324.33528 * 5 4 2 7 7 N 1.47020 * 109.87985 * 121.02266 * 2 1 3 8 8 C 1.34773 * 125.64784 * 300.43166 * 7 2 1 9 9 O 1.21355 * 120.00104 * 0.02562 * 8 7 2 10 10 C 1.49453 * 120.00002 * 180.02562 * 8 7 2 11 11 O 1.21345 * 119.99753 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99958 * 180.02562 * 10 8 7 13 13 C 1.46498 * 119.99927 * 180.02562 * 12 10 8 14 14 C 1.50694 * 109.47187 * 180.02562 * 13 12 10 15 15 C 1.38324 * 119.96840 * 90.00166 * 14 13 12 16 16 C 1.38276 * 120.14087 * 179.72548 * 15 14 13 17 17 C 1.38117 * 120.07028 * 359.97438 * 16 15 14 18 18 C 1.38860 * 119.92802 * 0.02562 * 17 16 15 19 19 O 1.35755 * 120.06631 * 179.97438 * 18 17 16 20 20 C 1.34827 * 116.99874 * 354.46320 * 19 18 17 21 21 H 1.07995 * 120.00373 * 5.06103 * 20 19 18 22 22 C 1.38658 * 119.99764 * 185.05543 * 20 19 18 23 23 N 1.31551 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99902 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47129 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47337 * 119.99933 * 24 22 20 27 27 H 1.48503 * 109.47178 * 240.00175 * 24 22 20 28 28 C 1.38080 * 119.96748 * 269.72515 * 14 13 12 29 29 H 1.08993 * 109.47133 * 300.43969 * 1 2 3 30 30 H 1.09003 * 109.46992 * 60.43526 * 1 2 3 31 31 H 1.08998 * 109.47320 * 180.42781 * 1 2 3 32 32 H 1.08996 * 110.72630 * 21.13976 * 4 2 1 33 33 H 1.09000 * 110.71932 * 144.41850 * 4 2 1 34 34 H 1.08996 * 111.00043 * 82.57414 * 5 4 2 35 35 H 1.08997 * 111.00263 * 206.39169 * 5 4 2 36 36 H 1.08994 * 110.50137 * 278.45246 * 6 5 4 37 37 H 1.09005 * 110.34027 * 156.05897 * 6 5 4 38 38 H 0.97001 * 119.99900 * 0.02562 * 12 10 8 39 39 H 1.09003 * 109.47082 * 59.99873 * 13 12 10 40 40 H 1.09003 * 109.46957 * 300.00251 * 13 12 10 41 41 H 1.08005 * 119.92658 * 359.69583 * 15 14 13 42 42 H 1.08004 * 119.96426 * 179.97438 * 16 15 14 43 43 H 1.08006 * 120.03392 * 179.97438 * 17 16 15 44 44 H 0.97003 * 119.99787 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.03291 * 0.27505 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2418 5 6 2.3518 -2.1705 -0.6896 6 6 2.8613 -1.8456 0.7391 7 7 2.0300 -0.7126 1.1848 8 6 1.7754 -0.3812 2.4662 9 8 1.0782 0.5798 2.7174 10 6 2.3517 -1.1973 3.5777 11 8 3.0491 -2.1580 3.3264 12 7 2.0967 -0.8663 4.8590 13 6 2.6620 -1.6659 5.9486 14 6 2.2284 -1.0898 7.2718 15 6 1.0590 -1.5284 7.8665 16 6 0.6607 -1.0063 9.0833 17 6 1.4302 -0.0451 9.7092 18 6 2.6046 0.3972 9.1149 19 8 3.3628 1.3422 9.7273 20 6 2.8635 1.8932 10.8521 21 1 1.9406 1.5214 11.2718 22 6 3.5352 2.9371 11.4699 23 7 4.6598 3.3896 10.9589 24 14 2.8439 3.6999 13.0286 25 1 1.5787 3.0146 13.3961 26 1 3.8266 3.5488 14.1317 27 1 2.5770 5.1423 12.7975 28 6 3.0017 -0.1288 7.8923 29 1 -0.3633 0.5206 0.8860 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3634 -1.0276 0.0077 32 1 1.2918 -0.7917 -2.0191 33 1 2.9656 -0.2854 -1.6179 34 1 1.4451 -2.7745 -0.6568 35 1 3.1265 -2.6638 -1.2766 36 1 3.9122 -1.5580 0.7134 37 1 2.7177 -2.7031 1.3967 38 1 1.5388 -0.0986 5.0598 39 1 3.7500 -1.6503 5.8841 40 1 2.3079 -2.6936 5.8666 41 1 0.4556 -2.2798 7.3790 42 1 -0.2531 -1.3504 9.5449 43 1 1.1183 0.3626 10.6595 44 1 5.1295 4.1201 11.3909 45 1 3.9147 0.2132 7.4276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323494185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:07 Heat of formation + Delta-G solvation = -66.587269 kcal Electronic energy + Delta-G solvation = -27462.127594 eV Core-core repulsion = 23445.523809 eV Total energy + Delta-G solvation = -4016.603785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96744 -39.41105 -38.87363 -37.71301 -36.85477 -34.71027 -32.34912 -32.14480 -31.45799 -30.89977 -29.19406 -26.77146 -26.15958 -25.38955 -24.48637 -22.42167 -21.73629 -21.05916 -20.85234 -19.69096 -18.26023 -17.55517 -17.02583 -16.96999 -16.44842 -15.79478 -15.68608 -15.16878 -14.92114 -14.55094 -14.39810 -14.17848 -13.89035 -13.78081 -13.67900 -13.44951 -13.38055 -12.94176 -12.76466 -12.57875 -12.45304 -12.32543 -12.21188 -11.85499 -11.69290 -11.39699 -11.27547 -11.07338 -11.00446 -10.95826 -10.85011 -10.71753 -10.46524 -9.59096 -9.41751 -9.23048 -8.98347 -8.90376 -8.27601 -7.34664 -6.49948 -4.09317 1.37236 1.76287 2.23081 2.34804 3.09431 3.11147 3.15059 3.16748 3.44956 3.92081 4.12792 4.20621 4.39646 4.50614 4.54847 4.80892 4.86838 4.97683 5.04364 5.05822 5.19968 5.21037 5.35312 5.45272 5.48363 5.52108 5.56604 5.66866 5.70821 5.76088 5.78000 5.84114 5.88736 6.05036 6.07547 6.22298 6.25592 6.52281 6.79054 6.95483 6.98509 7.14318 7.21224 7.26591 7.34286 7.64368 7.68738 7.94145 7.95233 8.95472 9.63776 10.67855 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.002123 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.574224 B =13186.904687 C =13620.969361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 H 0.080 0.920 4 C -0.129 4.129 5 C -0.136 4.136 6 C 0.096 3.904 7 N -0.590 5.590 8 C 0.521 3.479 9 O -0.516 6.516 10 C 0.507 3.493 11 O -0.524 6.524 12 N -0.687 5.687 13 C 0.167 3.833 14 C -0.077 4.077 15 C -0.193 4.193 16 C -0.076 4.076 17 C -0.223 4.223 18 C 0.150 3.850 19 O -0.176 6.176 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.168 4.168 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.416 0.584 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.270 0.730 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 -10.103 -21.001 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 H 0.098 0.902 4 C -0.167 4.167 5 C -0.174 4.174 6 C -0.027 4.027 7 N -0.325 5.325 8 C 0.304 3.696 9 O -0.392 6.392 10 C 0.287 3.713 11 O -0.401 6.401 12 N -0.339 5.339 13 C 0.045 3.955 14 C -0.078 4.078 15 C -0.213 4.213 16 C -0.094 4.094 17 C -0.243 4.243 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.469 4.469 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.188 4.188 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.253 0.747 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.080 0.920 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.801 -9.965 -20.928 23.894 hybrid contribution -0.597 0.792 0.993 1.403 sum -6.398 -9.173 -19.935 22.857 Atomic orbital electron populations 1.22159 0.94313 1.02481 1.03294 1.21689 0.95104 0.96477 0.83903 0.90227 1.22733 1.01999 0.95685 0.96296 1.22885 1.02149 0.96784 0.95562 1.22727 0.94590 0.89830 0.95507 1.48357 1.49395 1.30569 1.04202 1.19900 0.81807 0.85072 0.82789 1.90775 1.37461 1.27752 1.83187 1.19963 0.81977 0.85150 0.84168 1.90695 1.37723 1.28132 1.83593 1.45989 1.51048 1.32555 1.04317 1.20309 0.98795 0.94148 0.82230 1.19194 0.95919 0.97766 0.94909 1.20474 0.98139 1.04771 0.97878 1.20745 0.98261 0.95688 0.94713 1.21259 0.97639 1.02542 1.02851 1.19312 0.89957 0.89769 0.91347 1.83984 1.40939 1.45532 1.37432 1.21378 1.09117 1.16019 1.00385 0.88946 1.25308 0.95816 0.95902 0.99490 1.70045 1.14771 1.25491 1.39176 0.85636 0.78846 0.79036 0.79837 1.19071 1.20111 1.20085 1.20085 1.02312 1.01207 0.95215 0.90870 0.91480 0.92407 0.89683 0.90345 0.90522 0.89608 0.90841 0.87952 0.74734 0.90198 0.90299 0.87437 0.87192 0.85384 0.91980 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.06 37.16 0.34 -1.06 16 2 C 0.13 1.14 3.49 -66.95 -0.23 0.90 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -0.73 6.49 -24.89 -0.16 -0.89 16 5 C -0.14 -0.80 7.10 -24.46 -0.17 -0.97 16 6 C 0.10 0.85 6.08 -2.41 -0.01 0.83 16 7 N -0.59 -6.44 3.08 -163.38 -0.50 -6.94 16 8 C 0.52 7.09 7.70 -11.59 -0.09 7.00 16 9 O -0.52 -8.10 15.37 5.49 0.08 -8.02 16 10 C 0.51 7.12 7.86 -11.58 -0.09 7.03 16 11 O -0.52 -7.77 13.77 5.50 0.08 -7.69 16 12 N -0.69 -9.65 5.54 -61.91 -0.34 -9.99 16 13 C 0.17 2.38 5.80 -5.20 -0.03 2.35 16 14 C -0.08 -1.30 5.25 -104.65 -0.55 -1.85 16 15 C -0.19 -3.15 9.70 -39.54 -0.38 -3.54 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 17 C -0.22 -4.68 9.17 -39.40 -0.36 -5.04 16 18 C 0.15 3.52 6.65 -39.11 -0.26 3.26 16 19 O -0.18 -4.91 9.76 0.04 0.00 -4.91 16 20 C -0.39 -10.80 9.49 30.89 0.29 -10.50 16 21 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 24 Si 0.94 20.30 29.55 -169.99 -5.02 15.27 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 C -0.17 -3.41 9.64 -39.40 -0.38 -3.79 16 29 H 0.07 0.81 6.74 -51.93 -0.35 0.46 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.37 7.83 -51.93 -0.41 -0.04 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.04 6.14 -51.93 -0.32 0.72 16 38 H 0.42 5.94 7.94 -40.82 -0.32 5.62 16 39 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.13 2.69 5.64 -52.48 -0.30 2.40 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -31.65 376.20 -8.04 -39.70 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.17 Total: 8.20 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.59 Total: -7.02 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.09 Total: -41.19 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.16 Total: -20.62 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.65 -8.04 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323494185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.891 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds