Wall clock time and date at job start Tue Mar 31 2020 17:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.87643 * 2 1 4 4 C 1.54327 * 109.87801 * 238.82941 * 2 1 3 5 5 C 1.55162 * 102.94165 * 262.77480 * 4 2 1 6 6 C 1.55126 * 101.48343 * 324.33528 * 5 4 2 7 7 N 1.47020 * 109.87985 * 121.02266 * 2 1 3 8 8 C 1.34773 * 125.64784 * 300.43166 * 7 2 1 9 9 O 1.21355 * 120.00104 * 0.02562 * 8 7 2 10 10 C 1.49453 * 120.00002 * 180.02562 * 8 7 2 11 11 O 1.21345 * 119.99753 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99958 * 180.02562 * 10 8 7 13 13 C 1.46498 * 119.99927 * 180.02562 * 12 10 8 14 14 C 1.50694 * 109.47187 * 180.02562 * 13 12 10 15 15 C 1.38324 * 119.96840 * 90.00166 * 14 13 12 16 16 C 1.38276 * 120.14087 * 179.72548 * 15 14 13 17 17 C 1.38117 * 120.07028 * 359.97438 * 16 15 14 18 18 C 1.38860 * 119.92802 * 0.02562 * 17 16 15 19 19 O 1.35755 * 120.06631 * 179.97438 * 18 17 16 20 20 C 1.34827 * 116.99874 * 354.46320 * 19 18 17 21 21 H 1.07995 * 120.00373 * 5.06103 * 20 19 18 22 22 C 1.38658 * 119.99764 * 185.05543 * 20 19 18 23 23 N 1.31551 * 119.99844 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99902 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47129 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47337 * 119.99933 * 24 22 20 27 27 H 1.48503 * 109.47178 * 240.00175 * 24 22 20 28 28 C 1.38080 * 119.96748 * 269.72515 * 14 13 12 29 29 H 1.08993 * 109.47133 * 300.43969 * 1 2 3 30 30 H 1.09003 * 109.46992 * 60.43526 * 1 2 3 31 31 H 1.08998 * 109.47320 * 180.42781 * 1 2 3 32 32 H 1.08996 * 110.72630 * 21.13976 * 4 2 1 33 33 H 1.09000 * 110.71932 * 144.41850 * 4 2 1 34 34 H 1.08996 * 111.00043 * 82.57414 * 5 4 2 35 35 H 1.08997 * 111.00263 * 206.39169 * 5 4 2 36 36 H 1.08994 * 110.50137 * 278.45246 * 6 5 4 37 37 H 1.09005 * 110.34027 * 156.05897 * 6 5 4 38 38 H 0.97001 * 119.99900 * 0.02562 * 12 10 8 39 39 H 1.09003 * 109.47082 * 59.99873 * 13 12 10 40 40 H 1.09003 * 109.46957 * 300.00251 * 13 12 10 41 41 H 1.08005 * 119.92658 * 359.69583 * 15 14 13 42 42 H 1.08004 * 119.96426 * 179.97438 * 16 15 14 43 43 H 1.08006 * 120.03392 * 179.97438 * 17 16 15 44 44 H 0.97003 * 119.99787 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.03291 * 0.27505 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2418 5 6 2.3518 -2.1705 -0.6896 6 6 2.8613 -1.8456 0.7391 7 7 2.0300 -0.7126 1.1848 8 6 1.7754 -0.3812 2.4662 9 8 1.0782 0.5798 2.7174 10 6 2.3517 -1.1973 3.5777 11 8 3.0491 -2.1580 3.3264 12 7 2.0967 -0.8663 4.8590 13 6 2.6620 -1.6659 5.9486 14 6 2.2284 -1.0898 7.2718 15 6 1.0590 -1.5284 7.8665 16 6 0.6607 -1.0063 9.0833 17 6 1.4302 -0.0451 9.7092 18 6 2.6046 0.3972 9.1149 19 8 3.3628 1.3422 9.7273 20 6 2.8635 1.8932 10.8521 21 1 1.9406 1.5214 11.2718 22 6 3.5352 2.9371 11.4699 23 7 4.6598 3.3896 10.9589 24 14 2.8439 3.6999 13.0286 25 1 1.5787 3.0146 13.3961 26 1 3.8266 3.5488 14.1317 27 1 2.5770 5.1423 12.7975 28 6 3.0017 -0.1288 7.8923 29 1 -0.3633 0.5206 0.8860 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3634 -1.0276 0.0077 32 1 1.2918 -0.7917 -2.0191 33 1 2.9656 -0.2854 -1.6179 34 1 1.4451 -2.7745 -0.6568 35 1 3.1265 -2.6638 -1.2766 36 1 3.9122 -1.5580 0.7134 37 1 2.7177 -2.7031 1.3967 38 1 1.5388 -0.0986 5.0598 39 1 3.7500 -1.6503 5.8841 40 1 2.3079 -2.6936 5.8666 41 1 0.4556 -2.2798 7.3790 42 1 -0.2531 -1.3504 9.5449 43 1 1.1183 0.3626 10.6595 44 1 5.1295 4.1201 11.3909 45 1 3.9147 0.2132 7.4276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323494185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:05 Heat of formation + Delta-G solvation = -87.632251 kcal Electronic energy + Delta-G solvation = -27463.040173 eV Core-core repulsion = 23445.523809 eV Total energy + Delta-G solvation = -4017.516364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.97271 -40.89542 -40.05305 -38.66993 -38.48877 -35.97448 -34.30493 -32.94644 -32.34403 -32.08441 -30.82188 -28.07401 -27.26153 -26.79968 -25.59739 -23.36751 -23.18607 -22.41290 -21.83430 -20.67260 -19.64862 -19.07468 -18.55017 -18.05266 -17.38866 -16.89743 -16.79309 -16.57628 -16.37726 -16.09998 -15.65314 -15.50218 -15.38447 -14.84190 -14.76987 -14.45191 -14.36368 -14.09835 -13.97467 -13.72279 -13.55385 -13.39201 -13.29867 -13.08044 -12.96865 -12.74722 -12.55846 -12.38801 -12.29995 -12.09608 -11.94884 -11.71373 -11.53107 -11.23793 -10.84815 -10.65408 -10.37390 -9.87695 -9.78888 -9.05806 -8.48650 -6.17138 0.28153 0.30442 0.68037 1.27438 1.34725 1.43218 1.52961 2.06384 2.16108 2.42975 2.82600 3.12315 3.28949 3.35114 3.61898 3.66816 3.76875 3.98222 4.06240 4.21339 4.27291 4.32651 4.36783 4.44112 4.49057 4.57386 4.58425 4.70311 4.79348 4.86863 4.94491 4.98137 5.03157 5.07724 5.10937 5.11448 5.22355 5.23136 5.26654 5.40082 5.58875 5.66897 5.68860 5.95632 6.00457 6.14125 6.19863 6.57314 6.85893 6.96197 7.76236 8.74749 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.002123 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.574224 B =13186.904687 C =13620.969361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.125 4.125 6 C 0.088 3.912 7 N -0.586 5.586 8 C 0.515 3.485 9 O -0.547 6.547 10 C 0.509 3.491 11 O -0.532 6.532 12 N -0.687 5.687 13 C 0.173 3.827 14 C -0.064 4.064 15 C -0.167 4.167 16 C -0.071 4.071 17 C -0.233 4.233 18 C 0.111 3.889 19 O -0.232 6.232 20 C -0.412 4.412 21 H 0.104 0.896 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.019 2.981 25 H -0.250 1.250 26 H -0.269 1.269 27 H -0.270 1.270 28 C -0.180 4.180 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.415 0.585 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 -12.458 -22.946 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.033 4.033 7 N -0.319 5.319 8 C 0.298 3.702 9 O -0.425 6.425 10 C 0.290 3.710 11 O -0.409 6.409 12 N -0.339 5.339 13 C 0.051 3.949 14 C -0.065 4.065 15 C -0.186 4.186 16 C -0.088 4.088 17 C -0.252 4.252 18 C 0.060 3.940 19 O -0.139 6.139 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.222 4.222 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.173 1.173 26 H -0.194 1.194 27 H -0.195 1.195 28 C -0.200 4.200 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.251 0.749 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.029 -12.389 -22.934 27.275 hybrid contribution -0.018 1.245 1.314 1.810 sum -8.047 -11.145 -21.620 25.620 Atomic orbital electron populations 1.22107 0.94083 1.02547 1.02936 1.21982 0.95403 0.96507 0.84383 0.91082 1.22747 1.03035 0.94834 0.95019 1.22886 1.02941 0.97102 0.93402 1.22890 0.94539 0.88599 0.97317 1.48561 1.48573 1.30858 1.03926 1.19840 0.81879 0.84837 0.83650 1.90760 1.39040 1.28983 1.83733 1.20069 0.81711 0.85020 0.84207 1.90694 1.38040 1.28467 1.83737 1.45931 1.51069 1.32540 1.04408 1.20282 0.98864 0.94930 0.80799 1.19432 0.95391 0.96053 0.95625 1.21031 0.97153 1.03623 0.96774 1.21177 0.98852 0.94002 0.94815 1.21393 0.97336 1.03557 1.02922 1.19866 0.91325 0.90059 0.92719 1.83949 1.43182 1.48093 1.38651 1.21872 1.09679 1.16501 1.00769 0.87869 1.26606 0.96083 0.96233 1.03258 1.70192 1.16987 1.27030 1.41714 0.84521 0.78668 0.77997 0.74974 1.17272 1.19387 1.19495 1.20251 1.02786 1.02268 0.94710 0.93935 0.89156 0.92005 0.87520 0.89241 0.90088 0.87314 0.90728 0.89250 0.74882 0.90426 0.87909 0.83173 0.83241 0.86110 0.91864 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.06 71.98 0.65 -1.83 16 2 C 0.12 1.90 3.49 45.34 0.16 2.05 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.12 -0.96 6.49 31.79 0.21 -0.76 16 5 C -0.13 -1.08 7.10 32.06 0.23 -0.85 16 6 C 0.09 1.42 6.08 86.93 0.53 1.95 16 7 N -0.59 -12.25 3.08 -789.17 -2.43 -14.68 16 8 C 0.52 13.92 7.70 87.27 0.67 14.59 16 9 O -0.55 -17.45 15.37 -3.26 -0.05 -17.50 16 10 C 0.51 13.90 7.86 87.27 0.69 14.58 16 11 O -0.53 -15.13 13.77 -3.23 -0.04 -15.17 16 12 N -0.69 -18.57 5.54 -468.15 -2.59 -21.16 16 13 C 0.17 4.59 5.80 85.63 0.50 5.08 16 14 C -0.06 -2.06 5.25 -19.88 -0.10 -2.16 16 15 C -0.17 -4.80 9.70 22.30 0.22 -4.59 16 16 C -0.07 -2.26 10.04 22.25 0.22 -2.03 16 17 C -0.23 -9.75 9.17 22.39 0.21 -9.54 16 18 C 0.11 5.40 6.65 22.58 0.15 5.55 16 19 O -0.23 -13.89 9.76 -22.77 -0.22 -14.11 16 20 C -0.41 -23.85 9.49 67.92 0.64 -23.21 16 21 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 22 C -0.02 -1.39 5.49 84.84 0.47 -0.92 16 23 N -0.92 -56.81 13.67 21.61 0.30 -56.51 16 24 Si 1.02 42.85 29.55 68.60 2.03 44.87 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 C -0.18 -7.50 9.64 22.39 0.22 -7.29 16 29 H 0.04 0.94 6.74 -2.39 -0.02 0.92 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 0.47 7.83 -2.39 -0.02 0.45 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.70 6.14 -2.38 -0.01 1.68 16 38 H 0.41 11.60 7.94 -92.71 -0.74 10.87 16 39 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.10 2.31 8.08 -2.39 -0.02 2.29 16 41 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 44 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -75.02 376.20 2.91 -72.11 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.29 Total: 31.53 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.64 Total: -9.37 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -4.73 Total: -92.35 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.32 Total: -46.79 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -75.02 2.91 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323494185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.522 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds