Wall clock time and date at job start Tue Mar 31 2020 17:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.00125 * 2 1 4 4 C 1.54327 * 109.88635 * 121.10051 * 2 1 3 5 5 C 1.55154 * 102.94439 * 141.60678 * 4 2 1 6 6 C 1.55129 * 101.48760 * 324.33419 * 5 4 2 7 7 N 1.47027 * 109.88426 * 238.90627 * 2 1 3 8 8 C 1.34782 * 125.64264 * 61.60297 * 7 2 1 9 9 O 1.21340 * 120.00326 * 0.02562 * 8 7 2 10 10 C 1.49453 * 119.99301 * 180.02562 * 8 7 2 11 11 O 1.21344 * 120.00202 * 0.02562 * 10 8 7 12 12 N 1.34782 * 119.99301 * 179.97438 * 10 8 7 13 13 C 1.46508 * 119.99540 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.46920 * 180.02562 * 13 12 10 15 15 C 1.38321 * 119.96060 * 269.97622 * 14 13 12 16 16 C 1.38283 * 120.13571 * 180.02562 * 15 14 13 17 17 C 1.38121 * 120.06746 * 359.73899 * 16 15 14 18 18 C 1.38854 * 119.92935 * 0.51682 * 17 16 15 19 19 O 1.35760 * 120.06925 * 179.76518 * 18 17 16 20 20 C 1.34826 * 116.99779 * 5.23455 * 19 18 17 21 21 H 1.08001 * 120.00203 * 354.92333 * 20 19 18 22 22 C 1.38655 * 119.99963 * 174.92364 * 20 19 18 23 23 N 1.31558 * 120.00045 * 359.71911 * 22 20 19 24 24 Si 1.86802 * 119.99943 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47420 * 89.99722 * 24 22 20 26 26 H 1.48498 * 109.46989 * 209.99894 * 24 22 20 27 27 H 1.48501 * 109.47308 * 329.99560 * 24 22 20 28 28 C 1.38077 * 119.96620 * 89.99858 * 14 13 12 29 29 H 1.08999 * 109.46893 * 179.64089 * 1 2 3 30 30 H 1.08998 * 109.46914 * 299.64051 * 1 2 3 31 31 H 1.08998 * 109.47302 * 59.63937 * 1 2 3 32 32 H 1.08999 * 110.71877 * 259.97291 * 4 2 1 33 33 H 1.09000 * 110.71779 * 23.24153 * 4 2 1 34 34 H 1.09001 * 111.00307 * 82.57230 * 5 4 2 35 35 H 1.09000 * 111.00555 * 206.38698 * 5 4 2 36 36 H 1.08995 * 110.49675 * 278.45316 * 6 5 4 37 37 H 1.08997 * 110.34219 * 156.06041 * 6 5 4 38 38 H 0.96997 * 120.00059 * 359.97438 * 12 10 8 39 39 H 1.08990 * 109.46993 * 59.99773 * 13 12 10 40 40 H 1.09003 * 109.46653 * 299.99593 * 13 12 10 41 41 H 1.07996 * 119.93570 * 359.97438 * 15 14 13 42 42 H 1.08002 * 119.96404 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.03342 * 180.25241 * 17 16 15 44 44 H 0.97001 * 119.99741 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.03411 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6922 6 6 2.8099 -1.8825 -0.7370 7 7 2.0301 -0.7140 -1.1840 8 6 1.8073 -0.3619 -2.4658 9 8 1.1432 0.6217 -2.7181 10 6 2.3785 -1.1830 -3.5762 11 8 3.0423 -2.1670 -3.3238 12 7 2.1554 -0.8312 -4.8580 13 6 2.7148 -1.6364 -5.9466 14 6 2.3223 -1.0331 -7.2706 15 6 1.1507 -1.4292 -7.8901 16 6 0.7874 -0.8783 -9.1053 17 6 1.5912 0.0736 -9.7016 18 6 2.7705 0.4694 -9.0848 19 8 3.5650 1.4013 -9.6706 20 6 3.1003 1.9822 -10.7951 21 1 2.1746 1.6425 -11.2355 22 6 3.8109 3.0158 -11.3861 23 7 4.9358 3.4334 -10.8466 24 14 3.1667 3.8211 -12.9436 25 1 2.2882 4.9630 -12.5836 26 1 4.3088 4.3121 -13.7558 27 1 2.3910 2.8284 -13.7298 28 6 3.1328 -0.0858 -7.8642 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 2.3530 -0.0461 2.0200 33 1 1.3052 -1.4460 1.6182 34 1 4.1655 -0.8689 0.6602 35 1 3.4856 -2.4108 1.2798 36 1 2.1801 -2.7718 -0.7117 37 1 3.6655 -2.0412 -1.3934 38 1 1.6238 -0.0453 -5.0597 39 1 2.3286 -2.6535 -5.8816 40 1 3.8015 -1.6543 -5.8638 41 1 0.5189 -2.1709 -7.4243 42 1 -0.1282 -1.1894 -9.5864 43 1 1.3048 0.5065 -10.6487 44 1 5.4331 4.1562 -11.2603 45 1 4.0473 0.2231 -7.3799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323494186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:18 Heat of formation + Delta-G solvation = -66.875077 kcal Electronic energy + Delta-G solvation = -27451.880563 eV Core-core repulsion = 23435.264297 eV Total energy + Delta-G solvation = -4016.616266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.60 seconds Orbital eigenvalues (eV) -40.95578 -39.40155 -38.86301 -37.70398 -36.85307 -34.70533 -32.34691 -32.09609 -31.61786 -30.89975 -29.19305 -26.77179 -26.13315 -25.37424 -24.40544 -22.29536 -21.73849 -21.21736 -20.85305 -19.71658 -18.13464 -17.49588 -17.31337 -16.93053 -16.51931 -15.83247 -15.46516 -15.18450 -14.74577 -14.59277 -14.35972 -14.18353 -14.00833 -13.86200 -13.67728 -13.52808 -13.37661 -13.00712 -12.76121 -12.55633 -12.45380 -12.21226 -12.00425 -11.88163 -11.69251 -11.39605 -11.30047 -11.16048 -11.04560 -10.93930 -10.85735 -10.72591 -10.47934 -9.58463 -9.42165 -9.22865 -8.98092 -8.89785 -8.27509 -7.34589 -6.49726 -4.09207 1.37466 1.76396 2.23199 2.35089 3.10063 3.11232 3.15264 3.15882 3.45332 3.92250 4.13649 4.19633 4.40248 4.50022 4.54469 4.86501 4.86976 4.93625 5.03818 5.05986 5.20166 5.21100 5.35636 5.39098 5.48356 5.53414 5.61079 5.67079 5.69034 5.76285 5.79161 5.84238 5.90246 6.03973 6.05549 6.22395 6.25751 6.52367 6.79134 6.95573 6.98441 7.14370 7.21363 7.26624 7.34270 7.64520 7.68822 7.94221 7.95388 8.95550 9.63768 10.67982 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.002134 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.349442 B =13115.453132 C =13528.273548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.081 0.919 4 C -0.129 4.129 5 C -0.137 4.137 6 C 0.096 3.904 7 N -0.590 5.590 8 C 0.521 3.479 9 O -0.516 6.516 10 C 0.507 3.493 11 O -0.524 6.524 12 N -0.687 5.687 13 C 0.167 3.833 14 C -0.077 4.077 15 C -0.193 4.193 16 C -0.076 4.076 17 C -0.223 4.223 18 C 0.150 3.850 19 O -0.175 6.175 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.168 4.168 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 -9.862 20.750 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 H 0.099 0.901 4 C -0.167 4.167 5 C -0.175 4.175 6 C -0.026 4.026 7 N -0.325 5.325 8 C 0.304 3.696 9 O -0.392 6.392 10 C 0.287 3.713 11 O -0.401 6.401 12 N -0.339 5.339 13 C 0.045 3.955 14 C -0.078 4.078 15 C -0.213 4.213 16 C -0.094 4.094 17 C -0.243 4.243 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.188 4.188 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.940 -9.735 20.690 23.625 hybrid contribution -0.641 0.774 -0.993 1.413 sum -6.581 -8.962 19.697 22.618 Atomic orbital electron populations 1.22154 0.94352 1.02453 1.03267 1.21707 0.94943 0.96624 0.83911 0.90122 1.22751 0.97981 0.99685 0.96255 1.22896 0.97954 1.01117 0.95553 1.22710 0.96732 0.87610 0.95549 1.48368 1.51476 1.28488 1.04218 1.19899 0.81533 0.85355 0.82792 1.90773 1.38604 1.26648 1.83148 1.19966 0.81726 0.85406 0.84163 1.90695 1.39045 1.26848 1.83556 1.45992 1.52681 1.30922 1.04319 1.20308 0.99002 0.93917 0.82256 1.19196 0.95782 0.97880 0.94929 1.20475 0.98085 1.04921 0.97792 1.20748 0.98227 0.95590 0.94837 1.21255 0.97264 1.02842 1.02941 1.19313 0.89678 0.89919 0.91485 1.83985 1.40045 1.45731 1.38095 1.21329 1.08828 1.16263 1.00523 0.89004 1.25305 0.95677 0.96000 0.99503 1.70038 1.13791 1.26525 1.39148 0.85701 0.78432 0.79440 0.79801 1.19820 1.20219 1.19171 1.20082 1.02102 1.01236 0.95395 0.92405 0.91406 0.90999 0.89819 0.90235 0.90406 0.89585 0.90982 0.87887 0.74735 0.90294 0.90207 0.87436 0.87192 0.85388 0.91929 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.10 37.16 0.34 -1.05 16 2 C 0.13 1.14 3.46 -66.95 -0.23 0.91 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -0.73 6.47 -24.90 -0.16 -0.89 16 5 C -0.14 -0.82 7.10 -24.46 -0.17 -1.00 16 6 C 0.10 0.85 6.08 -2.41 -0.01 0.84 16 7 N -0.59 -6.46 3.06 -163.38 -0.50 -6.96 16 8 C 0.52 7.11 7.71 -11.58 -0.09 7.02 16 9 O -0.52 -8.13 15.51 5.51 0.09 -8.05 16 10 C 0.51 7.13 7.86 -11.58 -0.09 7.04 16 11 O -0.52 -7.77 13.77 5.50 0.08 -7.70 16 12 N -0.69 -9.67 5.54 -61.90 -0.34 -10.01 16 13 C 0.17 2.38 5.80 -5.19 -0.03 2.35 16 14 C -0.08 -1.30 5.25 -104.65 -0.55 -1.85 16 15 C -0.19 -3.16 9.70 -39.53 -0.38 -3.54 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 17 C -0.22 -4.68 9.17 -39.40 -0.36 -5.04 16 18 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 19 O -0.18 -4.91 9.76 0.03 0.00 -4.91 16 20 C -0.39 -10.81 9.49 30.89 0.29 -10.51 16 21 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.01 13.67 55.48 0.76 -24.26 16 24 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 28 C -0.17 -3.41 9.65 -39.40 -0.38 -3.79 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.39 7.85 -51.93 -0.41 -0.02 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.07 6.14 -51.93 -0.32 0.75 16 38 H 0.42 5.96 7.94 -40.82 -0.32 5.63 16 39 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 44 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -31.64 376.49 -8.04 -39.68 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.18 Total: 8.27 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.59 Total: -7.01 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.09 Total: -41.22 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.16 Total: -20.65 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.64 -8.04 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323494186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.191 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.60 seconds