Wall clock time and date at job start Tue Mar 31 2020 17:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.00125 * 2 1 4 4 C 1.54327 * 109.88635 * 121.10051 * 2 1 3 5 5 C 1.55154 * 102.94439 * 141.60678 * 4 2 1 6 6 C 1.55129 * 101.48760 * 324.33419 * 5 4 2 7 7 N 1.47027 * 109.88426 * 238.90627 * 2 1 3 8 8 C 1.34782 * 125.64264 * 61.60297 * 7 2 1 9 9 O 1.21340 * 120.00326 * 0.02562 * 8 7 2 10 10 C 1.49453 * 119.99301 * 180.02562 * 8 7 2 11 11 O 1.21344 * 120.00202 * 0.02562 * 10 8 7 12 12 N 1.34782 * 119.99301 * 179.97438 * 10 8 7 13 13 C 1.46508 * 119.99540 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.46920 * 180.02562 * 13 12 10 15 15 C 1.38321 * 119.96060 * 269.97622 * 14 13 12 16 16 C 1.38283 * 120.13571 * 180.02562 * 15 14 13 17 17 C 1.38121 * 120.06746 * 359.73899 * 16 15 14 18 18 C 1.38854 * 119.92935 * 0.51682 * 17 16 15 19 19 O 1.35760 * 120.06925 * 179.76518 * 18 17 16 20 20 C 1.34826 * 116.99779 * 5.23455 * 19 18 17 21 21 H 1.08001 * 120.00203 * 354.92333 * 20 19 18 22 22 C 1.38655 * 119.99963 * 174.92364 * 20 19 18 23 23 N 1.31558 * 120.00045 * 359.71911 * 22 20 19 24 24 Si 1.86802 * 119.99943 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47420 * 89.99722 * 24 22 20 26 26 H 1.48498 * 109.46989 * 209.99894 * 24 22 20 27 27 H 1.48501 * 109.47308 * 329.99560 * 24 22 20 28 28 C 1.38077 * 119.96620 * 89.99858 * 14 13 12 29 29 H 1.08999 * 109.46893 * 179.64089 * 1 2 3 30 30 H 1.08998 * 109.46914 * 299.64051 * 1 2 3 31 31 H 1.08998 * 109.47302 * 59.63937 * 1 2 3 32 32 H 1.08999 * 110.71877 * 259.97291 * 4 2 1 33 33 H 1.09000 * 110.71779 * 23.24153 * 4 2 1 34 34 H 1.09001 * 111.00307 * 82.57230 * 5 4 2 35 35 H 1.09000 * 111.00555 * 206.38698 * 5 4 2 36 36 H 1.08995 * 110.49675 * 278.45316 * 6 5 4 37 37 H 1.08997 * 110.34219 * 156.06041 * 6 5 4 38 38 H 0.96997 * 120.00059 * 359.97438 * 12 10 8 39 39 H 1.08990 * 109.46993 * 59.99773 * 13 12 10 40 40 H 1.09003 * 109.46653 * 299.99593 * 13 12 10 41 41 H 1.07996 * 119.93570 * 359.97438 * 15 14 13 42 42 H 1.08002 * 119.96404 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.03342 * 180.25241 * 17 16 15 44 44 H 0.97001 * 119.99741 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.03411 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6922 6 6 2.8099 -1.8825 -0.7370 7 7 2.0301 -0.7140 -1.1840 8 6 1.8073 -0.3619 -2.4658 9 8 1.1432 0.6217 -2.7181 10 6 2.3785 -1.1830 -3.5762 11 8 3.0423 -2.1670 -3.3238 12 7 2.1554 -0.8312 -4.8580 13 6 2.7148 -1.6364 -5.9466 14 6 2.3223 -1.0331 -7.2706 15 6 1.1507 -1.4292 -7.8901 16 6 0.7874 -0.8783 -9.1053 17 6 1.5912 0.0736 -9.7016 18 6 2.7705 0.4694 -9.0848 19 8 3.5650 1.4013 -9.6706 20 6 3.1003 1.9822 -10.7951 21 1 2.1746 1.6425 -11.2355 22 6 3.8109 3.0158 -11.3861 23 7 4.9358 3.4334 -10.8466 24 14 3.1667 3.8211 -12.9436 25 1 2.2882 4.9630 -12.5836 26 1 4.3088 4.3121 -13.7558 27 1 2.3910 2.8284 -13.7298 28 6 3.1328 -0.0858 -7.8642 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 2.3530 -0.0461 2.0200 33 1 1.3052 -1.4460 1.6182 34 1 4.1655 -0.8689 0.6602 35 1 3.4856 -2.4108 1.2798 36 1 2.1801 -2.7718 -0.7117 37 1 3.6655 -2.0412 -1.3934 38 1 1.6238 -0.0453 -5.0597 39 1 2.3286 -2.6535 -5.8816 40 1 3.8015 -1.6543 -5.8638 41 1 0.5189 -2.1709 -7.4243 42 1 -0.1282 -1.1894 -9.5864 43 1 1.3048 0.5065 -10.6487 44 1 5.4331 4.1562 -11.2603 45 1 4.0473 0.2231 -7.3799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323494186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:16 Heat of formation + Delta-G solvation = -87.903328 kcal Electronic energy + Delta-G solvation = -27452.792416 eV Core-core repulsion = 23435.264297 eV Total energy + Delta-G solvation = -4017.528119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 5.32 seconds Orbital eigenvalues (eV) -41.96577 -40.89287 -40.03936 -38.66117 -38.48704 -35.97065 -34.30289 -32.89612 -32.35882 -32.23279 -30.82115 -28.07126 -27.26057 -26.79232 -25.51945 -23.32861 -23.07663 -22.41552 -21.96569 -20.73453 -19.61531 -19.01034 -18.45074 -18.25113 -17.48912 -16.97555 -16.71219 -16.61734 -16.19974 -16.11427 -15.62472 -15.53058 -15.15818 -14.88814 -14.82663 -14.60502 -14.35818 -14.15353 -13.96787 -13.72266 -13.66587 -13.38950 -13.26049 -13.07927 -12.81541 -12.62874 -12.54213 -12.40369 -12.29740 -12.12079 -11.97844 -11.73854 -11.63261 -11.24217 -10.83736 -10.65070 -10.37456 -9.87276 -9.78649 -9.05768 -8.48383 -6.16995 0.28284 0.30455 0.68111 1.27606 1.34741 1.44317 1.52117 2.06418 2.16402 2.43113 2.82760 3.12457 3.29035 3.35264 3.60335 3.67768 3.77028 3.96424 4.06296 4.23830 4.27361 4.30030 4.36797 4.42841 4.49077 4.57659 4.61442 4.70332 4.74683 4.86405 4.94714 4.98209 5.04602 5.08170 5.10682 5.11014 5.17746 5.22918 5.33168 5.35129 5.58905 5.66952 5.68873 5.95661 6.00437 6.14170 6.19906 6.57290 6.85897 6.96317 7.76263 8.74777 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019640 B = 0.002134 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.349442 B =13115.453132 C =13528.273548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.129 4.129 6 C 0.089 3.911 7 N -0.586 5.586 8 C 0.515 3.485 9 O -0.547 6.547 10 C 0.509 3.491 11 O -0.532 6.532 12 N -0.688 5.688 13 C 0.173 3.827 14 C -0.064 4.064 15 C -0.167 4.167 16 C -0.071 4.071 17 C -0.233 4.233 18 C 0.110 3.890 19 O -0.232 6.232 20 C -0.413 4.413 21 H 0.104 0.896 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.019 2.981 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.251 1.251 28 C -0.180 4.180 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.415 0.585 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -12.167 22.625 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.167 4.167 6 C -0.032 4.032 7 N -0.319 5.319 8 C 0.298 3.702 9 O -0.426 6.426 10 C 0.290 3.710 11 O -0.409 6.409 12 N -0.340 5.340 13 C 0.051 3.949 14 C -0.065 4.065 15 C -0.186 4.186 16 C -0.088 4.088 17 C -0.252 4.252 18 C 0.060 3.940 19 O -0.139 6.139 20 C -0.489 4.489 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.838 3.162 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.174 1.174 28 C -0.200 4.200 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.251 0.749 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.238 -12.110 22.624 26.951 hybrid contribution -0.060 1.206 -1.295 1.770 sum -8.298 -10.904 21.329 25.351 Atomic orbital electron populations 1.22103 0.94097 1.02553 1.02906 1.22000 0.95254 0.96631 0.84387 0.91023 1.22762 0.97905 0.99919 0.94917 1.22901 0.97920 1.02193 0.93648 1.22870 0.96053 0.87214 0.97081 1.48575 1.50567 1.28866 1.03937 1.19840 0.81613 0.85108 0.83659 1.90757 1.40220 1.27883 1.83700 1.20071 0.81445 0.85300 0.84199 1.90694 1.39346 1.27185 1.83693 1.45935 1.52703 1.30906 1.04419 1.20282 0.99160 0.94615 0.80817 1.19433 0.95191 0.96188 0.95692 1.21031 0.97235 1.03707 0.96633 1.21180 0.98773 0.93884 0.95007 1.21393 0.97006 1.03859 1.02965 1.19868 0.90962 0.90239 0.92909 1.83950 1.42326 1.48263 1.39310 1.21834 1.09421 1.16738 1.00913 0.87879 1.26606 0.95816 0.96434 1.03288 1.70189 1.15941 1.28092 1.41702 0.84583 0.78001 0.78511 0.75109 1.18929 1.19685 1.17440 1.20249 1.02650 1.02257 0.94851 0.91964 0.89128 0.94014 0.87859 0.88719 0.90555 0.87120 0.90191 0.89603 0.74892 0.87923 0.90411 0.83188 0.83239 0.86083 0.91860 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.10 71.98 0.66 -1.82 16 2 C 0.12 1.90 3.46 45.34 0.16 2.05 16 3 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.12 -0.95 6.47 31.78 0.21 -0.74 16 5 C -0.13 -1.18 7.10 32.06 0.23 -0.95 16 6 C 0.09 1.44 6.08 86.93 0.53 1.96 16 7 N -0.59 -12.27 3.06 -789.18 -2.42 -14.69 16 8 C 0.51 13.95 7.71 87.27 0.67 14.63 16 9 O -0.55 -17.53 15.51 -3.21 -0.05 -17.58 16 10 C 0.51 13.92 7.86 87.27 0.69 14.61 16 11 O -0.53 -15.14 13.77 -3.23 -0.04 -15.18 16 12 N -0.69 -18.62 5.54 -468.12 -2.59 -21.21 16 13 C 0.17 4.59 5.80 85.63 0.50 5.09 16 14 C -0.06 -2.06 5.25 -19.88 -0.10 -2.17 16 15 C -0.17 -4.82 9.70 22.30 0.22 -4.60 16 16 C -0.07 -2.26 10.04 22.25 0.22 -2.03 16 17 C -0.23 -9.76 9.17 22.39 0.21 -9.55 16 18 C 0.11 5.40 6.65 22.58 0.15 5.55 16 19 O -0.23 -13.88 9.76 -22.80 -0.22 -14.10 16 20 C -0.41 -23.90 9.49 67.92 0.64 -23.26 16 21 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 22 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 23 N -0.92 -56.81 13.67 21.61 0.30 -56.52 16 24 Si 1.02 42.80 29.55 68.60 2.03 44.83 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 28 C -0.18 -7.50 9.65 22.39 0.22 -7.28 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.91 6.88 -2.39 -0.02 0.89 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.54 7.85 -2.39 -0.02 0.52 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.71 6.14 -2.39 -0.01 1.69 16 38 H 0.41 11.64 7.94 -92.71 -0.74 10.90 16 39 H 0.10 2.31 8.08 -2.39 -0.02 2.29 16 40 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 41 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 44 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -75.02 376.49 2.93 -72.09 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.29 Total: 31.78 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 5.65 Total: -9.41 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -4.72 Total: -92.41 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.32 Total: -46.87 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.02 2.93 -72.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323494186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.812 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds