Wall clock time and date at job start Tue Mar 31 2020 17:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 115.55985 * 2 1 4 4 C 1.53072 * 117.51586 * 145.70455 * 2 1 3 5 5 C 1.52998 * 117.49917 * 214.31914 * 2 1 3 6 6 H 1.08996 * 117.50333 * 144.99602 * 5 2 1 7 7 C 1.53000 * 117.49516 * 359.97438 * 5 2 1 8 8 N 1.46507 * 109.46751 * 175.09285 * 7 5 2 9 9 C 1.34769 * 119.99898 * 180.27931 * 8 7 5 10 10 O 1.21353 * 120.00181 * 359.72034 * 9 8 7 11 11 C 1.49455 * 120.00030 * 179.72514 * 9 8 7 12 12 O 1.21343 * 119.99782 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99866 * 180.02562 * 11 9 8 14 14 C 1.46500 * 119.99667 * 179.97438 * 13 11 9 15 15 C 1.50696 * 109.46968 * 179.97438 * 14 13 11 16 16 C 1.38303 * 119.93034 * 269.72712 * 15 14 13 17 17 C 1.38098 * 120.07127 * 179.72666 * 16 15 14 18 18 C 1.38888 * 119.92692 * 0.54641 * 17 16 15 19 19 O 1.35749 * 120.06721 * 179.75140 * 18 17 16 20 20 C 1.34825 * 116.99830 * 174.43929 * 19 18 17 21 21 H 1.08001 * 120.00314 * 5.05432 * 20 19 18 22 22 C 1.38662 * 120.00154 * 185.05459 * 20 19 18 23 23 N 1.31555 * 119.99472 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00133 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47060 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46997 * 119.99899 * 24 22 20 27 27 H 1.48504 * 109.46839 * 240.00069 * 24 22 20 28 28 C 1.38876 * 119.86230 * 359.72277 * 18 17 16 29 29 C 1.38096 * 119.93067 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.46825 * 205.69139 * 1 2 3 31 31 H 1.09008 * 109.46918 * 325.68143 * 1 2 3 32 32 H 1.08993 * 109.47055 * 85.68438 * 1 2 3 33 33 H 1.08997 * 117.51095 * 0.02562 * 4 2 1 34 34 H 1.09000 * 117.51238 * 214.95425 * 4 2 1 35 35 H 1.08998 * 109.47217 * 55.09670 * 7 5 2 36 36 H 1.09002 * 109.47677 * 295.08791 * 7 5 2 37 37 H 0.97000 * 119.99676 * 0.02562 * 8 7 5 38 38 H 0.97000 * 119.99948 * 359.97438 * 13 11 9 39 39 H 1.08998 * 109.47020 * 299.99462 * 14 13 11 40 40 H 1.09002 * 109.47131 * 59.99818 * 14 13 11 41 41 H 1.08002 * 119.96519 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.03964 * 180.26761 * 17 16 15 43 43 H 0.96999 * 119.99395 * 180.02562 * 23 22 20 44 44 H 1.07997 * 120.03394 * 179.97438 * 28 18 17 45 45 H 1.08003 * 119.96825 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2372 -1.1215 0.7649 5 6 2.2365 -1.1209 -0.7651 6 1 3.1713 -0.8749 -1.2687 7 6 1.3588 -2.1562 -1.4712 8 7 2.2059 -3.0720 -2.2395 9 6 1.6465 -4.0695 -2.9523 10 8 0.4414 -4.2125 -2.9537 11 6 2.5102 -4.9999 -3.7410 12 8 3.7152 -4.8568 -3.7399 13 7 1.9506 -5.9973 -4.4542 14 6 2.7973 -6.9089 -5.2278 15 6 1.9325 -7.9255 -5.9276 16 6 1.6265 -9.1197 -5.3007 17 6 0.8296 -10.0509 -5.9371 18 6 0.3447 -9.7919 -7.2125 19 8 -0.4348 -10.7075 -7.8427 20 6 -0.9661 -10.3467 -9.0281 21 1 -0.6994 -9.3997 -9.4737 22 6 -1.8551 -11.1914 -9.6753 23 7 -2.1797 -12.3451 -9.1327 24 14 -2.5908 -10.6918 -11.3180 25 1 -2.0681 -9.3581 -11.7094 26 1 -2.2200 -11.6920 -12.3511 27 1 -4.0697 -10.6279 -11.1991 28 6 0.6582 -8.5942 -7.8415 29 6 1.4513 -7.6648 -7.1977 30 1 -0.3633 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5794 32 1 -0.3633 0.0773 -1.0247 33 1 1.6125 -1.8597 1.2678 34 1 3.1726 -0.8760 1.2679 35 1 0.6684 -1.6486 -2.1448 36 1 0.7938 -2.7204 -0.7291 37 1 3.1692 -2.9579 -2.2380 38 1 0.9873 -6.1114 -4.4554 39 1 3.3618 -6.3410 -5.9672 40 1 3.4881 -7.4201 -4.5573 41 1 2.0079 -9.3226 -4.3109 42 1 0.5875 -10.9815 -5.4454 43 1 -2.8013 -12.9361 -9.5856 44 1 0.2830 -8.3901 -8.8334 45 1 1.6952 -6.7329 -7.6862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325692686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:06 Heat of formation + Delta-G solvation = -54.643155 kcal Electronic energy + Delta-G solvation = -26378.385562 eV Core-core repulsion = 22362.299712 eV Total energy + Delta-G solvation = -4016.085850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 8.51 seconds Orbital eigenvalues (eV) -40.75232 -39.31844 -38.92021 -38.20837 -36.92492 -35.14683 -34.18549 -32.38581 -30.33293 -30.10937 -29.24581 -27.94832 -26.18028 -25.12587 -23.29185 -22.08258 -22.06220 -20.77698 -20.69221 -20.08924 -18.50874 -18.08575 -17.22253 -17.02447 -16.47682 -16.13511 -15.54658 -15.21532 -15.02824 -14.62614 -14.45593 -14.35808 -14.15619 -13.80585 -13.73558 -13.62810 -13.39176 -13.31297 -12.82737 -12.78521 -12.64443 -12.15954 -12.04100 -11.83344 -11.71254 -11.70926 -11.40685 -10.99908 -10.83508 -10.71222 -10.58406 -10.48443 -10.47214 -9.72623 -9.49215 -9.44411 -9.18657 -8.92755 -8.30507 -7.35640 -6.54292 -4.12932 1.32132 1.90237 2.11706 2.40315 3.07391 3.09480 3.11147 3.15083 3.19681 3.62912 3.89675 4.06943 4.30236 4.31357 4.39590 4.54443 4.70391 4.82253 5.00045 5.07543 5.10681 5.18565 5.23702 5.32288 5.33929 5.35490 5.36186 5.54644 5.62002 5.64328 5.74244 5.78312 5.81077 5.95024 6.10395 6.22708 6.31910 6.57216 6.77217 6.81237 6.94114 7.11337 7.23761 7.30990 7.33800 7.63230 7.69245 7.90519 7.91730 8.91123 9.58830 10.63189 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.001753 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.258666 B =15967.954028 C =16655.375533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 H 0.108 0.892 4 C -0.172 4.172 5 C -0.171 4.171 6 H 0.113 0.887 7 C 0.150 3.850 8 N -0.701 5.701 9 C 0.506 3.494 10 O -0.517 6.517 11 C 0.502 3.498 12 O -0.530 6.530 13 N -0.687 5.687 14 C 0.177 3.823 15 C -0.220 4.220 16 C -0.052 4.052 17 C -0.195 4.195 18 C 0.162 3.838 19 O -0.172 6.172 20 C -0.393 4.393 21 H 0.095 0.905 22 C 0.040 3.960 23 N -0.858 5.858 24 Si 0.943 3.057 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.237 4.237 29 C -0.048 4.048 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.415 0.585 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.271 0.729 44 H 0.129 0.871 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 21.248 15.345 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.209 4.209 5 C -0.189 4.189 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.356 5.356 9 C 0.286 3.714 10 O -0.392 6.392 11 C 0.282 3.718 12 O -0.408 6.408 13 N -0.340 5.340 14 C 0.056 3.944 15 C -0.222 4.222 16 C -0.071 4.071 17 C -0.214 4.214 18 C 0.107 3.893 19 O -0.074 6.074 20 C -0.469 4.469 21 H 0.112 0.888 22 C -0.165 4.165 23 N -0.492 5.492 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.200 1.200 28 C -0.256 4.256 29 C -0.067 4.067 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.249 0.751 38 H 0.251 0.749 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.147 0.853 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.972 20.777 15.322 27.019 hybrid contribution -0.312 0.264 -0.872 0.963 sum 7.660 21.041 14.451 26.650 Atomic orbital electron populations 1.21413 0.92478 1.02385 1.02337 1.22398 0.95713 0.94343 1.03524 0.87429 1.23265 1.02828 1.01575 0.93249 1.22537 1.01611 1.00175 0.94622 0.86914 1.20976 0.92238 0.89435 0.94699 1.45737 1.11893 1.29885 1.48040 1.20307 0.88264 0.82128 0.80657 1.90793 1.14356 1.71648 1.62418 1.20049 0.88028 0.82481 0.81200 1.90744 1.14223 1.72296 1.63514 1.46255 1.12545 1.28901 1.46272 1.20148 0.91446 0.89077 0.93749 1.19137 1.08939 0.97051 0.97033 1.20532 0.95812 0.92634 0.98107 1.20218 1.05194 1.01672 0.94340 1.19450 0.90085 0.88459 0.91298 1.83976 1.54441 1.35932 1.33100 1.21420 1.25140 1.05748 0.94625 0.88807 1.25333 0.96120 0.95183 0.99848 1.70046 1.31950 1.08812 1.38412 0.85619 0.78911 0.78854 0.79898 1.19017 1.20051 1.20044 1.21158 1.06092 0.95949 1.02430 1.20642 0.94907 0.97574 0.93570 0.92176 0.91867 0.91791 0.88353 0.88483 0.90448 0.90727 0.75067 0.74864 0.90902 0.90861 0.86871 0.86280 0.91899 0.85330 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 9.20 37.16 0.34 -0.30 16 2 C -0.14 -0.71 6.41 -90.58 -0.58 -1.29 16 3 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.17 -0.88 9.83 -26.69 -0.26 -1.14 16 5 C -0.17 -0.96 5.85 -90.62 -0.53 -1.49 16 6 H 0.11 0.56 8.04 -51.93 -0.42 0.14 16 7 C 0.15 1.14 5.03 -4.04 -0.02 1.12 16 8 N -0.70 -6.41 5.55 -60.72 -0.34 -6.74 16 9 C 0.51 6.14 7.89 -11.59 -0.09 6.05 16 10 O -0.52 -7.52 16.48 5.49 0.09 -7.43 16 11 C 0.50 6.56 7.89 -11.58 -0.09 6.47 16 12 O -0.53 -7.69 16.48 5.50 0.09 -7.60 16 13 N -0.69 -9.00 5.54 -61.91 -0.34 -9.34 16 14 C 0.18 2.38 5.80 -5.20 -0.03 2.35 16 15 C -0.22 -3.49 5.25 -104.58 -0.55 -4.04 16 16 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 17 C -0.19 -3.92 9.99 -39.39 -0.39 -4.32 16 18 C 0.16 3.76 6.65 -39.10 -0.26 3.50 16 19 O -0.17 -4.77 9.76 0.06 0.00 -4.77 16 20 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 21 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -24.63 13.67 55.48 0.76 -23.88 16 24 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 28 C -0.24 -4.91 9.17 -39.40 -0.36 -5.27 16 29 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 30 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 31 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 32 H 0.06 0.33 7.83 -51.93 -0.41 -0.07 16 33 H 0.10 0.51 7.94 -51.93 -0.41 0.10 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.63 7.77 -51.93 -0.40 0.23 16 36 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 37 H 0.41 3.24 7.87 -40.82 -0.32 2.92 16 38 H 0.41 5.49 7.94 -40.82 -0.32 5.16 16 39 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 45 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -31.30 388.75 -8.49 -39.79 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.19 Total: 9.31 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -3.40 Total: -10.25 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.08 Total: -39.96 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.18 Total: -19.80 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.30 -8.49 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325692686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.853 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.52 seconds