Wall clock time and date at job start Tue Mar 31 2020 17:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 115.55985 * 2 1 4 4 C 1.53072 * 117.51586 * 145.70455 * 2 1 3 5 5 C 1.52998 * 117.49917 * 214.31914 * 2 1 3 6 6 H 1.08996 * 117.50333 * 144.99602 * 5 2 1 7 7 C 1.53000 * 117.49516 * 359.97438 * 5 2 1 8 8 N 1.46507 * 109.46751 * 175.09285 * 7 5 2 9 9 C 1.34769 * 119.99898 * 180.27931 * 8 7 5 10 10 O 1.21353 * 120.00181 * 359.72034 * 9 8 7 11 11 C 1.49455 * 120.00030 * 179.72514 * 9 8 7 12 12 O 1.21343 * 119.99782 * 359.97438 * 11 9 8 13 13 N 1.34783 * 119.99866 * 180.02562 * 11 9 8 14 14 C 1.46500 * 119.99667 * 179.97438 * 13 11 9 15 15 C 1.50696 * 109.46968 * 179.97438 * 14 13 11 16 16 C 1.38303 * 119.93034 * 269.72712 * 15 14 13 17 17 C 1.38098 * 120.07127 * 179.72666 * 16 15 14 18 18 C 1.38888 * 119.92692 * 0.54641 * 17 16 15 19 19 O 1.35749 * 120.06721 * 179.75140 * 18 17 16 20 20 C 1.34825 * 116.99830 * 174.43929 * 19 18 17 21 21 H 1.08001 * 120.00314 * 5.05432 * 20 19 18 22 22 C 1.38662 * 120.00154 * 185.05459 * 20 19 18 23 23 N 1.31555 * 119.99472 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00133 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47060 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46997 * 119.99899 * 24 22 20 27 27 H 1.48504 * 109.46839 * 240.00069 * 24 22 20 28 28 C 1.38876 * 119.86230 * 359.72277 * 18 17 16 29 29 C 1.38096 * 119.93067 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.46825 * 205.69139 * 1 2 3 31 31 H 1.09008 * 109.46918 * 325.68143 * 1 2 3 32 32 H 1.08993 * 109.47055 * 85.68438 * 1 2 3 33 33 H 1.08997 * 117.51095 * 0.02562 * 4 2 1 34 34 H 1.09000 * 117.51238 * 214.95425 * 4 2 1 35 35 H 1.08998 * 109.47217 * 55.09670 * 7 5 2 36 36 H 1.09002 * 109.47677 * 295.08791 * 7 5 2 37 37 H 0.97000 * 119.99676 * 0.02562 * 8 7 5 38 38 H 0.97000 * 119.99948 * 359.97438 * 13 11 9 39 39 H 1.08998 * 109.47020 * 299.99462 * 14 13 11 40 40 H 1.09002 * 109.47131 * 59.99818 * 14 13 11 41 41 H 1.08002 * 119.96519 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.03964 * 180.26761 * 17 16 15 43 43 H 0.96999 * 119.99395 * 180.02562 * 23 22 20 44 44 H 1.07997 * 120.03394 * 179.97438 * 28 18 17 45 45 H 1.08003 * 119.96825 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2372 -1.1215 0.7649 5 6 2.2365 -1.1209 -0.7651 6 1 3.1713 -0.8749 -1.2687 7 6 1.3588 -2.1562 -1.4712 8 7 2.2059 -3.0720 -2.2395 9 6 1.6465 -4.0695 -2.9523 10 8 0.4414 -4.2125 -2.9537 11 6 2.5102 -4.9999 -3.7410 12 8 3.7152 -4.8568 -3.7399 13 7 1.9506 -5.9973 -4.4542 14 6 2.7973 -6.9089 -5.2278 15 6 1.9325 -7.9255 -5.9276 16 6 1.6265 -9.1197 -5.3007 17 6 0.8296 -10.0509 -5.9371 18 6 0.3447 -9.7919 -7.2125 19 8 -0.4348 -10.7075 -7.8427 20 6 -0.9661 -10.3467 -9.0281 21 1 -0.6994 -9.3997 -9.4737 22 6 -1.8551 -11.1914 -9.6753 23 7 -2.1797 -12.3451 -9.1327 24 14 -2.5908 -10.6918 -11.3180 25 1 -2.0681 -9.3581 -11.7094 26 1 -2.2200 -11.6920 -12.3511 27 1 -4.0697 -10.6279 -11.1991 28 6 0.6582 -8.5942 -7.8415 29 6 1.4513 -7.6648 -7.1977 30 1 -0.3633 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5794 32 1 -0.3633 0.0773 -1.0247 33 1 1.6125 -1.8597 1.2678 34 1 3.1726 -0.8760 1.2679 35 1 0.6684 -1.6486 -2.1448 36 1 0.7938 -2.7204 -0.7291 37 1 3.1692 -2.9579 -2.2380 38 1 0.9873 -6.1114 -4.4554 39 1 3.3618 -6.3410 -5.9672 40 1 3.4881 -7.4201 -4.5573 41 1 2.0079 -9.3226 -4.3109 42 1 0.5875 -10.9815 -5.4454 43 1 -2.8013 -12.9361 -9.5856 44 1 0.2830 -8.3901 -8.8334 45 1 1.6952 -6.7329 -7.6862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325692686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:00 Heat of formation + Delta-G solvation = -75.858552 kcal Electronic energy + Delta-G solvation = -26379.305530 eV Core-core repulsion = 22362.299712 eV Total energy + Delta-G solvation = -4017.005818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74695 -40.84248 -39.85716 -38.94512 -38.50080 -36.18126 -35.19652 -34.28156 -31.86600 -31.53850 -29.75898 -28.66894 -27.73462 -26.65223 -24.33896 -23.66474 -22.51733 -22.18228 -21.55923 -20.84381 -19.89461 -19.39137 -18.81329 -18.07717 -17.23656 -17.07725 -16.68308 -16.48699 -16.26902 -16.06318 -15.64586 -15.53768 -15.49207 -15.02702 -14.81089 -14.65201 -14.40833 -14.34804 -14.13440 -13.84118 -13.67124 -13.31326 -13.11646 -13.07508 -12.85537 -12.56902 -12.44562 -12.37329 -12.26990 -12.16097 -12.10011 -11.21298 -11.06477 -11.01514 -10.83581 -10.63762 -10.30684 -10.21360 -9.82221 -9.03470 -8.49386 -6.17551 0.32384 0.47974 0.57071 1.35411 1.36234 1.45291 1.53453 2.12222 2.16337 2.55311 2.79717 2.90992 3.16319 3.45516 3.47979 3.60379 3.82136 3.88335 3.92041 4.01248 4.16030 4.22036 4.42848 4.43991 4.54927 4.55456 4.65162 4.67549 4.78867 4.89985 4.93315 4.97901 5.02430 5.06235 5.13102 5.14619 5.22729 5.25163 5.28625 5.42844 5.50236 5.68043 5.71882 5.90986 6.00648 6.14921 6.33446 6.69804 6.91887 6.95528 7.74488 8.73612 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.001753 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.258666 B =15967.954028 C =16655.375533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.139 4.139 3 H 0.119 0.881 4 C -0.171 4.171 5 C -0.174 4.174 6 H 0.123 0.877 7 C 0.149 3.851 8 N -0.685 5.685 9 C 0.507 3.493 10 O -0.546 6.546 11 C 0.508 3.492 12 O -0.542 6.542 13 N -0.687 5.687 14 C 0.182 3.818 15 C -0.188 4.188 16 C -0.042 4.042 17 C -0.206 4.206 18 C 0.123 3.877 19 O -0.229 6.229 20 C -0.414 4.414 21 H 0.104 0.896 22 C -0.022 4.022 23 N -0.918 5.918 24 Si 1.018 2.982 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.269 1.269 28 C -0.245 4.245 29 C -0.044 4.044 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.421 0.579 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.150 0.850 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 24.432 16.349 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 H 0.137 0.863 4 C -0.208 4.208 5 C -0.192 4.192 6 H 0.141 0.859 7 C 0.027 3.973 8 N -0.339 5.339 9 C 0.287 3.713 10 O -0.424 6.424 11 C 0.289 3.711 12 O -0.420 6.420 13 N -0.339 5.339 14 C 0.060 3.940 15 C -0.189 4.189 16 C -0.061 4.061 17 C -0.225 4.225 18 C 0.072 3.928 19 O -0.135 6.135 20 C -0.490 4.490 21 H 0.121 0.879 22 C -0.220 4.220 23 N -0.556 5.556 24 Si 0.838 3.162 25 H -0.174 1.174 26 H -0.193 1.193 27 H -0.194 1.194 28 C -0.265 4.265 29 C -0.063 4.063 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.259 0.741 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.168 0.832 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.959 24.025 16.374 30.732 hybrid contribution -0.646 -0.474 -0.877 1.188 sum 9.312 23.551 15.496 29.691 Atomic orbital electron populations 1.21435 0.92705 1.02515 1.02199 1.22481 0.95618 0.94719 1.02918 0.86334 1.23324 1.03260 1.01454 0.92767 1.22493 1.01773 1.00002 0.94924 0.85884 1.21050 0.92424 0.89476 0.94387 1.45745 1.12508 1.28870 1.46737 1.20168 0.87716 0.82527 0.80874 1.90791 1.15338 1.72557 1.63687 1.20101 0.87823 0.82305 0.80896 1.90746 1.14700 1.72616 1.63960 1.46113 1.12502 1.28959 1.46316 1.20145 0.90901 0.88665 0.94289 1.19487 1.06418 0.96892 0.96141 1.20922 0.94103 0.91803 0.99253 1.20468 1.05815 1.02612 0.93629 1.20019 0.90720 0.89366 0.92682 1.83946 1.57220 1.38211 1.34107 1.21884 1.25621 1.06372 0.95092 0.87864 1.26593 0.96397 0.95025 1.03963 1.70186 1.33969 1.10615 1.40830 0.84528 0.77947 0.79110 0.74632 1.17397 1.19336 1.19449 1.21254 1.06872 0.95927 1.02409 1.20979 0.93473 0.97838 0.93987 0.92680 0.91057 0.92182 0.88702 0.87438 0.90914 0.91242 0.74116 0.74814 0.89591 0.89349 0.83229 0.86622 0.91790 0.86160 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.20 71.98 0.66 -0.47 16 2 C -0.14 -1.11 6.41 -10.77 -0.07 -1.17 16 3 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 4 C -0.17 -1.38 9.83 30.62 0.30 -1.08 16 5 C -0.17 -1.58 5.85 -10.79 -0.06 -1.64 16 6 H 0.12 0.89 8.04 -2.39 -0.02 0.87 16 7 C 0.15 2.04 5.03 86.38 0.43 2.47 16 8 N -0.69 -11.06 5.55 -464.40 -2.58 -13.64 16 9 C 0.51 11.26 7.89 87.27 0.69 11.95 16 10 O -0.55 -15.10 16.48 -3.26 -0.05 -15.15 16 11 C 0.51 11.77 7.89 87.27 0.69 12.45 16 12 O -0.54 -13.91 16.48 -3.22 -0.05 -13.96 16 13 N -0.69 -15.64 5.54 -468.14 -2.59 -18.24 16 14 C 0.18 4.09 5.80 85.63 0.50 4.58 16 15 C -0.19 -5.34 5.25 -19.83 -0.10 -5.44 16 16 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 17 C -0.21 -8.33 9.99 22.39 0.22 -8.11 16 18 C 0.12 5.92 6.65 22.58 0.15 6.07 16 19 O -0.23 -13.50 9.76 -22.68 -0.22 -13.72 16 20 C -0.41 -23.67 9.49 67.92 0.64 -23.02 16 21 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 22 C -0.02 -1.23 5.49 84.84 0.47 -0.76 16 23 N -0.92 -55.76 13.67 21.62 0.30 -55.47 16 24 Si 1.02 42.34 29.55 68.60 2.03 44.36 16 25 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 27 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 28 C -0.25 -10.18 9.17 22.39 0.21 -9.97 16 29 C -0.04 -1.41 9.69 22.25 0.22 -1.20 16 30 H 0.05 0.52 7.90 -2.39 -0.02 0.50 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.56 7.83 -2.39 -0.02 0.54 16 33 H 0.09 0.84 7.94 -2.39 -0.02 0.82 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.09 7.77 -2.39 -0.02 1.08 16 36 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 37 H 0.42 5.52 7.87 -92.71 -0.73 4.79 16 38 H 0.42 9.78 7.94 -92.71 -0.74 9.05 16 39 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 42 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 43 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 45 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -72.03 388.75 1.55 -70.48 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.43 Total: 31.77 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 5.16 Total: -16.44 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -4.88 Total: -87.34 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.33 Total: -42.84 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -72.03 1.55 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325692686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.379 kcal (2) G-P(sol) polarization free energy of solvation -72.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds