Wall clock time and date at job start Tue Mar 31 2020 17:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.56405 * 2 1 4 4 C 1.53002 * 117.49727 * 145.69081 * 2 1 3 5 5 C 1.53004 * 60.00091 * 107.48671 * 4 2 1 6 6 H 1.09001 * 117.49981 * 252.48479 * 5 4 2 7 7 C 1.52999 * 117.49787 * 107.48715 * 5 4 2 8 8 N 1.46502 * 109.46870 * 116.39130 * 7 5 4 9 9 C 1.34777 * 119.99576 * 179.97438 * 8 7 5 10 10 O 1.21345 * 120.00523 * 0.02562 * 9 8 7 11 11 C 1.49447 * 119.99616 * 179.72697 * 9 8 7 12 12 O 1.21351 * 120.00413 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00035 * 180.02562 * 11 9 8 14 14 C 1.46505 * 120.00188 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.47219 * 179.97438 * 14 13 11 16 16 C 1.38301 * 119.92708 * 269.72427 * 15 14 13 17 17 C 1.38106 * 120.06436 * 179.72353 * 16 15 14 18 18 C 1.38876 * 119.93202 * 0.57414 * 17 16 15 19 19 O 1.35748 * 120.06891 * 179.68435 * 18 17 16 20 20 C 1.34834 * 117.00071 * 174.48710 * 19 18 17 21 21 H 1.07999 * 119.99613 * 5.04940 * 20 19 18 22 22 C 1.38651 * 120.00078 * 185.05679 * 20 19 18 23 23 N 1.31558 * 120.00255 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47036 * 90.00030 * 24 22 20 26 26 H 1.48502 * 109.47398 * 209.99433 * 24 22 20 27 27 H 1.48493 * 109.47340 * 329.99796 * 24 22 20 28 28 C 1.38883 * 119.86114 * 359.69655 * 18 17 16 29 29 C 1.38096 * 119.92889 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47520 * 205.69433 * 1 2 3 31 31 H 1.09005 * 109.47367 * 325.68957 * 1 2 3 32 32 H 1.09003 * 109.47619 * 85.68804 * 1 2 3 33 33 H 1.09004 * 117.49978 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.51831 * 214.97210 * 4 2 1 35 35 H 1.09001 * 109.46881 * 356.39553 * 7 5 4 36 36 H 1.08995 * 109.47329 * 236.39468 * 7 5 4 37 37 H 0.97000 * 119.99991 * 0.02562 * 8 7 5 38 38 H 0.96996 * 120.00353 * 359.97438 * 13 11 9 39 39 H 1.08998 * 109.46659 * 299.99190 * 14 13 11 40 40 H 1.08999 * 109.47024 * 59.99529 * 14 13 11 41 41 H 1.08003 * 119.97007 * 359.97438 * 16 15 14 42 42 H 1.08001 * 120.03263 * 180.27173 * 17 16 15 43 43 H 0.96996 * 120.00224 * 180.02562 * 23 22 20 44 44 H 1.07994 * 120.03289 * 180.02562 * 28 18 17 45 45 H 1.08007 * 119.96366 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7651 6 1 1.6114 -1.8588 -1.2683 7 6 3.5489 -0.7760 -1.4715 8 7 4.0082 -1.9346 -2.2415 9 6 5.1519 -1.8618 -2.9509 10 8 5.8014 -0.8368 -2.9514 11 6 5.6236 -3.0456 -3.7315 12 8 4.9767 -4.0723 -3.7271 13 7 6.7676 -2.9731 -4.4405 14 6 7.2297 -4.1334 -5.2062 15 6 8.5216 -3.7930 -5.9035 16 6 8.4972 -3.2584 -7.1787 17 6 9.6792 -2.9401 -7.8182 18 6 10.8935 -3.1684 -7.1840 19 8 12.0572 -2.8625 -7.8125 20 6 13.1930 -3.0016 -7.0993 21 1 13.1579 -3.4198 -6.1042 22 6 14.4058 -2.6075 -7.6434 23 7 14.4486 -2.0984 -8.8557 24 14 15.9793 -2.7995 -6.6550 25 1 16.5741 -4.1331 -6.9255 26 1 16.9425 -1.7393 -7.0468 27 1 15.6722 -2.6789 -5.2072 28 6 10.9147 -3.7106 -5.9055 29 6 9.7291 -4.0214 -5.2692 30 1 -0.3634 -0.9260 0.4456 31 1 -0.3634 0.8489 0.5793 32 1 -0.3634 0.0773 -1.0247 33 1 1.6111 -1.8583 1.2686 34 1 3.1716 -0.8756 1.2683 35 1 4.3021 -0.5112 -0.7295 36 1 3.3890 0.0669 -2.1438 37 1 3.4888 -2.7538 -2.2415 38 1 7.2845 -2.1524 -4.4444 39 1 7.3915 -4.9734 -4.5307 40 1 6.4772 -4.4028 -5.9473 41 1 7.5528 -3.0859 -7.6735 42 1 9.6595 -2.5185 -8.8123 43 1 15.2972 -1.8231 -9.2365 44 1 11.8573 -3.8889 -5.4096 45 1 9.7449 -4.4427 -4.2748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325692689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:27 Heat of formation + Delta-G solvation = -55.283791 kcal Electronic energy + Delta-G solvation = -26236.713985 eV Core-core repulsion = 22220.600356 eV Total energy + Delta-G solvation = -4016.113630 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74540 -39.29881 -38.86901 -38.18792 -36.92396 -35.18520 -34.22087 -32.38494 -30.33377 -30.12558 -29.70977 -27.47019 -26.12315 -25.10274 -23.29147 -22.08101 -21.69747 -21.22648 -20.70236 -20.22775 -18.70764 -18.08709 -17.09902 -16.98396 -16.30158 -16.04172 -15.61018 -15.18834 -14.93346 -14.71502 -14.57646 -14.40367 -14.11843 -13.81665 -13.73141 -13.62822 -13.43281 -13.27022 -12.81571 -12.76501 -12.70234 -12.15597 -11.95257 -11.87096 -11.81166 -11.70715 -11.40117 -10.98348 -10.84448 -10.71848 -10.61930 -10.49676 -10.48152 -9.72415 -9.49645 -9.44647 -9.18703 -8.92190 -8.30405 -7.35610 -6.53947 -4.12800 1.32016 1.90210 2.11777 2.39987 3.07997 3.09515 3.10962 3.14393 3.19121 3.62010 3.89925 4.05999 4.29103 4.32636 4.43980 4.54696 4.68965 4.81598 5.00334 5.03483 5.10695 5.18612 5.25686 5.28138 5.31580 5.33456 5.33990 5.54401 5.61973 5.62648 5.74266 5.78181 5.78594 5.94747 6.10408 6.22660 6.31941 6.57249 6.77245 6.81117 6.94000 7.11222 7.23762 7.30914 7.33798 7.63095 7.69318 7.90612 7.91663 8.91282 9.58815 10.63415 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.001682 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.477395 B =16646.362820 C =17174.079759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.108 0.892 4 C -0.171 4.171 5 C -0.170 4.170 6 H 0.113 0.887 7 C 0.149 3.851 8 N -0.701 5.701 9 C 0.506 3.494 10 O -0.517 6.517 11 C 0.502 3.498 12 O -0.530 6.530 13 N -0.687 5.687 14 C 0.177 3.823 15 C -0.220 4.220 16 C -0.052 4.052 17 C -0.195 4.195 18 C 0.162 3.838 19 O -0.172 6.172 20 C -0.394 4.394 21 H 0.094 0.906 22 C 0.041 3.959 23 N -0.858 5.858 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.237 4.237 29 C -0.048 4.048 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.415 0.585 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.272 0.728 44 H 0.129 0.871 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.133 1.162 15.742 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.126 0.874 4 C -0.208 4.208 5 C -0.188 4.188 6 H 0.131 0.869 7 C 0.026 3.974 8 N -0.355 5.355 9 C 0.287 3.713 10 O -0.392 6.392 11 C 0.282 3.718 12 O -0.408 6.408 13 N -0.340 5.340 14 C 0.056 3.944 15 C -0.222 4.222 16 C -0.071 4.071 17 C -0.214 4.214 18 C 0.107 3.893 19 O -0.074 6.074 20 C -0.470 4.470 21 H 0.111 0.889 22 C -0.164 4.164 23 N -0.492 5.492 24 Si 0.767 3.233 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.256 4.256 29 C -0.067 4.067 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.251 0.749 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.856 1.345 15.330 27.554 hybrid contribution 0.873 -0.123 0.509 1.018 sum -21.983 1.221 15.840 27.123 Atomic orbital electron populations 1.21385 0.92453 1.02168 1.02138 1.22401 0.95530 0.94645 1.03578 0.87397 1.23288 1.02896 1.01368 0.93276 1.22567 0.98347 1.03337 0.94590 0.86898 1.21000 0.93750 0.88008 0.94675 1.45728 1.24216 1.17500 1.48087 1.20305 0.81805 0.88592 0.80640 1.90792 1.55017 1.31176 1.62227 1.20048 0.82519 0.88045 0.81148 1.90747 1.55732 1.31051 1.63254 1.46255 1.22937 1.18113 1.46663 1.20148 0.93617 0.86748 0.93901 1.19137 0.93114 1.13101 0.96837 1.20534 0.96747 0.96108 0.93693 1.20215 0.90003 1.09502 1.01703 1.19448 0.87603 0.91510 0.90738 1.83977 1.11416 1.73590 1.38453 1.21369 0.82269 1.43272 1.00077 0.88867 1.25323 0.98775 0.95883 0.96443 1.70034 1.27113 1.37913 1.14167 0.85687 0.79888 0.78452 0.79287 1.19783 1.20163 1.19111 1.21156 0.98635 1.08855 0.96971 1.20640 0.91606 0.96481 0.97959 0.92421 0.91894 0.91982 0.88443 0.88416 0.90724 0.90474 0.75050 0.74867 0.90901 0.90860 0.86868 0.86283 0.91847 0.85339 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.19 37.16 0.38 -0.15 16 2 C -0.14 -0.72 6.13 -90.62 -0.56 -1.27 16 3 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.17 -0.87 9.82 -26.73 -0.26 -1.14 16 5 C -0.17 -0.95 5.57 -90.62 -0.50 -1.46 16 6 H 0.11 0.58 8.04 -51.93 -0.42 0.16 16 7 C 0.15 1.12 5.96 -4.04 -0.02 1.10 16 8 N -0.70 -6.38 5.55 -60.73 -0.34 -6.72 16 9 C 0.51 6.14 7.89 -11.59 -0.09 6.05 16 10 O -0.52 -7.54 16.48 5.50 0.09 -7.45 16 11 C 0.50 6.56 7.89 -11.59 -0.09 6.47 16 12 O -0.53 -7.69 16.48 5.50 0.09 -7.60 16 13 N -0.69 -9.01 5.54 -61.91 -0.34 -9.35 16 14 C 0.18 2.38 5.80 -5.19 -0.03 2.35 16 15 C -0.22 -3.50 5.25 -104.58 -0.55 -4.05 16 16 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 17 C -0.19 -3.92 9.99 -39.39 -0.39 -4.32 16 18 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 19 O -0.17 -4.78 9.76 0.04 0.00 -4.78 16 20 C -0.39 -10.72 9.49 30.88 0.29 -10.43 16 21 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 24 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 C -0.24 -4.91 9.17 -39.39 -0.36 -5.27 16 29 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 30 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.44 8.05 -51.93 -0.42 0.02 16 34 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 35 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.41 3.24 7.87 -40.82 -0.32 2.92 16 38 H 0.41 5.50 7.94 -40.82 -0.32 5.17 16 39 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 45 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -31.31 390.77 -8.41 -39.72 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.22 Total: 9.18 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.32 Total: -10.06 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.08 Total: -39.94 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.31 -8.41 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325692689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.564 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds