Wall clock time and date at job start Tue Mar 31 2020 17:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.56405 * 2 1 4 4 C 1.53002 * 117.49727 * 145.69081 * 2 1 3 5 5 C 1.53004 * 60.00091 * 107.48671 * 4 2 1 6 6 H 1.09001 * 117.49981 * 252.48479 * 5 4 2 7 7 C 1.52999 * 117.49787 * 107.48715 * 5 4 2 8 8 N 1.46502 * 109.46870 * 116.39130 * 7 5 4 9 9 C 1.34777 * 119.99576 * 179.97438 * 8 7 5 10 10 O 1.21345 * 120.00523 * 0.02562 * 9 8 7 11 11 C 1.49447 * 119.99616 * 179.72697 * 9 8 7 12 12 O 1.21351 * 120.00413 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00035 * 180.02562 * 11 9 8 14 14 C 1.46505 * 120.00188 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.47219 * 179.97438 * 14 13 11 16 16 C 1.38301 * 119.92708 * 269.72427 * 15 14 13 17 17 C 1.38106 * 120.06436 * 179.72353 * 16 15 14 18 18 C 1.38876 * 119.93202 * 0.57414 * 17 16 15 19 19 O 1.35748 * 120.06891 * 179.68435 * 18 17 16 20 20 C 1.34834 * 117.00071 * 174.48710 * 19 18 17 21 21 H 1.07999 * 119.99613 * 5.04940 * 20 19 18 22 22 C 1.38651 * 120.00078 * 185.05679 * 20 19 18 23 23 N 1.31558 * 120.00255 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47036 * 90.00030 * 24 22 20 26 26 H 1.48502 * 109.47398 * 209.99433 * 24 22 20 27 27 H 1.48493 * 109.47340 * 329.99796 * 24 22 20 28 28 C 1.38883 * 119.86114 * 359.69655 * 18 17 16 29 29 C 1.38096 * 119.92889 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47520 * 205.69433 * 1 2 3 31 31 H 1.09005 * 109.47367 * 325.68957 * 1 2 3 32 32 H 1.09003 * 109.47619 * 85.68804 * 1 2 3 33 33 H 1.09004 * 117.49978 * 359.97438 * 4 2 1 34 34 H 1.09000 * 117.51831 * 214.97210 * 4 2 1 35 35 H 1.09001 * 109.46881 * 356.39553 * 7 5 4 36 36 H 1.08995 * 109.47329 * 236.39468 * 7 5 4 37 37 H 0.97000 * 119.99991 * 0.02562 * 8 7 5 38 38 H 0.96996 * 120.00353 * 359.97438 * 13 11 9 39 39 H 1.08998 * 109.46659 * 299.99190 * 14 13 11 40 40 H 1.08999 * 109.47024 * 59.99529 * 14 13 11 41 41 H 1.08003 * 119.97007 * 359.97438 * 16 15 14 42 42 H 1.08001 * 120.03263 * 180.27173 * 17 16 15 43 43 H 0.96996 * 120.00224 * 180.02562 * 23 22 20 44 44 H 1.07994 * 120.03289 * 180.02562 * 28 18 17 45 45 H 1.08007 * 119.96366 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7651 6 1 1.6114 -1.8588 -1.2683 7 6 3.5489 -0.7760 -1.4715 8 7 4.0082 -1.9346 -2.2415 9 6 5.1519 -1.8618 -2.9509 10 8 5.8014 -0.8368 -2.9514 11 6 5.6236 -3.0456 -3.7315 12 8 4.9767 -4.0723 -3.7271 13 7 6.7676 -2.9731 -4.4405 14 6 7.2297 -4.1334 -5.2062 15 6 8.5216 -3.7930 -5.9035 16 6 8.4972 -3.2584 -7.1787 17 6 9.6792 -2.9401 -7.8182 18 6 10.8935 -3.1684 -7.1840 19 8 12.0572 -2.8625 -7.8125 20 6 13.1930 -3.0016 -7.0993 21 1 13.1579 -3.4198 -6.1042 22 6 14.4058 -2.6075 -7.6434 23 7 14.4486 -2.0984 -8.8557 24 14 15.9793 -2.7995 -6.6550 25 1 16.5741 -4.1331 -6.9255 26 1 16.9425 -1.7393 -7.0468 27 1 15.6722 -2.6789 -5.2072 28 6 10.9147 -3.7106 -5.9055 29 6 9.7291 -4.0214 -5.2692 30 1 -0.3634 -0.9260 0.4456 31 1 -0.3634 0.8489 0.5793 32 1 -0.3634 0.0773 -1.0247 33 1 1.6111 -1.8583 1.2686 34 1 3.1716 -0.8756 1.2683 35 1 4.3021 -0.5112 -0.7295 36 1 3.3890 0.0669 -2.1438 37 1 3.4888 -2.7538 -2.2415 38 1 7.2845 -2.1524 -4.4444 39 1 7.3915 -4.9734 -4.5307 40 1 6.4772 -4.4028 -5.9473 41 1 7.5528 -3.0859 -7.6735 42 1 9.6595 -2.5185 -8.8123 43 1 15.2972 -1.8231 -9.2365 44 1 11.8573 -3.8889 -5.4096 45 1 9.7449 -4.4427 -4.2748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325692689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:26 Heat of formation + Delta-G solvation = -76.419368 kcal Electronic energy + Delta-G solvation = -26237.630493 eV Core-core repulsion = 22220.600356 eV Total energy + Delta-G solvation = -4017.030137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74285 -40.84042 -39.82185 -38.88129 -38.50015 -36.20062 -35.24047 -34.28093 -31.86558 -31.54026 -30.24313 -28.26520 -27.61508 -26.57528 -24.31596 -23.66460 -22.21583 -22.18926 -21.78816 -21.06494 -19.91168 -19.61518 -18.83050 -17.98862 -17.19828 -16.89319 -16.69219 -16.48498 -16.30711 -15.91780 -15.69830 -15.55327 -15.37539 -15.05768 -15.03394 -14.61857 -14.41203 -14.26658 -14.03312 -13.91434 -13.66271 -13.30971 -13.08791 -13.06457 -12.85596 -12.55342 -12.38796 -12.37606 -12.26668 -12.25408 -12.12711 -11.21465 -11.07600 -11.03669 -10.82831 -10.63308 -10.30703 -10.21405 -9.82141 -9.03481 -8.48987 -6.17418 0.32344 0.48047 0.57115 1.35494 1.36457 1.45904 1.52754 2.12224 2.16679 2.54981 2.79355 2.90786 3.16432 3.45329 3.47977 3.58996 3.82139 3.87881 3.99880 4.01258 4.16058 4.20340 4.42847 4.45673 4.53138 4.55036 4.66071 4.67534 4.78829 4.89314 4.95248 4.97675 5.02426 5.08182 5.12984 5.14560 5.22705 5.25197 5.28651 5.44578 5.50221 5.68079 5.71879 5.90901 6.00608 6.14959 6.33361 6.69693 6.91840 6.95733 7.74470 8.73727 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.001682 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.477395 B =16646.362820 C =17174.079759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.142 4.142 3 H 0.108 0.892 4 C -0.170 4.170 5 C -0.171 4.171 6 H 0.121 0.879 7 C 0.148 3.852 8 N -0.685 5.685 9 C 0.507 3.493 10 O -0.546 6.546 11 C 0.508 3.492 12 O -0.542 6.542 13 N -0.687 5.687 14 C 0.182 3.818 15 C -0.189 4.189 16 C -0.042 4.042 17 C -0.206 4.206 18 C 0.123 3.877 19 O -0.229 6.229 20 C -0.415 4.415 21 H 0.104 0.896 22 C -0.021 4.021 23 N -0.918 5.918 24 Si 1.018 2.982 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.253 1.253 28 C -0.245 4.245 29 C -0.044 4.044 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.421 0.579 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.150 0.850 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.761 0.210 18.282 31.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 H 0.126 0.874 4 C -0.207 4.207 5 C -0.189 4.189 6 H 0.139 0.861 7 C 0.026 3.974 8 N -0.338 5.338 9 C 0.287 3.713 10 O -0.424 6.424 11 C 0.289 3.711 12 O -0.420 6.420 13 N -0.339 5.339 14 C 0.060 3.940 15 C -0.190 4.190 16 C -0.061 4.061 17 C -0.225 4.225 18 C 0.072 3.928 19 O -0.135 6.135 20 C -0.491 4.491 21 H 0.121 0.879 22 C -0.219 4.219 23 N -0.556 5.556 24 Si 0.837 3.163 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.177 1.177 28 C -0.264 4.264 29 C -0.063 4.063 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.259 0.741 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.168 0.832 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.573 0.362 17.914 31.226 hybrid contribution 1.235 0.107 -0.142 1.248 sum -24.339 0.469 17.772 30.140 Atomic orbital electron populations 1.21398 0.91772 1.02631 1.02318 1.22480 0.96074 0.94541 1.03013 0.87421 1.23347 1.03019 1.01552 0.92814 1.22501 0.97509 1.04079 0.94855 0.86100 1.21083 0.94631 0.87307 0.94395 1.45739 1.23069 1.18240 1.46782 1.20160 0.82372 0.87867 0.80854 1.90790 1.56099 1.31992 1.63515 1.20104 0.82141 0.88054 0.80836 1.90749 1.56055 1.31534 1.63701 1.46113 1.23118 1.17935 1.46723 1.20145 0.92260 0.87129 0.94459 1.19490 0.94044 1.09338 0.96109 1.20925 0.96828 0.94440 0.93887 1.20465 0.90304 1.09790 1.01958 1.20020 0.87472 0.92993 0.92318 1.83947 1.12631 1.76776 1.40149 1.21843 0.82904 1.43643 1.00695 0.87886 1.26580 1.02322 0.95385 0.97583 1.70177 1.28047 1.40862 1.16487 0.84593 0.74914 0.78712 0.78056 1.18759 1.19675 1.17665 1.21255 0.99882 1.09016 0.96288 1.20978 0.90648 0.95526 0.99126 0.92025 0.91405 0.91950 0.87621 0.88556 0.91115 0.90848 0.74119 0.74818 0.89604 0.89339 0.83217 0.86626 0.91789 0.86144 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.19 71.98 0.73 -0.07 16 2 C -0.14 -1.17 6.13 -10.79 -0.07 -1.23 16 3 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 4 C -0.17 -1.39 9.82 30.60 0.30 -1.09 16 5 C -0.17 -1.56 5.57 -10.79 -0.06 -1.62 16 6 H 0.12 0.93 8.04 -2.39 -0.02 0.91 16 7 C 0.15 1.99 5.96 86.38 0.51 2.50 16 8 N -0.68 -10.98 5.55 -464.42 -2.58 -13.56 16 9 C 0.51 11.24 7.89 87.27 0.69 11.92 16 10 O -0.55 -15.10 16.48 -3.23 -0.05 -15.15 16 11 C 0.51 11.76 7.89 87.27 0.69 12.45 16 12 O -0.54 -13.92 16.48 -3.25 -0.05 -13.97 16 13 N -0.69 -15.65 5.54 -468.14 -2.59 -18.24 16 14 C 0.18 4.09 5.80 85.63 0.50 4.59 16 15 C -0.19 -5.35 5.25 -19.84 -0.10 -5.46 16 16 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 17 C -0.21 -8.33 9.99 22.39 0.22 -8.11 16 18 C 0.12 5.92 6.65 22.58 0.15 6.07 16 19 O -0.23 -13.52 9.76 -22.76 -0.22 -13.75 16 20 C -0.41 -23.74 9.49 67.92 0.64 -23.10 16 21 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 22 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 23 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 24 Si 1.02 42.28 29.55 68.60 2.03 44.31 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 28 C -0.25 -10.17 9.17 22.39 0.21 -9.96 16 29 C -0.04 -1.41 9.69 22.25 0.22 -1.20 16 30 H 0.06 0.35 7.90 -2.39 -0.02 0.34 16 31 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 0.70 8.05 -2.39 -0.02 0.68 16 34 H 0.10 0.82 8.03 -2.39 -0.02 0.80 16 35 H 0.07 1.04 7.88 -2.39 -0.02 1.02 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.42 5.52 7.87 -92.71 -0.73 4.79 16 38 H 0.42 9.79 7.94 -92.71 -0.74 9.05 16 39 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 45 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -71.97 390.77 1.71 -70.27 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.43 Total: 31.64 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 5.31 Total: -16.11 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.88 Total: -87.24 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.33 Total: -42.87 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -71.97 1.71 -70.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325692689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.154 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds