Wall clock time and date at job start Tue Mar 31 2020 17:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 115.54815 * 2 1 4 4 C 1.52995 * 117.50182 * 214.32513 * 2 1 3 5 5 C 1.53002 * 117.49895 * 145.66459 * 2 1 3 6 6 H 1.09004 * 117.49521 * 0.02562 * 5 2 1 7 7 C 1.52996 * 117.49768 * 215.00608 * 5 2 1 8 8 N 1.46505 * 109.46938 * 174.99994 * 7 5 2 9 9 C 1.34773 * 119.99748 * 179.97438 * 8 7 5 10 10 O 1.21345 * 120.00639 * 0.02562 * 9 8 7 11 11 C 1.49458 * 119.99568 * 180.02562 * 9 8 7 12 12 O 1.21345 * 120.00241 * 0.02562 * 11 9 8 13 13 N 1.34773 * 119.99568 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99748 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47068 * 180.02562 * 14 13 11 16 16 C 1.38303 * 119.93292 * 269.72760 * 15 14 13 17 17 C 1.38097 * 120.06794 * 179.72618 * 16 15 14 18 18 C 1.38881 * 119.93137 * 0.57018 * 17 16 15 19 19 O 1.35758 * 120.06894 * 179.68348 * 18 17 16 20 20 C 1.34827 * 116.99654 * 174.48799 * 19 18 17 21 21 H 1.07999 * 120.00518 * 5.05642 * 20 19 18 22 22 C 1.38656 * 119.99448 * 185.05515 * 20 19 18 23 23 N 1.31563 * 119.99521 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00145 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47128 * 90.00060 * 24 22 20 26 26 H 1.48505 * 109.47115 * 209.99859 * 24 22 20 27 27 H 1.48496 * 109.47424 * 329.99729 * 24 22 20 28 28 C 1.38876 * 119.86109 * 359.70472 * 18 17 16 29 29 C 1.38095 * 119.93078 * 0.02562 * 28 18 17 30 30 H 1.08993 * 109.47565 * 274.41868 * 1 2 3 31 31 H 1.09007 * 109.47043 * 154.41643 * 1 2 3 32 32 H 1.09008 * 109.47087 * 34.42370 * 1 2 3 33 33 H 1.09003 * 117.49808 * 0.02562 * 4 2 1 34 34 H 1.09006 * 117.49756 * 145.01941 * 4 2 1 35 35 H 1.08995 * 109.47278 * 295.00216 * 7 5 2 36 36 H 1.09005 * 109.47278 * 55.00353 * 7 5 2 37 37 H 0.97000 * 120.00012 * 0.02562 * 8 7 5 38 38 H 0.96999 * 120.00426 * 0.02562 * 13 11 9 39 39 H 1.08995 * 109.47317 * 300.00366 * 14 13 11 40 40 H 1.09005 * 109.46843 * 60.00261 * 14 13 11 41 41 H 1.07995 * 119.96256 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.03575 * 180.27140 * 17 16 15 43 43 H 0.97005 * 119.99553 * 179.97438 * 23 22 20 44 44 H 1.08007 * 120.03519 * 179.97438 * 28 18 17 45 45 H 1.08000 * 119.96599 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7652 5 6 2.2364 -1.1207 0.7655 6 1 1.6111 -1.8582 1.2687 7 6 3.5486 -0.7751 1.4723 8 7 4.0081 -1.9336 2.2425 9 6 5.1521 -1.8607 2.9513 10 8 5.8013 -0.8355 2.9520 11 6 5.6211 -3.0427 3.7366 12 8 4.9723 -4.0680 3.7356 13 7 6.7654 -2.9699 4.4450 14 6 7.2249 -4.1284 5.2152 15 6 8.5177 -3.7882 5.9109 16 6 9.7248 -4.0270 5.2794 17 6 10.9110 -3.7112 5.9121 18 6 10.8913 -3.1642 7.1885 19 8 12.0560 -2.8587 7.8156 20 6 11.9642 -2.2266 9.0030 21 1 10.9965 -2.0590 9.4523 22 6 13.1124 -1.7917 9.6473 23 7 13.0228 -1.1744 10.8057 24 14 14.7861 -2.0809 8.8699 25 1 15.1349 -0.9273 8.0023 26 1 15.8091 -2.2251 9.9367 27 1 14.7450 -3.3202 8.0528 28 6 9.6778 -2.9310 7.8222 29 6 8.4948 -3.2438 7.1821 30 1 -0.3634 0.0792 1.0245 31 1 -0.3633 -0.9270 -0.4438 32 1 -0.3634 0.8478 -0.5810 33 1 1.6113 -1.8579 -1.2691 34 1 3.1716 -0.8747 -1.2685 35 1 4.3020 -0.5099 0.7306 36 1 3.3882 0.0677 2.1446 37 1 3.4894 -2.7532 2.2417 38 1 7.2843 -2.1504 4.4455 39 1 6.4720 -4.3930 5.9575 40 1 7.3845 -4.9715 4.5430 41 1 9.7395 -4.4572 4.2890 42 1 11.8531 -3.8938 5.4167 43 1 13.8261 -0.8705 11.2566 44 1 9.6592 -2.5061 8.8150 45 1 7.5508 -3.0622 7.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325692691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:33 Heat of formation + Delta-G solvation = -53.265828 kcal Electronic energy + Delta-G solvation = -26261.383257 eV Core-core repulsion = 22245.357133 eV Total energy + Delta-G solvation = -4016.026124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -40.77507 -39.42299 -38.93189 -38.21347 -37.08717 -35.22761 -34.26459 -32.48748 -30.46730 -30.26351 -29.73416 -27.51557 -26.29608 -24.94975 -23.29146 -22.20848 -21.70981 -21.23521 -20.68545 -20.24936 -18.73664 -17.99504 -17.37866 -17.04572 -16.30777 -16.10538 -15.65847 -15.21215 -15.03232 -14.84822 -14.58398 -14.26546 -14.11086 -13.90729 -13.85163 -13.63678 -13.43083 -13.33187 -12.86955 -12.74261 -12.70639 -12.29015 -12.06296 -11.96542 -11.88485 -11.83714 -11.48139 -11.02121 -10.86137 -10.79230 -10.62801 -10.49316 -10.23438 -9.75315 -9.51541 -9.49940 -9.23253 -8.95994 -8.39866 -7.50912 -6.50760 -4.17656 1.29340 1.81016 2.01440 2.34670 3.08136 3.16264 3.17926 3.20918 3.34570 3.58461 4.04913 4.16277 4.27855 4.28364 4.40846 4.48796 4.67861 4.72756 4.80894 5.01308 5.02373 5.04926 5.24588 5.26562 5.27667 5.30684 5.32208 5.52069 5.53894 5.61419 5.67088 5.71136 5.77682 5.93027 6.01294 6.17888 6.21623 6.43220 6.65455 6.76929 6.88747 7.08950 7.16183 7.26946 7.47954 7.60176 7.69620 7.88251 7.93096 8.83637 9.43827 10.56256 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.001680 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.421116 B =16663.302750 C =17026.732850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.108 0.892 4 C -0.171 4.171 5 C -0.170 4.170 6 H 0.113 0.887 7 C 0.149 3.851 8 N -0.701 5.701 9 C 0.506 3.494 10 O -0.517 6.517 11 C 0.503 3.497 12 O -0.530 6.530 13 N -0.688 5.688 14 C 0.176 3.824 15 C -0.212 4.212 16 C -0.054 4.054 17 C -0.195 4.195 18 C 0.168 3.832 19 O -0.211 6.211 20 C -0.392 4.392 21 H 0.108 0.892 22 C 0.065 3.935 23 N -0.874 5.874 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.259 1.259 28 C -0.224 4.224 29 C -0.050 4.050 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.415 0.585 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.281 0.719 44 H 0.135 0.865 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 -0.934 -19.921 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 H 0.126 0.874 4 C -0.208 4.208 5 C -0.189 4.189 6 H 0.131 0.869 7 C 0.026 3.974 8 N -0.355 5.355 9 C 0.287 3.713 10 O -0.392 6.392 11 C 0.283 3.717 12 O -0.407 6.407 13 N -0.340 5.340 14 C 0.054 3.946 15 C -0.213 4.213 16 C -0.073 4.073 17 C -0.214 4.214 18 C 0.115 3.885 19 O -0.115 6.115 20 C -0.467 4.467 21 H 0.125 0.875 22 C -0.139 4.139 23 N -0.511 5.511 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.183 1.183 28 C -0.243 4.243 29 C -0.068 4.068 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.252 0.748 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.091 0.909 44 H 0.153 0.847 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.604 -0.852 -19.760 28.561 hybrid contribution 0.705 0.033 -0.014 0.705 sum -19.899 -0.820 -19.774 28.065 Atomic orbital electron populations 1.21386 0.92447 1.02168 1.02154 1.22401 0.95542 0.94653 1.03542 0.87397 1.23298 1.02889 1.01387 0.93253 1.22577 0.98349 1.03364 0.94566 0.86891 1.21003 0.93754 0.88003 0.94669 1.45728 1.24166 1.17495 1.48114 1.20290 0.81826 0.88566 0.80660 1.90793 1.55030 1.31101 1.62276 1.20047 0.82469 0.88030 0.81148 1.90748 1.55554 1.31072 1.63309 1.46216 1.22961 1.18237 1.46630 1.20163 0.93607 0.86875 0.93916 1.19211 0.93229 1.11973 0.96899 1.20535 0.91202 0.97308 0.98218 1.20210 0.98363 1.08624 0.94209 1.19194 0.85931 0.92341 0.91045 1.83576 1.27021 1.66940 1.34007 1.20796 0.97242 1.35245 0.93454 0.87455 1.24494 0.99321 0.94940 0.95158 1.69647 1.30853 1.36322 1.14273 0.86169 0.81572 0.80034 0.79080 1.19781 1.20663 1.18316 1.21279 0.91712 1.08714 1.02610 1.20701 0.97318 0.95293 0.93532 0.91970 0.92422 0.91888 0.88438 0.88424 0.90719 0.90451 0.75043 0.74843 0.90759 0.90763 0.86680 0.86275 0.90883 0.84704 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.19 37.16 0.38 -0.14 16 2 C -0.14 -0.70 6.12 -90.62 -0.55 -1.26 16 3 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.17 -0.85 9.83 -26.70 -0.26 -1.11 16 5 C -0.17 -0.93 5.57 -90.58 -0.50 -1.44 16 6 H 0.11 0.57 8.04 -51.93 -0.42 0.15 16 7 C 0.15 1.10 5.96 -4.04 -0.02 1.08 16 8 N -0.70 -6.23 5.55 -60.73 -0.34 -6.56 16 9 C 0.51 6.01 7.89 -11.58 -0.09 5.91 16 10 O -0.52 -7.40 16.48 5.50 0.09 -7.31 16 11 C 0.50 6.39 7.89 -11.58 -0.09 6.30 16 12 O -0.53 -7.50 16.48 5.50 0.09 -7.41 16 13 N -0.69 -8.69 5.54 -61.91 -0.34 -9.04 16 14 C 0.18 2.26 5.80 -5.19 -0.03 2.23 16 15 C -0.21 -3.21 5.25 -104.58 -0.55 -3.76 16 16 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 17 C -0.19 -3.62 9.99 -39.40 -0.39 -4.02 16 18 C 0.17 3.70 6.65 -39.11 -0.26 3.44 16 19 O -0.21 -5.39 8.59 0.03 0.00 -5.39 16 20 C -0.39 -10.73 9.95 30.89 0.31 -10.42 16 21 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 22 C 0.07 1.78 5.49 -17.51 -0.10 1.68 16 23 N -0.87 -24.67 13.96 55.48 0.77 -23.90 16 24 Si 0.91 21.15 28.62 -169.99 -4.86 16.28 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 28 C -0.22 -4.57 9.17 -39.40 -0.36 -4.93 16 29 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 32 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 33 H 0.10 0.42 8.05 -51.93 -0.42 0.01 16 34 H 0.10 0.48 8.03 -51.93 -0.42 0.06 16 35 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.41 3.15 7.87 -40.82 -0.32 2.83 16 38 H 0.41 5.29 7.94 -40.82 -0.32 4.97 16 39 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.14 2.91 5.64 -52.48 -0.30 2.62 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -30.34 389.65 -8.25 -38.59 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.23 Total: 7.73 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.30 Total: -8.87 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.09 Total: -39.50 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.18 Total: -20.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.86 Total: 16.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.34 -8.25 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325692691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.674 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds