Wall clock time and date at job start Tue Mar 31 2020 17:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 115.54815 * 2 1 4 4 C 1.52995 * 117.50182 * 214.32513 * 2 1 3 5 5 C 1.53002 * 117.49895 * 145.66459 * 2 1 3 6 6 H 1.09004 * 117.49521 * 0.02562 * 5 2 1 7 7 C 1.52996 * 117.49768 * 215.00608 * 5 2 1 8 8 N 1.46505 * 109.46938 * 174.99994 * 7 5 2 9 9 C 1.34773 * 119.99748 * 179.97438 * 8 7 5 10 10 O 1.21345 * 120.00639 * 0.02562 * 9 8 7 11 11 C 1.49458 * 119.99568 * 180.02562 * 9 8 7 12 12 O 1.21345 * 120.00241 * 0.02562 * 11 9 8 13 13 N 1.34773 * 119.99568 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99748 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47068 * 180.02562 * 14 13 11 16 16 C 1.38303 * 119.93292 * 269.72760 * 15 14 13 17 17 C 1.38097 * 120.06794 * 179.72618 * 16 15 14 18 18 C 1.38881 * 119.93137 * 0.57018 * 17 16 15 19 19 O 1.35758 * 120.06894 * 179.68348 * 18 17 16 20 20 C 1.34827 * 116.99654 * 174.48799 * 19 18 17 21 21 H 1.07999 * 120.00518 * 5.05642 * 20 19 18 22 22 C 1.38656 * 119.99448 * 185.05515 * 20 19 18 23 23 N 1.31563 * 119.99521 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00145 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47128 * 90.00060 * 24 22 20 26 26 H 1.48505 * 109.47115 * 209.99859 * 24 22 20 27 27 H 1.48496 * 109.47424 * 329.99729 * 24 22 20 28 28 C 1.38876 * 119.86109 * 359.70472 * 18 17 16 29 29 C 1.38095 * 119.93078 * 0.02562 * 28 18 17 30 30 H 1.08993 * 109.47565 * 274.41868 * 1 2 3 31 31 H 1.09007 * 109.47043 * 154.41643 * 1 2 3 32 32 H 1.09008 * 109.47087 * 34.42370 * 1 2 3 33 33 H 1.09003 * 117.49808 * 0.02562 * 4 2 1 34 34 H 1.09006 * 117.49756 * 145.01941 * 4 2 1 35 35 H 1.08995 * 109.47278 * 295.00216 * 7 5 2 36 36 H 1.09005 * 109.47278 * 55.00353 * 7 5 2 37 37 H 0.97000 * 120.00012 * 0.02562 * 8 7 5 38 38 H 0.96999 * 120.00426 * 0.02562 * 13 11 9 39 39 H 1.08995 * 109.47317 * 300.00366 * 14 13 11 40 40 H 1.09005 * 109.46843 * 60.00261 * 14 13 11 41 41 H 1.07995 * 119.96256 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.03575 * 180.27140 * 17 16 15 43 43 H 0.97005 * 119.99553 * 179.97438 * 23 22 20 44 44 H 1.08007 * 120.03519 * 179.97438 * 28 18 17 45 45 H 1.08000 * 119.96599 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7652 5 6 2.2364 -1.1207 0.7655 6 1 1.6111 -1.8582 1.2687 7 6 3.5486 -0.7751 1.4723 8 7 4.0081 -1.9336 2.2425 9 6 5.1521 -1.8607 2.9513 10 8 5.8013 -0.8355 2.9520 11 6 5.6211 -3.0427 3.7366 12 8 4.9723 -4.0680 3.7356 13 7 6.7654 -2.9699 4.4450 14 6 7.2249 -4.1284 5.2152 15 6 8.5177 -3.7882 5.9109 16 6 9.7248 -4.0270 5.2794 17 6 10.9110 -3.7112 5.9121 18 6 10.8913 -3.1642 7.1885 19 8 12.0560 -2.8587 7.8156 20 6 11.9642 -2.2266 9.0030 21 1 10.9965 -2.0590 9.4523 22 6 13.1124 -1.7917 9.6473 23 7 13.0228 -1.1744 10.8057 24 14 14.7861 -2.0809 8.8699 25 1 15.1349 -0.9273 8.0023 26 1 15.8091 -2.2251 9.9367 27 1 14.7450 -3.3202 8.0528 28 6 9.6778 -2.9310 7.8222 29 6 8.4948 -3.2438 7.1821 30 1 -0.3634 0.0792 1.0245 31 1 -0.3633 -0.9270 -0.4438 32 1 -0.3634 0.8478 -0.5810 33 1 1.6113 -1.8579 -1.2691 34 1 3.1716 -0.8747 -1.2685 35 1 4.3020 -0.5099 0.7306 36 1 3.3882 0.0677 2.1446 37 1 3.4894 -2.7532 2.2417 38 1 7.2843 -2.1504 4.4455 39 1 6.4720 -4.3930 5.9575 40 1 7.3845 -4.9715 4.5430 41 1 9.7395 -4.4572 4.2890 42 1 11.8531 -3.8938 5.4167 43 1 13.8261 -0.8705 11.2566 44 1 9.6592 -2.5061 8.8150 45 1 7.5508 -3.0622 7.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325692691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:30 Heat of formation + Delta-G solvation = -73.337134 kcal Electronic energy + Delta-G solvation = -26262.253615 eV Core-core repulsion = 22245.357133 eV Total energy + Delta-G solvation = -4016.896481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.75054 -40.94872 -39.84150 -38.88679 -38.59750 -36.21590 -35.24673 -34.44877 -31.91943 -31.65586 -30.24960 -28.34880 -27.64932 -26.43779 -24.30250 -23.73112 -22.21439 -22.12349 -21.79032 -21.06665 -19.89529 -19.60489 -19.09852 -17.99419 -17.19875 -16.93529 -16.76040 -16.63547 -16.14427 -15.92911 -15.71375 -15.54759 -15.47673 -15.12762 -14.92656 -14.66321 -14.43865 -14.29689 -14.08653 -14.02962 -13.91549 -13.38360 -13.14490 -13.08432 -12.86835 -12.58686 -12.48461 -12.37810 -12.36454 -12.25451 -11.94929 -11.31933 -11.07553 -11.04520 -10.92095 -10.64444 -10.31386 -10.21789 -9.85012 -9.12324 -8.51693 -6.24846 0.32037 0.42465 0.53673 1.31859 1.33295 1.39369 1.51792 2.11856 2.26932 2.53246 2.76442 2.87259 3.03958 3.14242 3.45260 3.58927 3.78696 3.87874 3.99059 3.99744 4.12307 4.20175 4.40637 4.45561 4.52043 4.53061 4.65977 4.66381 4.78150 4.89163 4.93556 4.95176 4.97441 5.08098 5.13372 5.20430 5.22566 5.28573 5.31684 5.44363 5.51644 5.67713 5.77065 5.86730 5.90600 6.17721 6.32731 6.69287 6.82333 6.91455 7.54833 8.59507 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.001680 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.421116 B =16663.302750 C =17026.732850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.108 0.892 4 C -0.169 4.169 5 C -0.171 4.171 6 H 0.121 0.879 7 C 0.149 3.851 8 N -0.685 5.685 9 C 0.507 3.493 10 O -0.546 6.546 11 C 0.509 3.491 12 O -0.542 6.542 13 N -0.687 5.687 14 C 0.180 3.820 15 C -0.180 4.180 16 C -0.044 4.044 17 C -0.193 4.193 18 C 0.130 3.870 19 O -0.241 6.241 20 C -0.401 4.401 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.921 5.921 24 Si 0.970 3.030 25 H -0.266 1.266 26 H -0.268 1.268 27 H -0.261 1.261 28 C -0.240 4.240 29 C -0.049 4.049 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.421 0.579 38 H 0.416 0.584 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.157 0.843 42 H 0.132 0.868 43 H 0.285 0.715 44 H 0.110 0.890 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.729 -2.259 -23.057 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.126 0.874 4 C -0.206 4.206 5 C -0.190 4.190 6 H 0.139 0.861 7 C 0.026 3.974 8 N -0.338 5.338 9 C 0.287 3.713 10 O -0.424 6.424 11 C 0.289 3.711 12 O -0.420 6.420 13 N -0.339 5.339 14 C 0.058 3.942 15 C -0.181 4.181 16 C -0.062 4.062 17 C -0.212 4.212 18 C 0.080 3.920 19 O -0.148 6.148 20 C -0.477 4.477 21 H 0.100 0.900 22 C -0.187 4.187 23 N -0.561 5.561 24 Si 0.793 3.207 25 H -0.191 1.191 26 H -0.193 1.193 27 H -0.186 1.186 28 C -0.259 4.259 29 C -0.067 4.067 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.259 0.741 38 H 0.252 0.748 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.174 0.826 42 H 0.150 0.850 43 H 0.095 0.905 44 H 0.128 0.872 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.404 -2.205 -22.940 32.141 hybrid contribution 0.849 0.340 0.711 1.158 sum -21.555 -1.866 -22.229 31.020 Atomic orbital electron populations 1.21398 0.91814 1.02636 1.02289 1.22479 0.96058 0.94570 1.03064 0.87435 1.23358 1.03021 1.01498 0.92746 1.22510 0.97520 1.04078 0.94877 0.86146 1.21081 0.94651 0.87285 0.94388 1.45740 1.23043 1.18216 1.46836 1.20165 0.82375 0.87874 0.80858 1.90790 1.56117 1.31927 1.63557 1.20096 0.82123 0.88007 0.80872 1.90750 1.55880 1.31562 1.63801 1.46089 1.23108 1.18114 1.46604 1.20172 0.92217 0.87370 0.94432 1.19538 0.94588 1.08279 0.95726 1.20991 0.89947 0.95747 0.99510 1.20533 1.00330 1.07532 0.92819 1.19769 0.85641 0.93966 0.92626 1.83524 1.28601 1.69106 1.33618 1.20717 0.96582 1.35857 0.94562 0.89973 1.25288 1.02836 0.94942 0.95683 1.69733 1.31921 1.38591 1.15842 0.85218 0.77398 0.79714 0.78408 1.19142 1.19260 1.18563 1.21278 0.92952 1.09604 1.02075 1.20956 0.96895 0.94635 0.94258 0.92009 0.92008 0.91408 0.87606 0.88483 0.91012 0.90946 0.74121 0.74778 0.89854 0.88937 0.82562 0.85024 0.90532 0.87243 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.19 71.98 0.73 -0.08 16 2 C -0.14 -1.16 6.12 -10.80 -0.07 -1.22 16 3 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.17 -1.33 9.83 30.62 0.30 -1.03 16 5 C -0.17 -1.54 5.57 -10.77 -0.06 -1.60 16 6 H 0.12 0.92 8.04 -2.39 -0.02 0.90 16 7 C 0.15 1.96 5.96 86.38 0.51 2.47 16 8 N -0.69 -10.78 5.55 -464.41 -2.58 -13.36 16 9 C 0.51 11.02 7.89 87.27 0.69 11.71 16 10 O -0.55 -14.86 16.48 -3.23 -0.05 -14.92 16 11 C 0.51 11.48 7.89 87.27 0.69 12.17 16 12 O -0.54 -13.63 16.48 -3.23 -0.05 -13.68 16 13 N -0.69 -15.09 5.54 -468.14 -2.59 -17.69 16 14 C 0.18 3.86 5.80 85.63 0.50 4.36 16 15 C -0.18 -4.85 5.25 -19.83 -0.10 -4.95 16 16 C -0.04 -1.20 9.69 22.25 0.22 -0.99 16 17 C -0.19 -6.86 9.99 22.39 0.22 -6.64 16 18 C 0.13 5.81 6.65 22.58 0.15 5.96 16 19 O -0.24 -12.79 8.59 -22.80 -0.20 -12.99 16 20 C -0.40 -23.24 9.95 67.92 0.68 -22.56 16 21 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 22 C 0.01 0.65 5.49 84.83 0.47 1.11 16 23 N -0.92 -54.45 13.96 21.61 0.30 -54.15 16 24 Si 0.97 44.80 28.62 68.60 1.96 46.77 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 28 C -0.24 -10.04 9.17 22.39 0.21 -9.84 16 29 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.35 7.90 -2.38 -0.02 0.33 16 32 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.11 0.67 8.05 -2.39 -0.02 0.65 16 34 H 0.10 0.78 8.03 -2.38 -0.02 0.76 16 35 H 0.07 1.02 7.88 -2.39 -0.02 1.00 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.42 5.40 7.87 -92.71 -0.73 4.67 16 38 H 0.42 9.42 7.94 -92.71 -0.74 8.68 16 39 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 40 H 0.09 1.77 8.08 -2.38 -0.02 1.75 16 41 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.29 15.47 8.31 -92.70 -0.77 14.70 16 44 H 0.11 5.11 5.64 -2.91 -0.02 5.09 16 45 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -68.57 389.65 1.71 -66.86 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.43 Total: 25.61 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 5.34 Total: -12.47 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -4.87 Total: -85.19 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.30 Total: -41.58 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.96 Total: 46.77 kcal Total: -68.57 1.71 -66.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325692691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.476 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds