Wall clock time and date at job start Tue Mar 31 2020 18:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46898 * 2 1 4 4 N 1.46495 * 109.47489 * 239.99258 * 2 1 3 5 5 C 1.34774 * 119.99998 * 84.99948 * 4 2 1 6 6 O 1.21353 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.49450 * 120.00149 * 180.02562 * 5 4 2 8 8 O 1.21349 * 120.00143 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99780 * 180.02562 * 7 5 4 10 10 C 1.47016 * 125.65327 * 359.95847 * 9 7 5 11 11 C 1.54320 * 107.27403 * 181.09221 * 10 9 7 12 12 C 1.55158 * 102.94128 * 22.19567 * 11 10 9 13 13 O 1.42903 * 111.00510 * 82.57155 * 12 11 10 14 14 C 1.50697 * 111.03748 * 206.40572 * 12 11 10 15 15 H 1.08001 * 120.00221 * 117.68052 * 14 12 11 16 16 C 1.37875 * 120.00399 * 297.68120 * 14 12 11 17 17 N 1.31515 * 120.00351 * 184.89487 * 16 14 12 18 18 Si 1.86808 * 119.99660 * 4.89357 * 16 14 12 19 19 H 1.48501 * 109.47151 * 84.75876 * 18 16 14 20 20 H 1.48501 * 109.46747 * 204.75910 * 18 16 14 21 21 H 1.48499 * 109.47163 * 324.75722 * 18 16 14 22 22 C 1.47431 * 125.64496 * 180.02562 * 9 7 5 23 23 C 1.50700 * 109.46689 * 119.99050 * 2 1 3 24 24 C 1.38242 * 119.99585 * 79.73110 * 23 2 1 25 25 C 1.38241 * 119.99577 * 179.76653 * 24 23 2 26 26 C 1.38228 * 120.00176 * 0.50034 * 25 24 23 27 27 C 1.38236 * 120.00087 * 359.75453 * 26 25 24 28 28 C 1.38232 * 120.00619 * 260.00065 * 23 2 1 29 29 H 1.08994 * 109.47297 * 300.00972 * 1 2 3 30 30 H 1.09001 * 109.46852 * 60.00541 * 1 2 3 31 31 H 1.08995 * 109.47477 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00008 * 265.00764 * 4 2 1 33 33 H 1.09000 * 109.88684 * 300.51334 * 10 9 7 34 34 H 1.09001 * 109.88149 * 61.67644 * 10 9 7 35 35 H 1.09003 * 110.72714 * 263.83263 * 11 10 9 36 36 H 1.09003 * 110.72155 * 140.55580 * 11 10 9 37 37 H 0.96698 * 114.00062 * 186.35118 * 13 12 11 38 38 H 0.96998 * 119.99767 * 179.97438 * 17 16 14 39 39 H 1.08996 * 110.36542 * 36.99320 * 22 9 7 40 40 H 1.09001 * 110.36629 * 274.67241 * 22 9 7 41 41 H 1.08002 * 120.00024 * 359.97438 * 24 23 2 42 42 H 1.08003 * 119.99404 * 180.22959 * 25 24 23 43 43 H 1.08002 * 120.00044 * 179.72289 * 26 25 24 44 44 H 1.07996 * 120.00167 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99975 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8590 1.1590 -2.4116 7 6 2.6449 -0.7233 -3.5773 8 8 2.9327 -1.9009 -3.5230 9 7 2.7741 -0.0509 -4.7382 10 6 2.4622 1.3709 -4.9442 11 6 2.7366 1.6898 -6.4290 12 6 2.6476 0.2965 -7.1058 13 8 1.2894 -0.0554 -7.3770 14 6 3.4755 0.2525 -8.3643 15 1 4.3078 -0.4316 -8.4395 16 6 3.1704 1.0856 -9.4197 17 7 3.8306 0.9809 -10.5523 18 14 1.8192 2.3631 -9.2408 19 1 2.3763 3.5883 -8.6133 20 1 1.2737 2.6974 -10.5809 21 1 0.7336 1.8190 -8.3861 22 6 3.2504 -0.6198 -6.0122 23 6 2.0322 -0.7102 1.2306 24 6 2.0613 -2.0918 1.2677 25 6 2.5266 -2.7433 2.3948 26 6 2.9529 -2.0134 3.4884 27 6 2.9189 -0.6319 3.4533 28 6 2.4586 0.0196 2.3244 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6319 -1.1523 33 1 1.4136 1.5578 -4.7126 34 1 3.0996 1.9861 -4.3090 35 1 3.7318 2.1165 -6.5543 36 1 1.9752 2.3609 -6.8265 37 1 1.1754 -0.9561 -7.7101 38 1 3.6156 1.5667 -11.2949 39 1 2.8880 -1.6410 -6.1306 40 1 4.3393 -0.5955 -6.0550 41 1 1.7238 -2.6622 0.4150 42 1 2.5528 -3.8227 2.4223 43 1 3.3122 -2.5224 4.3706 44 1 3.2516 -0.0616 4.3080 45 1 2.4314 1.0990 2.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326201916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:39 Heat of formation + Delta-G solvation = -75.230296 kcal Electronic energy + Delta-G solvation = -28380.575522 eV Core-core repulsion = 24363.596947 eV Total energy + Delta-G solvation = -4016.978575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.77999 -39.77518 -38.65188 -37.50759 -35.92315 -34.52016 -32.46256 -31.99991 -31.22662 -30.47145 -29.52459 -28.47993 -26.23379 -24.65565 -23.50909 -22.96375 -22.12729 -20.76500 -20.07829 -19.72102 -18.04032 -17.39451 -16.96934 -16.79637 -16.01216 -15.85469 -15.56042 -15.09394 -14.90610 -14.68660 -14.51311 -14.45031 -13.86668 -13.74341 -13.55037 -13.42711 -13.16707 -12.90530 -12.68800 -12.59674 -12.48637 -12.11754 -11.96505 -11.76689 -11.43860 -11.38313 -11.25977 -11.16797 -11.06588 -10.54971 -10.37242 -10.14152 -9.50636 -9.35118 -9.28464 -9.09447 -9.05805 -8.80892 -8.58439 -8.22060 -6.24743 -4.37272 0.92047 1.02558 1.58504 2.43021 3.29152 3.35668 3.40723 3.41935 3.59524 3.67333 4.17979 4.40080 4.47692 4.49456 4.62443 4.75377 4.93566 4.95505 5.04691 5.11231 5.16738 5.19489 5.35297 5.37038 5.54999 5.58248 5.64274 5.66391 5.71649 5.89876 5.98459 6.00032 6.07573 6.12853 6.14591 6.27899 6.33402 6.46285 6.56935 6.59987 6.64919 7.05046 7.07950 7.42339 7.62170 7.79221 8.15527 8.17460 8.69559 8.86497 9.38349 10.85377 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.002461 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.635145 B =11374.573678 C =11753.507293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.100 0.900 4 N -0.702 5.702 5 C 0.513 3.487 6 O -0.512 6.512 7 C 0.512 3.488 8 O -0.538 6.538 9 N -0.573 5.573 10 C 0.111 3.889 11 C -0.131 4.131 12 C 0.216 3.784 13 O -0.570 6.570 14 C -0.552 4.552 15 H 0.080 0.920 16 C 0.091 3.909 17 N -0.885 5.885 18 Si 0.874 3.126 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.229 1.229 22 C 0.090 3.910 23 C -0.092 4.092 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.107 4.107 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.411 0.589 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.365 0.635 38 H 0.268 0.732 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -3.141 26.128 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 H 0.118 0.882 4 N -0.357 5.357 5 C 0.294 3.706 6 O -0.387 6.387 7 C 0.295 3.705 8 O -0.417 6.417 9 N -0.305 5.305 10 C -0.011 4.011 11 C -0.169 4.169 12 C 0.176 3.824 13 O -0.376 6.376 14 C -0.589 4.589 15 H 0.098 0.902 16 C -0.115 4.115 17 N -0.521 5.521 18 Si 0.702 3.298 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.152 1.152 22 C -0.032 4.032 23 C -0.093 4.093 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.125 4.125 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.212 0.788 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.528 -2.254 26.202 26.685 hybrid contribution -0.299 -0.287 -0.202 0.461 sum -4.827 -2.541 26.000 26.566 Atomic orbital electron populations 1.22178 0.93674 1.02794 1.03081 1.19872 0.94566 0.96799 0.80918 0.88168 1.45907 1.66305 1.14950 1.08539 1.20268 0.78730 0.87024 0.84587 1.90749 1.47980 1.15290 1.84635 1.19577 0.80688 0.86589 0.83669 1.90724 1.51150 1.15204 1.84594 1.48441 1.60682 1.12435 1.08975 1.22219 1.01298 0.80015 0.97614 1.23074 1.02814 0.98805 0.92203 1.20134 0.80927 0.89410 0.91923 1.86508 1.28499 1.35042 1.87578 1.21078 1.16099 1.24450 0.97287 0.90207 1.24923 0.95471 0.96690 0.94395 1.69924 1.40942 1.38149 1.03069 0.87072 0.84336 0.81068 0.77319 1.20800 1.22673 1.15201 1.23242 0.99880 0.98809 0.81229 1.19908 0.99960 0.94023 0.95389 1.20998 0.99736 0.93769 0.98533 1.21164 0.98665 1.00129 0.93355 1.21209 0.99739 0.94263 0.98569 1.21155 0.99628 0.94680 0.98085 1.21014 0.98465 1.00033 0.92994 0.91167 0.91273 0.92025 0.75192 0.90845 0.91167 0.89155 0.90593 0.78819 0.92269 0.90686 0.90109 0.85887 0.85756 0.85981 0.85820 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.46 37.16 0.35 -1.09 16 2 C 0.18 1.81 2.78 -69.08 -0.19 1.62 16 3 H 0.10 1.06 7.44 -51.93 -0.39 0.67 16 4 N -0.70 -8.39 5.02 -55.36 -0.28 -8.66 16 5 C 0.51 7.84 7.82 -11.59 -0.09 7.75 16 6 O -0.51 -8.52 13.79 5.49 0.08 -8.44 16 7 C 0.51 9.08 7.91 -11.59 -0.09 8.99 16 8 O -0.54 -10.21 16.73 5.50 0.09 -10.12 16 9 N -0.57 -10.74 3.33 -171.05 -0.57 -11.31 16 10 C 0.11 2.02 5.49 -3.07 -0.02 2.01 16 11 C -0.13 -2.69 4.73 -24.90 -0.12 -2.80 16 12 C 0.22 4.78 0.69 -89.64 -0.06 4.71 16 13 O -0.57 -12.45 10.61 -35.23 -0.37 -12.82 16 14 C -0.55 -14.38 8.87 -34.44 -0.31 -14.68 16 15 H 0.08 2.24 8.03 -52.49 -0.42 1.82 16 16 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 17 N -0.88 -25.82 13.96 55.43 0.77 -25.05 16 18 Si 0.87 21.02 23.95 -169.99 -4.07 16.95 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.23 -5.42 5.49 56.52 0.31 -5.11 16 22 C 0.09 1.79 6.08 -2.54 -0.02 1.78 16 23 C -0.09 -0.81 4.95 -104.62 -0.52 -1.33 16 24 C -0.11 -0.94 9.05 -39.58 -0.36 -1.30 16 25 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 26 C -0.12 -0.84 10.05 -39.59 -0.40 -1.23 16 27 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 28 C -0.11 -0.85 9.67 -39.58 -0.38 -1.23 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.41 4.57 6.36 -40.82 -0.26 4.31 16 33 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 34 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 35 H 0.09 1.82 8.03 -51.93 -0.42 1.40 16 36 H 0.08 1.60 5.00 -51.93 -0.26 1.34 16 37 H 0.36 6.95 9.11 45.56 0.41 7.36 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 40 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16 41 H 0.12 0.93 6.93 -52.49 -0.36 0.57 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.81 8.04 -52.49 -0.42 0.39 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -31.57 367.37 -7.41 -38.97 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.51 Total: 11.85 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.09 Total: 3.09 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.07 Total: -45.02 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.21 Total: -31.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.07 Total: 16.95 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.57 -7.41 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326201916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.256 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds