Wall clock time and date at job start Tue Mar 31 2020 18:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46898 * 2 1 4 4 N 1.46495 * 109.47489 * 239.99258 * 2 1 3 5 5 C 1.34774 * 119.99998 * 84.99948 * 4 2 1 6 6 O 1.21353 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.49450 * 120.00149 * 180.02562 * 5 4 2 8 8 O 1.21349 * 120.00143 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99780 * 180.02562 * 7 5 4 10 10 C 1.47016 * 125.65327 * 359.95847 * 9 7 5 11 11 C 1.54320 * 107.27403 * 181.09221 * 10 9 7 12 12 C 1.55158 * 102.94128 * 22.19567 * 11 10 9 13 13 O 1.42903 * 111.00510 * 82.57155 * 12 11 10 14 14 C 1.50697 * 111.03748 * 206.40572 * 12 11 10 15 15 H 1.08001 * 120.00221 * 117.68052 * 14 12 11 16 16 C 1.37875 * 120.00399 * 297.68120 * 14 12 11 17 17 N 1.31515 * 120.00351 * 184.89487 * 16 14 12 18 18 Si 1.86808 * 119.99660 * 4.89357 * 16 14 12 19 19 H 1.48501 * 109.47151 * 84.75876 * 18 16 14 20 20 H 1.48501 * 109.46747 * 204.75910 * 18 16 14 21 21 H 1.48499 * 109.47163 * 324.75722 * 18 16 14 22 22 C 1.47431 * 125.64496 * 180.02562 * 9 7 5 23 23 C 1.50700 * 109.46689 * 119.99050 * 2 1 3 24 24 C 1.38242 * 119.99585 * 79.73110 * 23 2 1 25 25 C 1.38241 * 119.99577 * 179.76653 * 24 23 2 26 26 C 1.38228 * 120.00176 * 0.50034 * 25 24 23 27 27 C 1.38236 * 120.00087 * 359.75453 * 26 25 24 28 28 C 1.38232 * 120.00619 * 260.00065 * 23 2 1 29 29 H 1.08994 * 109.47297 * 300.00972 * 1 2 3 30 30 H 1.09001 * 109.46852 * 60.00541 * 1 2 3 31 31 H 1.08995 * 109.47477 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00008 * 265.00764 * 4 2 1 33 33 H 1.09000 * 109.88684 * 300.51334 * 10 9 7 34 34 H 1.09001 * 109.88149 * 61.67644 * 10 9 7 35 35 H 1.09003 * 110.72714 * 263.83263 * 11 10 9 36 36 H 1.09003 * 110.72155 * 140.55580 * 11 10 9 37 37 H 0.96698 * 114.00062 * 186.35118 * 13 12 11 38 38 H 0.96998 * 119.99767 * 179.97438 * 17 16 14 39 39 H 1.08996 * 110.36542 * 36.99320 * 22 9 7 40 40 H 1.09001 * 110.36629 * 274.67241 * 22 9 7 41 41 H 1.08002 * 120.00024 * 359.97438 * 24 23 2 42 42 H 1.08003 * 119.99404 * 180.22959 * 25 24 23 43 43 H 1.08002 * 120.00044 * 179.72289 * 26 25 24 44 44 H 1.07996 * 120.00167 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99975 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8590 1.1590 -2.4116 7 6 2.6449 -0.7233 -3.5773 8 8 2.9327 -1.9009 -3.5230 9 7 2.7741 -0.0509 -4.7382 10 6 2.4622 1.3709 -4.9442 11 6 2.7366 1.6898 -6.4290 12 6 2.6476 0.2965 -7.1058 13 8 1.2894 -0.0554 -7.3770 14 6 3.4755 0.2525 -8.3643 15 1 4.3078 -0.4316 -8.4395 16 6 3.1704 1.0856 -9.4197 17 7 3.8306 0.9809 -10.5523 18 14 1.8192 2.3631 -9.2408 19 1 2.3763 3.5883 -8.6133 20 1 1.2737 2.6974 -10.5809 21 1 0.7336 1.8190 -8.3861 22 6 3.2504 -0.6198 -6.0122 23 6 2.0322 -0.7102 1.2306 24 6 2.0613 -2.0918 1.2677 25 6 2.5266 -2.7433 2.3948 26 6 2.9529 -2.0134 3.4884 27 6 2.9189 -0.6319 3.4533 28 6 2.4586 0.0196 2.3244 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6319 -1.1523 33 1 1.4136 1.5578 -4.7126 34 1 3.0996 1.9861 -4.3090 35 1 3.7318 2.1165 -6.5543 36 1 1.9752 2.3609 -6.8265 37 1 1.1754 -0.9561 -7.7101 38 1 3.6156 1.5667 -11.2949 39 1 2.8880 -1.6410 -6.1306 40 1 4.3393 -0.5955 -6.0550 41 1 1.7238 -2.6622 0.4150 42 1 2.5528 -3.8227 2.4223 43 1 3.3122 -2.5224 4.3706 44 1 3.2516 -0.0616 4.3080 45 1 2.4314 1.0990 2.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326201916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:38 Heat of formation + Delta-G solvation = -98.294831 kcal Electronic energy + Delta-G solvation = -28381.575675 eV Core-core repulsion = 24363.596947 eV Total energy + Delta-G solvation = -4017.978728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00207 -40.71377 -39.82803 -39.01177 -36.92711 -36.07272 -34.51790 -32.84828 -32.12440 -31.78609 -30.24121 -30.07369 -27.89024 -25.87894 -24.56932 -23.78818 -23.31040 -21.76330 -21.47194 -21.07775 -19.53793 -18.96540 -18.10480 -17.74838 -17.37647 -16.99807 -16.86152 -16.53848 -16.17948 -15.94182 -15.69777 -15.35940 -15.07736 -14.90706 -14.73466 -14.54042 -14.28235 -14.25005 -14.06088 -13.88648 -13.42999 -13.37535 -13.15492 -13.12479 -12.86970 -12.65800 -12.58873 -12.36833 -12.22284 -11.99767 -11.89737 -11.80244 -10.98282 -10.81428 -10.69993 -10.46696 -10.41391 -9.84498 -9.76930 -9.70597 -8.36546 -6.51466 0.26724 0.34755 0.47534 1.20143 1.38261 1.46210 1.67641 2.06118 2.38300 2.39913 2.85642 2.99280 3.22377 3.49274 3.52492 3.74922 3.90455 3.96808 4.09331 4.17525 4.22034 4.24934 4.29943 4.36035 4.57238 4.59441 4.62499 4.68721 4.75704 4.83377 4.88236 4.95733 5.01589 5.05888 5.09393 5.17431 5.19904 5.35079 5.48943 5.53419 5.61049 5.61610 5.93838 6.06216 6.07641 6.23918 6.54913 6.59757 6.85450 7.11252 7.29760 8.77086 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.002461 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.635145 B =11374.573678 C =11753.507293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 H 0.095 0.905 4 N -0.686 5.686 5 C 0.518 3.482 6 O -0.526 6.526 7 C 0.511 3.489 8 O -0.553 6.553 9 N -0.579 5.579 10 C 0.122 3.878 11 C -0.133 4.133 12 C 0.215 3.785 13 O -0.574 6.574 14 C -0.547 4.547 15 H 0.046 0.954 16 C 0.042 3.958 17 N -0.932 5.932 18 Si 0.932 3.068 19 H -0.267 1.267 20 H -0.307 1.307 21 H -0.221 1.221 22 C 0.098 3.902 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.116 4.116 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.376 0.624 38 H 0.268 0.732 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -2.765 29.114 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.081 3.919 3 H 0.113 0.887 4 N -0.340 5.340 5 C 0.298 3.702 6 O -0.403 6.403 7 C 0.294 3.706 8 O -0.432 6.432 9 N -0.311 5.311 10 C 0.000 4.000 11 C -0.171 4.171 12 C 0.175 3.825 13 O -0.381 6.381 14 C -0.585 4.585 15 H 0.064 0.936 16 C -0.159 4.159 17 N -0.570 5.570 18 Si 0.758 3.242 19 H -0.193 1.193 20 H -0.236 1.236 21 H -0.143 1.143 22 C -0.025 4.025 23 C -0.105 4.105 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.134 4.134 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.253 0.747 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.224 0.776 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.507 -1.904 29.240 29.815 hybrid contribution 0.062 -0.547 -1.041 1.178 sum -5.445 -2.451 28.199 28.824 Atomic orbital electron populations 1.22138 0.92885 1.03117 1.03089 1.19988 0.95123 0.96422 0.80396 0.88690 1.45931 1.64819 1.15108 1.08155 1.19791 0.79096 0.86745 0.84574 1.90744 1.49111 1.15650 1.84762 1.20063 0.79973 0.86470 0.84065 1.90713 1.51603 1.15958 1.84930 1.48425 1.61162 1.12654 1.08877 1.22135 1.01849 0.79868 0.96121 1.23045 1.02872 0.97536 0.93620 1.19986 0.80490 0.91272 0.90791 1.86460 1.27818 1.36166 1.87675 1.21288 1.15319 1.22936 0.98959 0.93554 1.25670 0.97569 0.98641 0.94063 1.70044 1.43164 1.39693 1.04122 0.86176 0.81923 0.79271 0.76861 1.19306 1.23562 1.14333 1.22961 0.99443 0.98425 0.81623 1.19837 1.01187 0.94264 0.95169 1.21132 1.00236 0.93761 0.99165 1.21427 0.98396 1.01133 0.93221 1.21543 0.98987 0.94465 0.99108 1.21459 0.99067 0.95054 0.98439 1.21229 0.98356 1.00763 0.93047 0.89432 0.92921 0.91548 0.74651 0.90534 0.89511 0.89138 0.90685 0.77554 0.92261 0.90634 0.90650 0.85657 0.84238 0.83915 0.83794 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.46 71.98 0.68 -1.85 16 2 C 0.18 3.36 2.78 44.25 0.12 3.48 16 3 H 0.10 1.87 7.44 -2.39 -0.02 1.85 16 4 N -0.69 -15.40 5.02 -447.44 -2.25 -17.64 16 5 C 0.52 15.06 7.82 87.27 0.68 15.74 16 6 O -0.53 -16.61 13.79 -3.26 -0.04 -16.65 16 7 C 0.51 17.46 7.91 87.27 0.69 18.15 16 8 O -0.55 -20.41 16.73 -3.24 -0.05 -20.46 16 9 N -0.58 -20.95 3.33 -813.43 -2.71 -23.66 16 10 C 0.12 4.23 5.49 86.73 0.48 4.70 16 11 C -0.13 -5.24 4.73 31.78 0.15 -5.09 16 12 C 0.22 9.35 0.69 -10.16 -0.01 9.35 16 13 O -0.57 -24.27 10.61 -148.98 -1.58 -25.85 16 14 C -0.55 -28.91 8.87 25.60 0.23 -28.68 16 15 H 0.05 2.70 8.03 -2.91 -0.02 2.68 16 16 C 0.04 2.29 5.47 84.65 0.46 2.75 16 17 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 18 Si 0.93 43.21 23.95 68.60 1.64 44.85 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 21 H -0.22 -9.86 5.49 99.48 0.55 -9.31 16 22 C 0.10 3.85 6.08 86.85 0.53 4.38 16 23 C -0.10 -1.66 4.95 -19.86 -0.10 -1.75 16 24 C -0.12 -1.88 9.05 22.27 0.20 -1.68 16 25 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 26 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 27 C -0.12 -1.43 10.05 22.27 0.22 -1.20 16 28 C -0.12 -1.59 9.67 22.27 0.22 -1.38 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.42 8.66 6.36 -92.71 -0.59 8.07 16 33 H 0.08 2.64 7.58 -2.39 -0.02 2.62 16 34 H 0.09 2.74 7.70 -2.39 -0.02 2.72 16 35 H 0.09 3.53 8.03 -2.39 -0.02 3.52 16 36 H 0.07 2.98 5.00 -2.39 -0.01 2.97 16 37 H 0.38 13.94 9.11 -74.06 -0.67 13.26 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.08 2.95 8.04 -2.39 -0.02 2.93 16 40 H 0.08 3.04 8.03 -2.39 -0.02 3.02 16 41 H 0.13 1.72 6.93 -2.91 -0.02 1.70 16 42 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.14 1.48 8.04 -2.91 -0.02 1.46 16 Total: -1.00 -67.00 367.37 -0.08 -67.08 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.39 Total: 33.28 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 5.00 Total: 14.36 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.65 Total: -96.61 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.68 Total: -62.97 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.64 Total: 44.85 kcal Total: -67.00 -0.08 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326201916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.215 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds