Wall clock time and date at job start Tue Mar 31 2020 17:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.64027 * 2 1 4 4 C 1.55161 * 110.71945 * 123.14433 * 2 1 3 5 5 C 1.54908 * 101.57914 * 154.04143 * 4 2 1 6 6 N 1.47430 * 104.83211 * 322.98831 * 5 4 2 7 7 C 1.34775 * 125.64483 * 204.09209 * 6 5 4 8 8 O 1.21352 * 119.99831 * 180.02562 * 7 6 5 9 9 C 1.49450 * 120.00452 * 0.02790 * 7 6 5 10 10 O 1.21352 * 119.99717 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99874 * 179.97438 * 9 7 6 12 12 C 1.46505 * 119.99771 * 179.72491 * 11 9 7 13 13 C 1.50701 * 109.47113 * 180.27520 * 12 11 9 14 14 C 1.38298 * 119.92610 * 269.72346 * 13 12 11 15 15 C 1.38105 * 120.06859 * 179.72960 * 14 13 12 16 16 C 1.38885 * 119.92637 * 0.54120 * 15 14 13 17 17 O 1.35748 * 120.06733 * 179.75058 * 16 15 14 18 18 C 1.34833 * 116.99823 * 174.44570 * 17 16 15 19 19 H 1.07995 * 119.99878 * 5.05677 * 18 17 16 20 20 C 1.38654 * 119.99705 * 185.05732 * 18 17 16 21 21 N 1.31557 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99557 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47405 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46883 * 120.00301 * 22 20 18 25 25 H 1.48496 * 109.47278 * 239.99680 * 22 20 18 26 26 C 1.38877 * 119.86030 * 359.73239 * 16 15 14 27 27 C 1.38099 * 119.93344 * 0.02562 * 26 16 15 28 28 C 1.47019 * 108.70390 * 24.35861 * 6 5 4 29 29 H 1.09003 * 109.46921 * 296.86109 * 1 2 3 30 30 H 1.09002 * 109.47219 * 56.85398 * 1 2 3 31 31 H 1.08996 * 109.47702 * 176.85771 * 1 2 3 32 32 H 1.09000 * 111.00499 * 35.96248 * 4 2 1 33 33 H 1.09000 * 111.03120 * 272.12891 * 4 2 1 34 34 H 1.08998 * 110.36822 * 204.15204 * 5 4 2 35 35 H 1.08996 * 110.36684 * 81.82712 * 5 4 2 36 36 H 0.96997 * 120.00481 * 359.97438 * 11 9 7 37 37 H 1.09000 * 109.46896 * 300.27398 * 12 11 9 38 38 H 1.09001 * 109.47235 * 60.27060 * 12 11 9 39 39 H 1.08004 * 119.97020 * 359.97438 * 14 13 12 40 40 H 1.07993 * 120.03873 * 180.27465 * 15 14 13 41 41 H 0.96998 * 119.99731 * 180.02562 * 21 20 18 42 42 H 1.08006 * 120.03297 * 180.02562 * 26 16 15 43 43 H 1.08002 * 119.96497 * 179.97438 * 27 26 16 44 44 H 1.08993 * 109.88627 * 118.12919 * 28 6 5 45 45 H 1.09002 * 109.88399 * 239.29710 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0790 -0.7935 1.2151 5 6 3.4652 -1.2447 0.6913 6 7 3.2493 -1.5470 -0.7355 7 6 4.0003 -2.3785 -1.4845 8 8 3.7294 -2.5527 -2.6545 9 6 5.1668 -3.0861 -0.8743 10 8 5.4379 -2.9116 0.2956 11 7 5.9174 -3.9179 -1.6233 12 6 7.0644 -4.6069 -1.0266 13 6 7.7333 -5.4647 -2.0696 14 6 7.3349 -6.7778 -2.2419 15 6 7.9420 -7.5650 -3.2006 16 6 8.9613 -7.0399 -3.9844 17 8 9.5634 -7.8126 -4.9241 18 6 10.4635 -7.2099 -5.7271 19 1 10.7370 -6.1796 -5.5539 20 6 11.0379 -7.9131 -6.7750 21 7 10.7044 -9.1680 -6.9861 22 14 12.2844 -7.0780 -7.8878 23 1 12.4848 -5.6758 -7.4420 24 1 13.5759 -7.8079 -7.8198 25 1 11.7840 -7.0868 -9.2859 26 6 9.3628 -5.7226 -3.8050 27 6 8.7483 -4.9391 -2.8480 28 6 2.0831 -0.7864 -1.2074 29 1 -0.3633 0.4643 0.9168 30 1 -0.3634 0.5619 -0.8605 31 1 -0.3634 -1.0260 -0.0563 32 1 1.4468 -1.6529 1.4384 33 1 2.1820 -0.1496 2.0885 34 1 3.7993 -2.1365 1.2216 35 1 4.1929 -0.4410 0.8028 36 1 5.7004 -4.0577 -2.5583 37 1 7.7753 -3.8707 -0.6512 38 1 6.7232 -5.2350 -0.2037 39 1 6.5455 -7.1870 -1.6288 40 1 7.6275 -8.5889 -3.3378 41 1 11.1065 -9.6600 -7.7190 42 1 10.1548 -5.3113 -4.4133 43 1 9.0605 -3.9148 -2.7078 44 1 2.3847 -0.0961 -1.9951 45 1 1.3215 -1.4701 -1.5824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328550268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:19 Heat of formation + Delta-G solvation = -70.175485 kcal Electronic energy + Delta-G solvation = -27024.865429 eV Core-core repulsion = 23008.106047 eV Total energy + Delta-G solvation = -4016.759382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91842 -39.37535 -38.88226 -37.86374 -36.91604 -34.69004 -33.21741 -32.38258 -30.32940 -30.09364 -30.03543 -27.64338 -26.15831 -25.15729 -23.91897 -22.46999 -22.07918 -20.73478 -20.69889 -20.00332 -18.14103 -18.03085 -17.15087 -17.03456 -16.69765 -15.76853 -15.74154 -14.89418 -14.86675 -14.56335 -14.29220 -14.18208 -13.96348 -13.82467 -13.72305 -13.43547 -13.33413 -13.20445 -12.89026 -12.80911 -12.69861 -12.22342 -12.14768 -11.81041 -11.70798 -11.41569 -11.39872 -11.24129 -11.00358 -10.97417 -10.83191 -10.70924 -10.48197 -9.62440 -9.44428 -9.22296 -9.01183 -8.92460 -8.30339 -7.35452 -6.54109 -4.12813 1.34136 1.88364 2.11815 2.35145 3.07529 3.09615 3.12140 3.15219 3.44155 3.89786 4.01324 4.17140 4.33934 4.35946 4.53791 4.86265 4.89576 4.96890 5.00185 5.10857 5.18283 5.18804 5.23554 5.33936 5.36880 5.48285 5.50601 5.60648 5.62573 5.64691 5.74332 5.78297 5.81093 5.87433 6.10545 6.26394 6.32048 6.57382 6.77931 6.89214 6.94972 7.10831 7.21851 7.25162 7.33783 7.61878 7.69383 7.90693 7.93617 8.91292 9.58947 10.63367 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.001871 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.121440 B =14958.441886 C =15347.366414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.133 4.133 5 C 0.096 3.904 6 N -0.594 5.594 7 C 0.518 3.482 8 O -0.519 6.519 9 C 0.506 3.494 10 O -0.526 6.526 11 N -0.687 5.687 12 C 0.178 3.822 13 C -0.220 4.220 14 C -0.052 4.052 15 C -0.195 4.195 16 C 0.162 3.838 17 O -0.172 6.172 18 C -0.393 4.393 19 H 0.095 0.905 20 C 0.040 3.960 21 N -0.858 5.858 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.237 4.237 27 C -0.048 4.048 28 C 0.108 3.892 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.271 0.729 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 16.927 14.779 27.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.171 4.171 5 C -0.026 4.026 6 N -0.329 5.329 7 C 0.301 3.699 8 O -0.394 6.394 9 C 0.286 3.714 10 O -0.404 6.404 11 N -0.340 5.340 12 C 0.057 3.943 13 C -0.221 4.221 14 C -0.071 4.071 15 C -0.214 4.214 16 C 0.107 3.893 17 O -0.075 6.075 18 C -0.469 4.469 19 H 0.112 0.888 20 C -0.165 4.165 21 N -0.492 5.492 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.200 1.200 26 C -0.256 4.256 27 C -0.067 4.067 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.127 0.873 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.866 16.439 14.689 27.161 hybrid contribution 0.610 0.404 -1.079 1.303 sum -15.257 16.843 13.610 26.489 Atomic orbital electron populations 1.21753 0.93513 1.02404 1.02288 1.22253 0.96549 0.99485 0.94193 0.89537 1.22963 0.95993 1.00454 0.97679 1.22679 0.97019 1.02841 0.80031 1.48254 1.29318 1.43060 1.12253 1.20007 0.83777 0.80100 0.85975 1.90791 1.70200 1.62739 1.15713 1.19947 0.83847 0.80958 0.86659 1.90693 1.70272 1.63584 1.15818 1.46251 1.29098 1.43300 1.15339 1.20142 0.85785 0.94186 0.94204 1.19133 1.03595 0.95304 1.04106 1.20532 0.97629 0.92843 0.96079 1.20218 0.99803 1.00967 1.00437 1.19448 0.90640 0.89819 0.89378 1.83978 1.49181 1.35325 1.38966 1.21419 1.18575 0.97989 1.08940 0.88809 1.25331 0.98424 0.95789 0.96944 1.70045 1.41083 1.08451 1.29649 0.85619 0.79234 0.79059 0.79370 1.19019 1.20055 1.20041 1.21160 1.05676 0.95088 1.03701 1.20640 0.94229 0.98125 0.93706 1.22151 0.87444 0.94748 0.97047 0.91909 0.92184 0.92216 0.90363 0.89541 0.87875 0.90908 0.74897 0.90927 0.90875 0.86876 0.86279 0.91897 0.85330 0.87322 0.90963 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 9.17 37.16 0.34 -0.27 16 2 C -0.11 -0.58 3.53 -88.77 -0.31 -0.89 16 3 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.13 -0.75 6.53 -24.58 -0.16 -0.91 16 5 C 0.10 0.81 6.06 -2.53 -0.02 0.80 16 6 N -0.59 -6.30 3.33 -171.02 -0.57 -6.87 16 7 C 0.52 6.90 7.91 -11.59 -0.09 6.80 16 8 O -0.52 -8.14 16.80 5.50 0.09 -8.05 16 9 C 0.51 6.84 7.86 -11.59 -0.09 6.75 16 10 O -0.53 -7.53 13.78 5.50 0.08 -7.46 16 11 N -0.69 -9.22 5.54 -61.91 -0.34 -9.56 16 12 C 0.18 2.41 5.80 -5.19 -0.03 2.38 16 13 C -0.22 -3.51 5.25 -104.58 -0.55 -4.06 16 14 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 15 C -0.19 -3.94 9.99 -39.39 -0.39 -4.33 16 16 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 17 O -0.17 -4.79 9.76 0.05 0.00 -4.79 16 18 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 19 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.69 13.67 55.48 0.76 -23.94 16 22 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 C -0.24 -4.93 9.17 -39.40 -0.36 -5.29 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 28 C 0.11 0.90 6.48 -3.06 -0.02 0.88 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 1.01 6.16 -51.93 -0.32 0.69 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.41 5.67 7.94 -40.82 -0.32 5.34 16 37 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.13 2.69 5.64 -52.48 -0.30 2.40 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.63 7.78 -51.93 -0.40 0.23 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -31.46 378.86 -8.05 -39.51 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.23 Total: 6.89 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.52 Total: -6.56 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.15 Total: -40.36 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.30 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.46 -8.05 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328550268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.670 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds