Wall clock time and date at job start Tue Mar 31 2020 17:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.64027 * 2 1 4 4 C 1.55161 * 110.71945 * 123.14433 * 2 1 3 5 5 C 1.54908 * 101.57914 * 154.04143 * 4 2 1 6 6 N 1.47430 * 104.83211 * 322.98831 * 5 4 2 7 7 C 1.34775 * 125.64483 * 204.09209 * 6 5 4 8 8 O 1.21352 * 119.99831 * 180.02562 * 7 6 5 9 9 C 1.49450 * 120.00452 * 0.02790 * 7 6 5 10 10 O 1.21352 * 119.99717 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99874 * 179.97438 * 9 7 6 12 12 C 1.46505 * 119.99771 * 179.72491 * 11 9 7 13 13 C 1.50701 * 109.47113 * 180.27520 * 12 11 9 14 14 C 1.38298 * 119.92610 * 269.72346 * 13 12 11 15 15 C 1.38105 * 120.06859 * 179.72960 * 14 13 12 16 16 C 1.38885 * 119.92637 * 0.54120 * 15 14 13 17 17 O 1.35748 * 120.06733 * 179.75058 * 16 15 14 18 18 C 1.34833 * 116.99823 * 174.44570 * 17 16 15 19 19 H 1.07995 * 119.99878 * 5.05677 * 18 17 16 20 20 C 1.38654 * 119.99705 * 185.05732 * 18 17 16 21 21 N 1.31557 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99557 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47405 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46883 * 120.00301 * 22 20 18 25 25 H 1.48496 * 109.47278 * 239.99680 * 22 20 18 26 26 C 1.38877 * 119.86030 * 359.73239 * 16 15 14 27 27 C 1.38099 * 119.93344 * 0.02562 * 26 16 15 28 28 C 1.47019 * 108.70390 * 24.35861 * 6 5 4 29 29 H 1.09003 * 109.46921 * 296.86109 * 1 2 3 30 30 H 1.09002 * 109.47219 * 56.85398 * 1 2 3 31 31 H 1.08996 * 109.47702 * 176.85771 * 1 2 3 32 32 H 1.09000 * 111.00499 * 35.96248 * 4 2 1 33 33 H 1.09000 * 111.03120 * 272.12891 * 4 2 1 34 34 H 1.08998 * 110.36822 * 204.15204 * 5 4 2 35 35 H 1.08996 * 110.36684 * 81.82712 * 5 4 2 36 36 H 0.96997 * 120.00481 * 359.97438 * 11 9 7 37 37 H 1.09000 * 109.46896 * 300.27398 * 12 11 9 38 38 H 1.09001 * 109.47235 * 60.27060 * 12 11 9 39 39 H 1.08004 * 119.97020 * 359.97438 * 14 13 12 40 40 H 1.07993 * 120.03873 * 180.27465 * 15 14 13 41 41 H 0.96998 * 119.99731 * 180.02562 * 21 20 18 42 42 H 1.08006 * 120.03297 * 180.02562 * 26 16 15 43 43 H 1.08002 * 119.96497 * 179.97438 * 27 26 16 44 44 H 1.08993 * 109.88627 * 118.12919 * 28 6 5 45 45 H 1.09002 * 109.88399 * 239.29710 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0790 -0.7935 1.2151 5 6 3.4652 -1.2447 0.6913 6 7 3.2493 -1.5470 -0.7355 7 6 4.0003 -2.3785 -1.4845 8 8 3.7294 -2.5527 -2.6545 9 6 5.1668 -3.0861 -0.8743 10 8 5.4379 -2.9116 0.2956 11 7 5.9174 -3.9179 -1.6233 12 6 7.0644 -4.6069 -1.0266 13 6 7.7333 -5.4647 -2.0696 14 6 7.3349 -6.7778 -2.2419 15 6 7.9420 -7.5650 -3.2006 16 6 8.9613 -7.0399 -3.9844 17 8 9.5634 -7.8126 -4.9241 18 6 10.4635 -7.2099 -5.7271 19 1 10.7370 -6.1796 -5.5539 20 6 11.0379 -7.9131 -6.7750 21 7 10.7044 -9.1680 -6.9861 22 14 12.2844 -7.0780 -7.8878 23 1 12.4848 -5.6758 -7.4420 24 1 13.5759 -7.8079 -7.8198 25 1 11.7840 -7.0868 -9.2859 26 6 9.3628 -5.7226 -3.8050 27 6 8.7483 -4.9391 -2.8480 28 6 2.0831 -0.7864 -1.2074 29 1 -0.3633 0.4643 0.9168 30 1 -0.3634 0.5619 -0.8605 31 1 -0.3634 -1.0260 -0.0563 32 1 1.4468 -1.6529 1.4384 33 1 2.1820 -0.1496 2.0885 34 1 3.7993 -2.1365 1.2216 35 1 4.1929 -0.4410 0.8028 36 1 5.7004 -4.0577 -2.5583 37 1 7.7753 -3.8707 -0.6512 38 1 6.7232 -5.2350 -0.2037 39 1 6.5455 -7.1870 -1.6288 40 1 7.6275 -8.5889 -3.3378 41 1 11.1065 -9.6600 -7.7190 42 1 10.1548 -5.3113 -4.4133 43 1 9.0605 -3.9148 -2.7078 44 1 2.3847 -0.0961 -1.9951 45 1 1.3215 -1.4701 -1.5824 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328550268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:18 Heat of formation + Delta-G solvation = -90.942915 kcal Electronic energy + Delta-G solvation = -27025.765972 eV Core-core repulsion = 23008.106047 eV Total energy + Delta-G solvation = -4017.659925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89579 -40.87559 -39.97265 -38.77853 -38.51326 -35.89159 -34.31292 -33.90363 -31.87629 -31.54382 -30.63096 -28.49698 -27.67545 -26.62543 -24.80034 -23.67623 -23.34105 -22.15356 -21.32954 -20.96271 -19.89576 -19.09890 -18.73891 -18.11248 -17.57122 -16.82312 -16.77303 -16.45002 -16.23704 -16.01299 -15.56658 -15.37049 -15.34069 -14.86591 -14.71279 -14.45730 -14.41271 -14.25115 -14.08033 -13.79085 -13.65968 -13.42186 -13.30435 -13.07574 -12.76089 -12.65803 -12.55955 -12.38374 -12.28022 -12.10607 -11.95539 -11.68751 -11.51120 -11.22234 -10.86368 -10.63944 -10.30531 -9.87718 -9.83156 -9.04378 -8.50011 -6.18276 0.29663 0.46417 0.55980 1.28744 1.34895 1.43469 1.52912 2.07990 2.15741 2.45094 2.82627 3.12426 3.32215 3.46511 3.57564 3.62432 3.81022 3.89719 4.00125 4.14896 4.28485 4.37445 4.41680 4.53738 4.56877 4.60761 4.66076 4.77385 4.77874 4.83691 4.92884 5.01313 5.01865 5.09240 5.12515 5.13822 5.21502 5.24085 5.31384 5.45055 5.49166 5.67061 5.70820 5.97710 5.99922 6.13635 6.20598 6.58874 6.88206 6.94834 7.73625 8.72974 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.001871 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.121440 B =14958.441886 C =15347.366414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.099 0.901 4 C -0.124 4.124 5 C 0.091 3.909 6 N -0.590 5.590 7 C 0.513 3.487 8 O -0.552 6.552 9 C 0.510 3.490 10 O -0.532 6.532 11 N -0.687 5.687 12 C 0.183 3.817 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.206 4.206 16 C 0.124 3.876 17 O -0.228 6.228 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.269 1.269 26 C -0.245 4.245 27 C -0.045 4.045 28 C 0.100 3.900 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 20.103 17.302 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.117 0.883 4 C -0.162 4.162 5 C -0.031 4.031 6 N -0.323 5.323 7 C 0.296 3.704 8 O -0.431 6.431 9 C 0.291 3.709 10 O -0.410 6.410 11 N -0.339 5.339 12 C 0.062 3.938 13 C -0.189 4.189 14 C -0.061 4.061 15 C -0.225 4.225 16 C 0.072 3.928 17 O -0.135 6.135 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.265 4.265 27 C -0.063 4.063 28 C -0.022 4.022 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.250 0.750 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.168 0.832 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.247 19.672 17.297 31.363 hybrid contribution 0.757 -0.396 -1.508 1.733 sum -16.490 19.276 15.789 29.879 Atomic orbital electron populations 1.21744 0.92458 1.02328 1.03185 1.22255 0.97254 0.99513 0.92475 0.88267 1.22968 0.93954 1.00885 0.98355 1.22836 0.99083 1.02497 0.78647 1.48450 1.28990 1.41773 1.13080 1.19982 0.84055 0.80634 0.85771 1.90775 1.71178 1.64207 1.16950 1.19946 0.83805 0.80737 0.86432 1.90699 1.70475 1.63832 1.16012 1.46115 1.29070 1.43434 1.15329 1.20143 0.86012 0.94349 0.93301 1.19483 1.01685 0.95088 1.02689 1.20922 0.97458 0.92807 0.94894 1.20469 0.99525 1.01532 1.00996 1.20014 0.92000 0.91097 0.89648 1.83948 1.51218 1.37112 1.41172 1.21883 1.18962 0.98628 1.09506 0.87876 1.26594 1.00578 0.96443 0.98371 1.70185 1.43736 1.10474 1.31195 0.84526 0.76281 0.78493 0.76907 1.17412 1.19301 1.19448 1.21256 1.05948 0.94565 1.04692 1.20976 0.93793 0.99188 0.92348 1.22388 0.86590 0.94682 0.98526 0.90515 0.91872 0.92745 0.90293 0.87158 0.89143 0.90311 0.74965 0.89587 0.89294 0.83241 0.86593 0.91775 0.86146 0.84101 0.91224 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.17 71.98 0.66 -0.16 16 2 C -0.10 -0.78 3.53 -9.60 -0.03 -0.82 16 3 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 4 C -0.12 -1.00 6.53 31.99 0.21 -0.79 16 5 C 0.09 1.32 6.06 86.85 0.53 1.85 16 6 N -0.59 -11.54 3.33 -813.35 -2.70 -14.24 16 7 C 0.51 12.97 7.91 87.27 0.69 13.66 16 8 O -0.55 -16.99 16.80 -3.25 -0.05 -17.05 16 9 C 0.51 12.63 7.86 87.27 0.69 13.32 16 10 O -0.53 -13.81 13.78 -3.25 -0.04 -13.85 16 11 N -0.69 -16.47 5.54 -468.13 -2.59 -19.07 16 12 C 0.18 4.21 5.80 85.63 0.50 4.71 16 13 C -0.19 -5.43 5.25 -19.84 -0.10 -5.53 16 14 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 15 C -0.21 -8.40 9.99 22.39 0.22 -8.18 16 16 C 0.12 5.97 6.65 22.58 0.15 6.12 16 17 O -0.23 -13.54 9.76 -22.75 -0.22 -13.76 16 18 C -0.41 -23.78 9.49 67.92 0.64 -23.13 16 19 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 20 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 21 N -0.92 -55.93 13.67 21.61 0.30 -55.63 16 22 Si 1.02 42.53 29.55 68.60 2.03 44.55 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.25 -10.27 9.17 22.39 0.21 -10.07 16 27 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 28 C 0.10 1.50 6.48 86.73 0.56 2.06 16 29 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.39 8.08 -2.39 -0.02 0.37 16 32 H 0.08 0.66 8.05 -2.39 -0.02 0.64 16 33 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.09 1.58 6.16 -2.39 -0.01 1.57 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.41 10.38 7.94 -92.71 -0.74 9.64 16 37 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 38 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 39 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.12 5.16 5.64 -2.91 -0.02 5.15 16 43 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.11 7.78 -2.39 -0.02 1.09 16 Total: -1.00 -73.36 378.86 2.80 -70.56 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.29 Total: 28.56 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.81 Total: -10.07 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -5.00 Total: -88.94 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.32 Total: -44.66 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.36 2.80 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328550268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.386 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds