Wall clock time and date at job start Tue Mar 31 2020 17:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.78595 * 2 1 4 4 C 1.53243 * 109.62741 * 120.48945 * 2 1 3 5 5 N 1.46890 * 109.34167 * 65.87945 * 4 2 1 6 6 C 1.46897 * 111.00359 * 187.25341 * 5 4 2 7 7 C 1.50697 * 109.47749 * 169.99946 * 6 5 4 8 8 C 1.38387 * 119.89148 * 269.98056 * 7 6 5 9 9 C 1.38136 * 120.21302 * 179.97438 * 8 7 6 10 10 C 1.38565 * 119.89306 * 0.11279 * 9 8 7 11 11 O 1.35683 * 133.02432 * 179.97438 * 10 9 8 12 12 C 1.34292 * 108.28587 * 179.97438 * 11 10 9 13 13 O 1.21503 * 125.36476 * 179.97438 * 12 11 10 14 14 O 1.34285 * 109.25764 * 0.24571 * 12 11 10 15 15 C 1.35668 * 108.29120 * 359.60391 * 14 12 11 16 16 C 1.38132 * 119.89445 * 89.99843 * 7 6 5 17 17 C 1.46901 * 111.27156 * 63.10479 * 5 4 2 18 18 C 1.53244 * 109.33833 * 296.89354 * 17 5 4 19 19 H 1.09000 * 109.63039 * 294.12346 * 18 17 5 20 20 C 1.52994 * 109.78895 * 173.62997 * 18 17 5 21 21 N 1.47081 * 109.62919 * 239.51655 * 2 1 3 22 22 C 1.36937 * 120.88163 * 111.45249 * 21 2 1 23 23 H 1.07995 * 119.99882 * 151.88011 * 22 21 2 24 24 C 1.38820 * 119.99910 * 331.88134 * 22 21 2 25 25 N 1.31614 * 120.00027 * 342.76514 * 24 22 21 26 26 Si 1.86797 * 119.99835 * 162.76559 * 24 22 21 27 27 H 1.48501 * 109.47124 * 89.99910 * 26 24 22 28 28 H 1.48497 * 109.47137 * 209.99694 * 26 24 22 29 29 H 1.48499 * 109.47398 * 329.99992 * 26 24 22 30 30 H 1.09001 * 109.46804 * 299.51034 * 1 2 3 31 31 H 1.08997 * 109.47146 * 59.51321 * 1 2 3 32 32 H 1.08994 * 109.47377 * 179.51180 * 1 2 3 33 33 H 1.09001 * 109.48918 * 305.91398 * 4 2 1 34 34 H 1.08999 * 109.51081 * 185.85471 * 4 2 1 35 35 H 1.09005 * 109.47028 * 49.99621 * 6 5 4 36 36 H 1.08999 * 109.47116 * 290.00212 * 6 5 4 37 37 H 1.08003 * 119.89260 * 359.97438 * 8 7 6 38 38 H 1.08002 * 120.05456 * 180.02562 * 9 8 7 39 39 H 1.08008 * 120.05279 * 0.02670 * 16 7 6 40 40 H 1.09001 * 109.49143 * 56.85034 * 17 5 4 41 41 H 1.08992 * 109.49674 * 176.93957 * 17 5 4 42 42 H 1.08998 * 109.47560 * 296.63198 * 20 18 17 43 43 H 1.09002 * 109.47259 * 56.63172 * 20 18 17 44 44 H 1.09006 * 109.47232 * 176.62648 * 20 18 17 45 45 H 0.97002 * 120.00107 * 175.15059 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 1.2438 5 7 1.6747 -2.1514 1.1608 6 6 1.9978 -2.8538 2.4099 7 6 1.3883 -4.2317 2.3837 8 6 0.1095 -4.4297 2.8741 9 6 -0.4558 -5.6899 2.8528 10 6 0.2608 -6.7597 2.3409 11 8 -0.0234 -8.0781 2.1924 12 6 1.0395 -8.6776 1.6317 13 8 1.1185 -9.8595 1.3610 14 8 2.0032 -7.7661 1.4230 15 6 1.5486 -6.5608 1.8485 16 6 2.1081 -5.2932 1.8706 17 6 2.3148 -2.8027 0.0100 18 6 1.8110 -2.1553 -1.2843 19 1 0.7480 -2.3624 -1.4078 20 6 2.5858 -2.7149 -2.4790 21 7 2.0241 -0.7028 -1.1939 22 6 2.6651 -0.0227 -2.1948 23 1 3.3962 -0.5278 -2.8085 24 6 2.3750 1.3159 -2.4206 25 7 1.2745 1.8431 -1.9275 26 14 3.5467 2.3690 -3.4243 27 1 3.1679 2.3016 -4.8586 28 1 3.4703 3.7767 -2.9578 29 1 4.9336 1.8659 -3.2546 30 1 -0.3633 0.5062 0.8944 31 1 -0.3633 0.5214 -0.8856 32 1 -0.3634 -1.0276 -0.0088 33 1 1.5992 -0.2917 2.1357 34 1 3.1297 -0.6418 1.2966 35 1 1.5963 -2.2949 3.2553 36 1 3.0800 -2.9370 2.5105 37 1 -0.4483 -3.5962 3.2747 38 1 -1.4542 -5.8414 3.2358 39 1 3.1063 -5.1359 1.4892 40 1 3.3960 -2.6833 0.0796 41 1 2.0649 -3.8636 0.0071 42 1 3.6384 -2.4470 -2.3872 43 1 2.4876 -3.8003 -2.4996 44 1 2.1834 -2.2961 -3.4015 45 1 1.1060 2.7934 -2.0249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331583905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:20 Heat of formation + Delta-G solvation = -24.289886 kcal Electronic energy + Delta-G solvation = -29255.568027 eV Core-core repulsion = 25240.798394 eV Total energy + Delta-G solvation = -4014.769633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.27731 -39.67784 -38.58179 -38.19246 -37.72084 -34.89025 -32.61089 -31.97532 -31.04277 -30.32117 -27.92220 -26.56824 -25.98860 -24.31313 -24.21413 -23.93992 -23.01068 -21.74388 -20.74073 -19.14496 -18.64024 -18.46354 -18.20769 -17.19901 -16.35561 -15.54666 -15.48632 -15.27311 -14.87680 -14.59411 -14.49191 -14.47848 -14.18911 -13.91710 -13.86845 -13.57462 -13.23312 -13.02692 -12.34745 -12.24778 -11.92901 -11.85723 -11.79089 -11.60674 -11.54107 -11.20162 -10.94797 -10.91459 -10.64853 -10.56528 -10.46296 -10.07229 -9.96861 -9.53522 -9.30776 -9.28107 -8.87515 -8.47758 -7.91754 -6.66039 -5.76433 -3.21951 0.58109 0.62872 1.70634 1.77425 2.13964 3.04383 3.35888 3.44150 3.45370 3.79654 4.24080 4.31689 4.47608 4.51653 4.67532 4.81263 4.84272 5.24720 5.26090 5.36193 5.42883 5.48428 5.55967 5.71902 5.73614 5.83228 6.00567 6.06517 6.07174 6.12612 6.18233 6.27461 6.28930 6.37682 6.56796 6.67920 6.75244 6.79188 6.92740 6.98886 7.04256 7.19639 7.41078 7.44941 7.68452 7.79758 7.94235 8.43766 9.22530 9.84218 10.42597 11.28565 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.002953 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.272340 B = 9478.953170 C =10173.982759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.200 3.800 3 H 0.091 0.909 4 C 0.042 3.958 5 N -0.523 5.523 6 C 0.088 3.912 7 C -0.041 4.041 8 C -0.073 4.073 9 C -0.074 4.074 10 C 0.007 3.993 11 O -0.237 6.237 12 C 0.591 3.409 13 O -0.420 6.420 14 O -0.235 6.235 15 C 0.014 3.986 16 C -0.069 4.069 17 C 0.043 3.957 18 C 0.172 3.828 19 H 0.032 0.968 20 C -0.138 4.138 21 N -0.584 5.584 22 C -0.249 4.249 23 H 0.069 0.931 24 C 0.003 3.997 25 N -0.896 5.896 26 Si 0.895 3.105 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.029 0.971 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 -11.342 12.306 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.093 3.907 3 H 0.109 0.891 4 C -0.087 4.087 5 N -0.247 5.247 6 C -0.040 4.040 7 C -0.041 4.041 8 C -0.091 4.091 9 C -0.092 4.092 10 C -0.037 4.037 11 O -0.150 6.150 12 C 0.399 3.601 13 O -0.312 6.312 14 O -0.148 6.148 15 C -0.029 4.029 16 C -0.088 4.088 17 C -0.086 4.086 18 C 0.065 3.935 19 H 0.050 0.950 20 C -0.196 4.196 21 N -0.308 5.308 22 C -0.378 4.378 23 H 0.087 0.913 24 C -0.195 4.195 25 N -0.540 5.540 26 Si 0.724 3.276 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.862 -11.889 11.983 16.982 hybrid contribution 1.436 0.368 -0.473 1.556 sum -0.426 -11.520 11.510 16.290 Atomic orbital electron populations 1.21973 0.97808 0.99265 1.00524 1.20356 0.92708 0.95536 0.82119 0.89070 1.22903 0.97749 0.86841 1.01179 1.62000 1.59000 1.02886 1.00836 1.21113 0.97858 0.89887 0.95116 1.19777 0.94017 0.94734 0.95613 1.21030 0.94351 0.95689 0.98071 1.20077 1.00477 0.88578 1.00065 1.19599 0.95215 0.82719 1.06147 1.85244 1.39420 1.20047 1.70303 1.21449 0.76257 0.86089 0.76311 1.91287 1.77980 1.08067 1.53827 1.85256 1.40344 1.16973 1.72271 1.19501 0.93448 0.86525 1.03473 1.20011 1.01693 0.86510 1.00587 1.22794 0.96040 0.97426 0.92351 1.20442 0.96468 0.85885 0.90669 0.94990 1.21799 1.00738 0.97833 0.99223 1.44278 1.66986 1.01071 1.18425 1.19178 1.14652 0.93556 1.10424 0.91303 1.24985 0.96125 0.99050 0.99348 1.70050 1.22581 1.11609 1.49760 0.86439 0.81021 0.80027 0.80072 1.21543 1.21705 1.20735 0.96114 0.90636 0.94755 0.91914 0.95564 0.89326 0.93830 0.83075 0.83543 0.83755 0.95243 0.91991 0.92746 0.94335 0.91970 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.98 37.16 0.33 -2.54 16 2 C 0.20 4.28 2.35 -67.49 -0.16 4.12 16 3 H 0.09 2.25 6.25 -51.93 -0.32 1.93 16 4 C 0.04 0.71 5.01 -3.70 -0.02 0.69 16 5 N -0.52 -7.78 4.12 -235.77 -0.97 -8.75 16 6 C 0.09 0.96 5.12 -4.98 -0.03 0.93 16 7 C -0.04 -0.40 4.89 -104.61 -0.51 -0.91 16 8 C -0.07 -0.61 9.69 -39.56 -0.38 -1.00 16 9 C -0.07 -0.62 10.06 -39.50 -0.40 -1.01 16 10 C 0.01 0.08 7.35 -39.07 -0.29 -0.21 16 11 O -0.24 -2.81 10.79 -31.02 -0.33 -3.15 16 12 C 0.59 7.67 9.67 101.05 0.98 8.65 16 13 O -0.42 -6.35 18.04 -27.22 -0.49 -6.84 16 14 O -0.24 -2.93 10.79 -30.95 -0.33 -3.26 16 15 C 0.01 0.16 7.35 -39.06 -0.29 -0.13 16 16 C -0.07 -0.71 7.86 -39.50 -0.31 -1.02 16 17 C 0.04 0.69 4.64 -3.70 -0.02 0.68 16 18 C 0.17 3.38 3.24 -67.49 -0.22 3.16 16 19 H 0.03 0.69 7.60 -51.93 -0.39 0.29 16 20 C -0.14 -2.50 7.96 37.15 0.30 -2.20 16 21 N -0.58 -13.41 2.72 -157.00 -0.43 -13.84 16 22 C -0.25 -6.33 8.71 -15.06 -0.13 -6.47 16 23 H 0.07 1.74 6.17 -52.49 -0.32 1.41 16 24 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 25 N -0.90 -24.19 9.81 55.49 0.54 -23.65 16 26 Si 0.89 20.83 29.59 -169.99 -5.03 15.80 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.85 6.77 -51.93 -0.35 1.50 16 32 H 0.03 0.70 7.06 -51.93 -0.37 0.33 16 33 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 34 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 36 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 37 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.14 1.36 7.93 -52.48 -0.42 0.94 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.89 5.65 -51.93 -0.29 0.60 16 42 H 0.05 1.00 7.32 -51.93 -0.38 0.62 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 1.21 7.79 -51.93 -0.40 0.81 16 45 H 0.25 6.67 8.32 -40.82 -0.34 6.33 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -28.45 358.49 -9.04 -37.49 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.17 Total: -1.95 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.23 Total: 2.75 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.86 Total: -46.24 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.16 Total: -13.25 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.45 -9.04 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331583905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.197 kcal (2) G-P(sol) polarization free energy of solvation -28.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds