Wall clock time and date at job start Tue Mar 31 2020 17:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.78595 * 2 1 4 4 C 1.53243 * 109.62741 * 120.48945 * 2 1 3 5 5 N 1.46890 * 109.34167 * 65.87945 * 4 2 1 6 6 C 1.46897 * 111.00359 * 187.25341 * 5 4 2 7 7 C 1.50697 * 109.47749 * 169.99946 * 6 5 4 8 8 C 1.38387 * 119.89148 * 269.98056 * 7 6 5 9 9 C 1.38136 * 120.21302 * 179.97438 * 8 7 6 10 10 C 1.38565 * 119.89306 * 0.11279 * 9 8 7 11 11 O 1.35683 * 133.02432 * 179.97438 * 10 9 8 12 12 C 1.34292 * 108.28587 * 179.97438 * 11 10 9 13 13 O 1.21503 * 125.36476 * 179.97438 * 12 11 10 14 14 O 1.34285 * 109.25764 * 0.24571 * 12 11 10 15 15 C 1.35668 * 108.29120 * 359.60391 * 14 12 11 16 16 C 1.38132 * 119.89445 * 89.99843 * 7 6 5 17 17 C 1.46901 * 111.27156 * 63.10479 * 5 4 2 18 18 C 1.53244 * 109.33833 * 296.89354 * 17 5 4 19 19 H 1.09000 * 109.63039 * 294.12346 * 18 17 5 20 20 C 1.52994 * 109.78895 * 173.62997 * 18 17 5 21 21 N 1.47081 * 109.62919 * 239.51655 * 2 1 3 22 22 C 1.36937 * 120.88163 * 111.45249 * 21 2 1 23 23 H 1.07995 * 119.99882 * 151.88011 * 22 21 2 24 24 C 1.38820 * 119.99910 * 331.88134 * 22 21 2 25 25 N 1.31614 * 120.00027 * 342.76514 * 24 22 21 26 26 Si 1.86797 * 119.99835 * 162.76559 * 24 22 21 27 27 H 1.48501 * 109.47124 * 89.99910 * 26 24 22 28 28 H 1.48497 * 109.47137 * 209.99694 * 26 24 22 29 29 H 1.48499 * 109.47398 * 329.99992 * 26 24 22 30 30 H 1.09001 * 109.46804 * 299.51034 * 1 2 3 31 31 H 1.08997 * 109.47146 * 59.51321 * 1 2 3 32 32 H 1.08994 * 109.47377 * 179.51180 * 1 2 3 33 33 H 1.09001 * 109.48918 * 305.91398 * 4 2 1 34 34 H 1.08999 * 109.51081 * 185.85471 * 4 2 1 35 35 H 1.09005 * 109.47028 * 49.99621 * 6 5 4 36 36 H 1.08999 * 109.47116 * 290.00212 * 6 5 4 37 37 H 1.08003 * 119.89260 * 359.97438 * 8 7 6 38 38 H 1.08002 * 120.05456 * 180.02562 * 9 8 7 39 39 H 1.08008 * 120.05279 * 0.02670 * 16 7 6 40 40 H 1.09001 * 109.49143 * 56.85034 * 17 5 4 41 41 H 1.08992 * 109.49674 * 176.93957 * 17 5 4 42 42 H 1.08998 * 109.47560 * 296.63198 * 20 18 17 43 43 H 1.09002 * 109.47259 * 56.63172 * 20 18 17 44 44 H 1.09006 * 109.47232 * 176.62648 * 20 18 17 45 45 H 0.97002 * 120.00107 * 175.15059 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 1.2438 5 7 1.6747 -2.1514 1.1608 6 6 1.9978 -2.8538 2.4099 7 6 1.3883 -4.2317 2.3837 8 6 0.1095 -4.4297 2.8741 9 6 -0.4558 -5.6899 2.8528 10 6 0.2608 -6.7597 2.3409 11 8 -0.0234 -8.0781 2.1924 12 6 1.0395 -8.6776 1.6317 13 8 1.1185 -9.8595 1.3610 14 8 2.0032 -7.7661 1.4230 15 6 1.5486 -6.5608 1.8485 16 6 2.1081 -5.2932 1.8706 17 6 2.3148 -2.8027 0.0100 18 6 1.8110 -2.1553 -1.2843 19 1 0.7480 -2.3624 -1.4078 20 6 2.5858 -2.7149 -2.4790 21 7 2.0241 -0.7028 -1.1939 22 6 2.6651 -0.0227 -2.1948 23 1 3.3962 -0.5278 -2.8085 24 6 2.3750 1.3159 -2.4206 25 7 1.2745 1.8431 -1.9275 26 14 3.5467 2.3690 -3.4243 27 1 3.1679 2.3016 -4.8586 28 1 3.4703 3.7767 -2.9578 29 1 4.9336 1.8659 -3.2546 30 1 -0.3633 0.5062 0.8944 31 1 -0.3633 0.5214 -0.8856 32 1 -0.3634 -1.0276 -0.0088 33 1 1.5992 -0.2917 2.1357 34 1 3.1297 -0.6418 1.2966 35 1 1.5963 -2.2949 3.2553 36 1 3.0800 -2.9370 2.5105 37 1 -0.4483 -3.5962 3.2747 38 1 -1.4542 -5.8414 3.2358 39 1 3.1063 -5.1359 1.4892 40 1 3.3960 -2.6833 0.0796 41 1 2.0649 -3.8636 0.0071 42 1 3.6384 -2.4470 -2.3872 43 1 2.4876 -3.8003 -2.4996 44 1 2.1834 -2.2961 -3.4015 45 1 1.1060 2.7934 -2.0249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331583905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:19 Heat of formation + Delta-G solvation = -38.948915 kcal Electronic energy + Delta-G solvation = -29256.203690 eV Core-core repulsion = 25240.798394 eV Total energy + Delta-G solvation = -4015.405296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.16902 -40.66360 -39.79880 -39.10403 -38.80084 -36.27405 -34.21039 -33.43050 -31.97882 -31.41588 -29.58933 -27.80371 -27.26660 -25.85897 -25.24209 -24.91699 -24.05844 -22.88683 -22.26965 -20.30988 -19.93275 -19.40492 -19.10620 -18.15281 -17.99272 -17.08126 -16.40018 -16.31054 -16.22163 -15.82539 -15.65146 -15.40308 -15.31541 -15.21765 -15.06175 -14.76389 -14.64471 -14.31520 -13.63484 -13.43010 -13.28901 -13.18365 -12.88822 -12.79481 -12.73700 -12.67882 -12.41904 -12.35625 -12.21331 -12.17438 -12.04336 -11.85469 -11.57245 -11.19687 -10.92760 -10.41470 -10.04115 -9.70848 -9.13764 -8.49624 -7.71869 -5.18460 -0.19977 -0.12306 0.75053 0.85589 1.29558 1.48048 1.51717 1.58506 2.29078 2.58130 3.03504 3.20337 3.39323 3.40502 3.66800 3.68080 3.94275 4.07404 4.13607 4.28197 4.39670 4.48221 4.57335 4.64120 4.69078 4.75011 4.76783 4.83622 4.87688 4.89399 4.92167 5.01797 5.07718 5.16209 5.31633 5.36479 5.39366 5.42273 5.45372 5.57974 5.70375 5.75853 5.84397 5.90193 6.10818 6.26548 6.34295 6.53342 7.30485 8.00820 8.53171 9.29524 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.002953 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.272340 B = 9478.953170 C =10173.982759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.195 3.805 3 H 0.052 0.948 4 C 0.056 3.944 5 N -0.527 5.527 6 C 0.091 3.909 7 C -0.045 4.045 8 C -0.062 4.062 9 C -0.064 4.064 10 C -0.005 4.005 11 O -0.237 6.237 12 C 0.595 3.405 13 O -0.450 6.450 14 O -0.241 6.241 15 C -0.005 4.005 16 C -0.070 4.070 17 C 0.057 3.943 18 C 0.164 3.836 19 H 0.015 0.985 20 C -0.131 4.131 21 N -0.601 5.601 22 C -0.249 4.249 23 H 0.067 0.933 24 C -0.046 4.046 25 N -0.918 5.918 26 Si 0.948 3.052 27 H -0.293 1.293 28 H -0.296 1.296 29 H -0.276 1.276 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.018 0.982 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.178 0.822 38 H 0.175 0.825 39 H 0.150 0.850 40 H 0.025 0.975 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 -11.961 14.310 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.071 0.929 4 C -0.072 4.072 5 N -0.251 5.251 6 C -0.036 4.036 7 C -0.046 4.046 8 C -0.080 4.080 9 C -0.082 4.082 10 C -0.049 4.049 11 O -0.150 6.150 12 C 0.404 3.596 13 O -0.344 6.344 14 O -0.154 6.154 15 C -0.048 4.048 16 C -0.089 4.089 17 C -0.073 4.073 18 C 0.058 3.942 19 H 0.032 0.968 20 C -0.189 4.189 21 N -0.324 5.324 22 C -0.380 4.380 23 H 0.085 0.915 24 C -0.242 4.242 25 N -0.564 5.564 26 Si 0.778 3.222 27 H -0.220 1.220 28 H -0.222 1.222 29 H -0.202 1.202 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.036 0.964 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.195 0.805 38 H 0.193 0.807 39 H 0.168 0.832 40 H 0.043 0.957 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.048 -12.518 14.007 18.896 hybrid contribution 1.448 0.560 -1.066 1.883 sum -0.600 -11.958 12.940 17.629 Atomic orbital electron populations 1.21745 0.97646 0.99008 0.99424 1.20300 0.92732 0.94353 0.83803 0.92944 1.22577 0.97129 0.88028 0.99508 1.61897 1.58948 1.01963 1.02326 1.21178 0.98752 0.90120 0.93520 1.19757 0.94673 0.93980 0.96190 1.21365 0.93684 0.96323 0.96639 1.20458 1.01387 0.87654 0.98660 1.19986 0.95476 0.82525 1.06889 1.85220 1.38892 1.20883 1.70000 1.21380 0.76389 0.85863 0.75967 1.91256 1.78693 1.09272 1.55188 1.85220 1.40318 1.17582 1.72321 1.19706 0.94060 0.86385 1.04662 1.20127 1.02081 0.86210 1.00517 1.22547 0.95548 0.98098 0.91062 1.20623 0.95824 0.84336 0.93377 0.96767 1.21714 0.99841 0.99662 0.97641 1.44533 1.66963 1.02496 1.18434 1.19422 1.14254 0.93833 1.10473 0.91549 1.25571 0.97433 1.00197 1.00952 1.70202 1.23755 1.11087 1.51388 0.85584 0.79710 0.78399 0.78474 1.22045 1.22221 1.20171 0.94137 0.94815 0.94227 0.89253 0.96418 0.86813 0.93056 0.80465 0.80715 0.83199 0.95723 0.89868 0.93314 0.91188 0.94214 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 8.98 71.98 0.65 -4.31 16 2 C 0.19 8.29 2.35 44.96 0.11 8.40 16 3 H 0.05 2.64 6.25 -2.39 -0.01 2.63 16 4 C 0.06 1.79 5.01 86.39 0.43 2.22 16 5 N -0.53 -13.96 4.12 -899.84 -3.71 -17.67 16 6 C 0.09 1.58 5.12 85.56 0.44 2.02 16 7 C -0.05 -0.71 4.89 -19.86 -0.10 -0.80 16 8 C -0.06 -0.75 9.69 22.28 0.22 -0.53 16 9 C -0.06 -0.81 10.06 22.32 0.22 -0.59 16 10 C -0.01 -0.10 7.35 22.60 0.17 0.07 16 11 O -0.24 -5.31 10.79 14.67 0.16 -5.15 16 12 C 0.60 15.18 9.67 113.37 1.10 16.27 16 13 O -0.45 -13.69 18.04 27.43 0.49 -13.19 16 14 O -0.24 -5.81 10.79 14.91 0.16 -5.65 16 15 C 0.00 -0.10 7.35 22.60 0.17 0.07 16 16 C -0.07 -1.24 7.86 22.32 0.18 -1.06 16 17 C 0.06 1.68 4.64 86.38 0.40 2.08 16 18 C 0.16 6.31 3.24 44.96 0.15 6.45 16 19 H 0.01 0.61 7.60 -2.39 -0.02 0.59 16 20 C -0.13 -4.63 7.96 71.98 0.57 -4.06 16 21 N -0.60 -27.65 2.72 -650.62 -1.77 -29.42 16 22 C -0.25 -12.90 8.71 84.04 0.73 -12.16 16 23 H 0.07 3.39 6.17 -2.91 -0.02 3.38 16 24 C -0.05 -2.44 4.91 84.86 0.42 -2.02 16 25 N -0.92 -51.12 9.81 21.65 0.21 -50.91 16 26 Si 0.95 43.74 29.59 68.60 2.03 45.77 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 29 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.03 1.67 6.77 -2.39 -0.02 1.65 16 32 H 0.04 1.56 7.06 -2.39 -0.02 1.54 16 33 H 0.09 2.36 7.99 -2.39 -0.02 2.34 16 34 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 1.47 7.91 -2.38 -0.02 1.45 16 36 H 0.05 0.86 8.07 -2.39 -0.02 0.85 16 37 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.15 2.41 7.93 -2.91 -0.02 2.39 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.08 2.13 5.65 -2.39 -0.01 2.11 16 42 H 0.05 1.76 7.32 -2.39 -0.02 1.74 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.04 1.55 7.79 -2.38 -0.02 1.53 16 45 H 0.24 13.40 8.32 -92.71 -0.77 12.63 16 Total: -1.00 -64.11 358.49 4.42 -59.69 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.01 Total: 4.49 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.84 Total: 12.04 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -5.27 Total: -98.00 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.81 Total: -23.99 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -64.11 4.42 -59.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331583905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.738 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds