Wall clock time and date at job start Tue Mar 31 2020 17:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.62427 * 2 1 4 4 C 1.53246 * 109.62396 * 239.61596 * 2 1 3 5 5 N 1.46894 * 109.33623 * 186.45986 * 4 2 1 6 6 C 1.46905 * 110.99745 * 187.25189 * 5 4 2 7 7 C 1.50704 * 109.47098 * 169.99836 * 6 5 4 8 8 C 1.38369 * 119.89462 * 269.72865 * 7 6 5 9 9 C 1.38143 * 120.21763 * 179.74486 * 8 7 6 10 10 C 1.38572 * 119.88924 * 0.54984 * 9 8 7 11 11 O 1.35676 * 133.02448 * 179.73694 * 10 9 8 12 12 C 1.34291 * 108.28374 * 179.97438 * 11 10 9 13 13 O 1.21512 * 125.36853 * 179.97438 * 12 11 10 14 14 O 1.34287 * 109.26360 * 359.97438 * 12 11 10 15 15 C 1.35684 * 108.28396 * 0.02562 * 14 12 11 16 16 C 1.38138 * 119.88834 * 89.99858 * 7 6 5 17 17 C 1.46901 * 111.26924 * 63.10630 * 5 4 2 18 18 C 1.53230 * 109.33944 * 296.89056 * 17 5 4 19 19 H 1.09006 * 109.78897 * 173.63598 * 18 17 5 20 20 C 1.53002 * 109.63265 * 294.12145 * 18 17 5 21 21 N 1.47076 * 109.63050 * 120.58962 * 2 1 3 22 22 C 1.36942 * 120.88034 * 350.91116 * 21 2 1 23 23 H 1.07994 * 120.00043 * 26.32687 * 22 21 2 24 24 C 1.38810 * 119.99763 * 206.32570 * 22 21 2 25 25 N 1.31623 * 120.00136 * 17.42696 * 24 22 21 26 26 Si 1.86803 * 119.99739 * 197.42388 * 24 22 21 27 27 H 1.48497 * 109.47158 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47105 * 120.00266 * 26 24 22 29 29 H 1.48498 * 109.47085 * 239.99987 * 26 24 22 30 30 H 1.08994 * 109.47148 * 180.38959 * 1 2 3 31 31 H 1.09004 * 109.46453 * 300.38144 * 1 2 3 32 32 H 1.08994 * 109.47022 * 60.37919 * 1 2 3 33 33 H 1.09001 * 109.49144 * 66.50253 * 4 2 1 34 34 H 1.09003 * 109.51142 * 306.43258 * 4 2 1 35 35 H 1.08998 * 109.46881 * 50.00257 * 6 5 4 36 36 H 1.08999 * 109.47369 * 290.00116 * 6 5 4 37 37 H 1.08001 * 119.89629 * 0.02562 * 8 7 6 38 38 H 1.08006 * 120.05893 * 180.25413 * 9 8 7 39 39 H 1.07996 * 120.06022 * 359.96105 * 16 7 6 40 40 H 1.08995 * 109.49384 * 56.85160 * 17 5 4 41 41 H 1.09008 * 109.48984 * 176.93474 * 17 5 4 42 42 H 1.09002 * 109.47080 * 179.02892 * 20 18 17 43 43 H 1.09000 * 109.47168 * 299.03400 * 20 18 17 44 44 H 1.08997 * 109.46888 * 59.02882 * 20 18 17 45 45 H 0.96997 * 119.99451 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0447 -0.7301 -1.2452 5 7 3.5054 -0.8624 -1.1625 6 6 4.0567 -1.4020 -2.4127 7 6 5.5597 -1.2950 -2.3864 8 6 6.1790 -0.1601 -2.8796 9 6 7.5560 -0.0528 -2.8539 10 6 8.3201 -1.0898 -2.3431 11 8 9.6568 -1.2688 -2.1949 12 6 9.8611 -2.4724 -1.6353 13 8 10.9465 -2.9473 -1.3651 14 8 8.6769 -3.0684 -1.4215 15 6 7.6968 -2.2342 -1.8512 16 6 6.3148 -2.3326 -1.8751 17 6 3.9015 -1.6871 -0.0133 18 6 3.4630 -0.9963 1.2823 19 1 3.6514 -1.6522 2.1323 20 6 4.2417 0.3089 1.4579 21 7 2.0242 -0.7049 1.1925 22 6 1.1672 -1.0804 2.1925 23 1 0.1258 -1.2615 1.9714 24 6 1.6373 -1.2282 3.4902 25 7 2.7881 -0.6927 3.8383 26 14 0.6363 -2.1870 4.7425 27 1 -0.6097 -2.6833 4.1051 28 1 1.4332 -3.3388 5.2360 29 1 0.2895 -1.3006 5.8823 30 1 -0.3633 -1.0276 0.0070 31 1 -0.3632 0.5198 0.8866 32 1 -0.3633 0.5079 -0.8933 33 1 1.7810 -0.1600 -2.1360 34 1 1.5923 -1.7203 -1.2997 35 1 3.6667 -0.8335 -3.2570 36 1 3.7686 -2.4483 -2.5151 37 1 5.5837 0.6463 -3.2817 38 1 8.0365 0.8359 -3.2358 39 1 5.8290 -3.2187 -1.4943 40 1 3.4232 -2.6640 -0.0845 41 1 4.9845 -1.8112 -0.0107 42 1 3.9155 0.8066 2.3712 43 1 5.3075 0.0901 1.5241 44 1 4.0570 0.9599 0.6035 45 1 3.1167 -0.7964 4.7450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331583914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:29 Heat of formation + Delta-G solvation = -23.523942 kcal Electronic energy + Delta-G solvation = -29356.648561 eV Core-core repulsion = 25341.912141 eV Total energy + Delta-G solvation = -4014.736419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.21705 -39.63609 -38.54669 -38.13226 -37.68320 -34.88142 -32.67037 -31.73897 -31.13080 -30.36130 -27.88828 -26.43067 -26.06012 -24.31873 -24.24671 -23.76664 -22.96271 -21.80785 -20.73557 -19.06826 -18.65602 -18.40145 -18.12213 -17.13514 -16.33241 -15.58716 -15.39344 -15.31124 -14.76532 -14.70418 -14.42961 -14.40473 -14.12674 -13.83156 -13.80194 -13.66358 -13.24015 -12.98935 -12.45340 -11.99748 -11.89882 -11.83519 -11.75928 -11.66564 -11.47557 -11.24101 -10.96601 -10.92115 -10.66191 -10.52632 -10.48314 -10.04294 -9.94933 -9.51440 -9.28428 -9.22821 -8.82928 -8.48927 -7.90819 -6.65828 -5.77774 -3.18611 0.63443 0.68381 1.76178 1.83954 2.19847 3.09155 3.35768 3.44663 3.45461 3.85365 4.28943 4.33744 4.48156 4.54275 4.71999 4.85666 4.88968 5.25221 5.26755 5.37994 5.47290 5.51342 5.58531 5.73108 5.75751 5.81917 6.01929 6.05590 6.10432 6.15147 6.19962 6.26782 6.28536 6.38001 6.57550 6.73864 6.80630 6.81079 6.91934 6.99100 7.06698 7.20024 7.42294 7.45406 7.71071 7.80632 7.93897 8.44150 9.22920 9.85482 10.42668 11.29645 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.003355 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.514644 B = 8343.076228 C = 9500.905868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.034 0.966 4 C 0.050 3.950 5 N -0.523 5.523 6 C 0.089 3.911 7 C -0.040 4.040 8 C -0.074 4.074 9 C -0.074 4.074 10 C 0.008 3.992 11 O -0.237 6.237 12 C 0.592 3.408 13 O -0.420 6.420 14 O -0.235 6.235 15 C 0.015 3.985 16 C -0.067 4.067 17 C 0.035 3.965 18 C 0.198 3.802 19 H 0.095 0.905 20 C -0.134 4.134 21 N -0.585 5.585 22 C -0.249 4.249 23 H 0.071 0.929 24 C 0.003 3.997 25 N -0.897 5.897 26 Si 0.896 3.104 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.025 0.975 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.018 0.982 44 H 0.033 0.967 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 0.668 -16.228 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.065 3.935 3 H 0.051 0.949 4 C -0.079 4.079 5 N -0.248 5.248 6 C -0.039 4.039 7 C -0.041 4.041 8 C -0.092 4.092 9 C -0.092 4.092 10 C -0.036 4.036 11 O -0.150 6.150 12 C 0.399 3.601 13 O -0.312 6.312 14 O -0.148 6.148 15 C -0.028 4.028 16 C -0.086 4.086 17 C -0.093 4.093 18 C 0.091 3.909 19 H 0.113 0.887 20 C -0.193 4.193 21 N -0.308 5.308 22 C -0.379 4.379 23 H 0.089 0.911 24 C -0.196 4.196 25 N -0.542 5.542 26 Si 0.727 3.273 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.219 1.219 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.037 0.963 44 H 0.052 0.948 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.928 0.838 -15.817 16.912 hybrid contribution -0.404 -1.429 0.787 1.680 sum 5.524 -0.591 -15.030 16.024 Atomic orbital electron populations 1.21808 0.96062 1.01345 1.00394 1.20448 0.92237 0.94239 0.86580 0.94884 1.22703 0.86150 0.99362 0.99733 1.62010 1.11276 1.50333 1.01156 1.21096 0.88653 0.99223 0.94938 1.19726 0.96263 0.92417 0.95718 1.20989 0.92315 0.97682 0.98226 1.20060 0.92446 0.96556 1.00162 1.19593 0.79685 0.98212 1.06142 1.85237 1.23961 1.35425 1.70399 1.21451 0.84588 0.77774 0.76277 1.91286 1.20529 1.65525 1.53842 1.85266 1.15301 1.42267 1.71956 1.19502 0.91014 0.89011 1.03311 1.20017 0.87056 1.01208 1.00362 1.22996 0.98952 0.94510 0.92888 1.20391 0.82868 0.95288 0.92309 0.88723 1.21942 0.96468 0.99430 1.01437 1.44304 1.03501 1.64892 1.18122 1.19226 0.92847 1.39218 0.86595 0.91107 1.24982 0.97622 1.00286 0.96699 1.70021 1.21125 1.45105 1.17957 0.86318 0.79561 0.79799 0.81652 1.20452 1.21743 1.21866 0.92937 0.91830 0.94224 0.91970 0.95199 0.89497 0.93851 0.83190 0.83581 0.83730 0.95659 0.91943 0.90905 0.96287 0.94776 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.93 37.16 0.29 -2.09 16 2 C 0.17 3.28 3.25 -67.49 -0.22 3.06 16 3 H 0.03 0.68 7.64 -51.93 -0.40 0.28 16 4 C 0.05 0.77 4.91 -3.70 -0.02 0.75 16 5 N -0.52 -7.81 4.11 -235.76 -0.97 -8.78 16 6 C 0.09 0.97 5.12 -4.97 -0.03 0.94 16 7 C -0.04 -0.42 4.89 -104.61 -0.51 -0.93 16 8 C -0.07 -0.65 9.69 -39.57 -0.38 -1.03 16 9 C -0.07 -0.66 10.06 -39.49 -0.40 -1.06 16 10 C 0.01 0.09 7.35 -39.07 -0.29 -0.20 16 11 O -0.24 -2.99 10.79 -30.99 -0.33 -3.32 16 12 C 0.59 8.18 9.67 101.05 0.98 9.16 16 13 O -0.42 -6.69 18.04 -27.23 -0.49 -7.18 16 14 O -0.23 -3.16 10.79 -31.01 -0.33 -3.50 16 15 C 0.02 0.19 7.35 -39.07 -0.29 -0.10 16 16 C -0.07 -0.75 7.87 -39.50 -0.31 -1.06 16 17 C 0.04 0.62 4.72 -3.70 -0.02 0.61 16 18 C 0.20 4.37 2.36 -67.49 -0.16 4.21 16 19 H 0.10 2.43 6.10 -51.93 -0.32 2.11 16 20 C -0.13 -2.91 8.96 37.16 0.33 -2.57 16 21 N -0.59 -13.43 2.73 -157.00 -0.43 -13.86 16 22 C -0.25 -6.35 8.73 -15.06 -0.13 -6.48 16 23 H 0.07 1.78 6.16 -52.49 -0.32 1.45 16 24 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 25 N -0.90 -24.56 9.80 55.49 0.54 -24.02 16 26 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.05 0.93 7.54 -51.93 -0.39 0.53 16 31 H 0.06 1.20 7.57 -51.93 -0.39 0.81 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.81 7.99 -51.93 -0.41 0.39 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.04 0.46 8.07 -51.93 -0.42 0.05 16 37 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 39 H 0.14 1.52 7.93 -52.49 -0.42 1.11 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.03 5.65 -51.92 -0.29 0.74 16 42 H 0.07 1.82 6.91 -51.93 -0.36 1.47 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.03 0.70 7.08 -51.93 -0.37 0.33 16 45 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -28.82 358.49 -9.04 -37.86 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.17 Total: -1.75 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.23 Total: 3.18 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.85 Total: -46.66 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.16 Total: -14.00 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.82 -9.04 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331583914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.340 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds