Wall clock time and date at job start Tue Mar 31 2020 17:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.62427 * 2 1 4 4 C 1.53246 * 109.62396 * 239.61596 * 2 1 3 5 5 N 1.46894 * 109.33623 * 186.45986 * 4 2 1 6 6 C 1.46905 * 110.99745 * 187.25189 * 5 4 2 7 7 C 1.50704 * 109.47098 * 169.99836 * 6 5 4 8 8 C 1.38369 * 119.89462 * 269.72865 * 7 6 5 9 9 C 1.38143 * 120.21763 * 179.74486 * 8 7 6 10 10 C 1.38572 * 119.88924 * 0.54984 * 9 8 7 11 11 O 1.35676 * 133.02448 * 179.73694 * 10 9 8 12 12 C 1.34291 * 108.28374 * 179.97438 * 11 10 9 13 13 O 1.21512 * 125.36853 * 179.97438 * 12 11 10 14 14 O 1.34287 * 109.26360 * 359.97438 * 12 11 10 15 15 C 1.35684 * 108.28396 * 0.02562 * 14 12 11 16 16 C 1.38138 * 119.88834 * 89.99858 * 7 6 5 17 17 C 1.46901 * 111.26924 * 63.10630 * 5 4 2 18 18 C 1.53230 * 109.33944 * 296.89056 * 17 5 4 19 19 H 1.09006 * 109.78897 * 173.63598 * 18 17 5 20 20 C 1.53002 * 109.63265 * 294.12145 * 18 17 5 21 21 N 1.47076 * 109.63050 * 120.58962 * 2 1 3 22 22 C 1.36942 * 120.88034 * 350.91116 * 21 2 1 23 23 H 1.07994 * 120.00043 * 26.32687 * 22 21 2 24 24 C 1.38810 * 119.99763 * 206.32570 * 22 21 2 25 25 N 1.31623 * 120.00136 * 17.42696 * 24 22 21 26 26 Si 1.86803 * 119.99739 * 197.42388 * 24 22 21 27 27 H 1.48497 * 109.47158 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47105 * 120.00266 * 26 24 22 29 29 H 1.48498 * 109.47085 * 239.99987 * 26 24 22 30 30 H 1.08994 * 109.47148 * 180.38959 * 1 2 3 31 31 H 1.09004 * 109.46453 * 300.38144 * 1 2 3 32 32 H 1.08994 * 109.47022 * 60.37919 * 1 2 3 33 33 H 1.09001 * 109.49144 * 66.50253 * 4 2 1 34 34 H 1.09003 * 109.51142 * 306.43258 * 4 2 1 35 35 H 1.08998 * 109.46881 * 50.00257 * 6 5 4 36 36 H 1.08999 * 109.47369 * 290.00116 * 6 5 4 37 37 H 1.08001 * 119.89629 * 0.02562 * 8 7 6 38 38 H 1.08006 * 120.05893 * 180.25413 * 9 8 7 39 39 H 1.07996 * 120.06022 * 359.96105 * 16 7 6 40 40 H 1.08995 * 109.49384 * 56.85160 * 17 5 4 41 41 H 1.09008 * 109.48984 * 176.93474 * 17 5 4 42 42 H 1.09002 * 109.47080 * 179.02892 * 20 18 17 43 43 H 1.09000 * 109.47168 * 299.03400 * 20 18 17 44 44 H 1.08997 * 109.46888 * 59.02882 * 20 18 17 45 45 H 0.96997 * 119.99451 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0447 -0.7301 -1.2452 5 7 3.5054 -0.8624 -1.1625 6 6 4.0567 -1.4020 -2.4127 7 6 5.5597 -1.2950 -2.3864 8 6 6.1790 -0.1601 -2.8796 9 6 7.5560 -0.0528 -2.8539 10 6 8.3201 -1.0898 -2.3431 11 8 9.6568 -1.2688 -2.1949 12 6 9.8611 -2.4724 -1.6353 13 8 10.9465 -2.9473 -1.3651 14 8 8.6769 -3.0684 -1.4215 15 6 7.6968 -2.2342 -1.8512 16 6 6.3148 -2.3326 -1.8751 17 6 3.9015 -1.6871 -0.0133 18 6 3.4630 -0.9963 1.2823 19 1 3.6514 -1.6522 2.1323 20 6 4.2417 0.3089 1.4579 21 7 2.0242 -0.7049 1.1925 22 6 1.1672 -1.0804 2.1925 23 1 0.1258 -1.2615 1.9714 24 6 1.6373 -1.2282 3.4902 25 7 2.7881 -0.6927 3.8383 26 14 0.6363 -2.1870 4.7425 27 1 -0.6097 -2.6833 4.1051 28 1 1.4332 -3.3388 5.2360 29 1 0.2895 -1.3006 5.8823 30 1 -0.3633 -1.0276 0.0070 31 1 -0.3632 0.5198 0.8866 32 1 -0.3633 0.5079 -0.8933 33 1 1.7810 -0.1600 -2.1360 34 1 1.5923 -1.7203 -1.2997 35 1 3.6667 -0.8335 -3.2570 36 1 3.7686 -2.4483 -2.5151 37 1 5.5837 0.6463 -3.2817 38 1 8.0365 0.8359 -3.2358 39 1 5.8290 -3.2187 -1.4943 40 1 3.4232 -2.6640 -0.0845 41 1 4.9845 -1.8112 -0.0107 42 1 3.9155 0.8066 2.3712 43 1 5.3075 0.0901 1.5241 44 1 4.0570 0.9599 0.6035 45 1 3.1167 -0.7964 4.7450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331583914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:28 Heat of formation + Delta-G solvation = -38.802564 kcal Electronic energy + Delta-G solvation = -29357.311091 eV Core-core repulsion = 25341.912141 eV Total energy + Delta-G solvation = -4015.398950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.18044 -40.66269 -39.80348 -39.11946 -38.80588 -36.27309 -34.24030 -33.29215 -32.11481 -31.43681 -29.56570 -27.56486 -27.47255 -25.90596 -25.25725 -24.81637 -24.08314 -23.00974 -22.19921 -20.30781 -19.92192 -19.42038 -19.11156 -18.15983 -17.96740 -17.14560 -16.36634 -16.29621 -16.24051 -15.88901 -15.62694 -15.41691 -15.29041 -15.21340 -15.06342 -14.76485 -14.60445 -14.43801 -13.61258 -13.38077 -13.28575 -13.00364 -12.91945 -12.89670 -12.81304 -12.64419 -12.53864 -12.28188 -12.18991 -12.14363 -12.09752 -11.78615 -11.56737 -11.18134 -10.95431 -10.42734 -10.04537 -9.71339 -9.13811 -8.49634 -7.75284 -5.16124 -0.20134 -0.12890 0.72903 0.84917 1.28844 1.45981 1.50197 1.57454 2.29076 2.56440 3.02669 3.21357 3.38718 3.40044 3.67378 3.69620 3.93902 4.07299 4.13477 4.31831 4.41010 4.46462 4.58849 4.65798 4.70077 4.75105 4.77204 4.84423 4.89712 4.96081 4.98172 5.02094 5.03297 5.15071 5.28372 5.36492 5.37023 5.42738 5.51608 5.63306 5.68354 5.75661 5.81618 5.89198 6.05686 6.25607 6.35219 6.52118 7.28791 8.01699 8.52411 9.29418 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.003355 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.514644 B = 8343.076228 C = 9500.905868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.162 3.838 3 H 0.021 0.979 4 C 0.059 3.941 5 N -0.527 5.527 6 C 0.092 3.908 7 C -0.046 4.046 8 C -0.060 4.060 9 C -0.063 4.063 10 C -0.006 4.006 11 O -0.236 6.236 12 C 0.595 3.405 13 O -0.451 6.451 14 O -0.244 6.244 15 C -0.008 4.008 16 C -0.074 4.074 17 C 0.053 3.947 18 C 0.194 3.806 19 H 0.050 0.950 20 C -0.114 4.114 21 N -0.602 5.602 22 C -0.245 4.245 23 H 0.073 0.927 24 C -0.050 4.050 25 N -0.924 5.924 26 Si 0.949 3.051 27 H -0.269 1.269 28 H -0.298 1.298 29 H -0.299 1.299 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.024 0.976 35 H 0.122 0.878 36 H 0.049 0.951 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.144 0.856 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.032 0.968 43 H 0.025 0.975 44 H 0.045 0.955 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 1.777 -19.537 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 H 0.039 0.961 4 C -0.069 4.069 5 N -0.251 5.251 6 C -0.035 4.035 7 C -0.047 4.047 8 C -0.078 4.078 9 C -0.081 4.081 10 C -0.049 4.049 11 O -0.149 6.149 12 C 0.404 3.596 13 O -0.344 6.344 14 O -0.157 6.157 15 C -0.052 4.052 16 C -0.093 4.093 17 C -0.076 4.076 18 C 0.088 3.912 19 H 0.068 0.932 20 C -0.173 4.173 21 N -0.325 5.325 22 C -0.375 4.375 23 H 0.090 0.910 24 C -0.245 4.245 25 N -0.571 5.571 26 Si 0.780 3.220 27 H -0.193 1.193 28 H -0.226 1.226 29 H -0.226 1.226 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.042 0.958 35 H 0.140 0.860 36 H 0.067 0.933 37 H 0.201 0.799 38 H 0.195 0.805 39 H 0.162 0.838 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.789 1.953 -19.172 19.857 hybrid contribution -0.136 -1.691 1.723 2.418 sum 4.653 0.262 -17.449 18.061 Atomic orbital electron populations 1.21724 0.94864 1.01072 1.01159 1.20703 0.93413 0.93681 0.86546 0.96095 1.22552 0.86286 0.99090 0.99019 1.61914 1.11133 1.50078 1.01987 1.21204 0.88591 1.00131 0.93579 1.19813 0.96072 0.92764 0.96001 1.21394 0.92319 0.97551 0.96526 1.20510 0.92463 0.96564 0.98598 1.20020 0.79029 0.98898 1.06998 1.85209 1.24973 1.34629 1.70067 1.21392 0.84358 0.77930 0.75968 1.91252 1.21554 1.66412 1.55223 1.85223 1.15591 1.42845 1.72082 1.19750 0.91253 0.89436 1.04728 1.20152 0.86710 1.01836 1.00629 1.22589 0.99263 0.93648 0.92106 1.20259 0.82926 0.94756 0.93308 0.93203 1.21703 0.96684 0.99214 0.99740 1.44558 1.03590 1.65605 1.18790 1.19502 0.93270 1.37577 0.87189 0.90968 1.25576 0.98735 1.01861 0.98371 1.70186 1.22554 1.46794 1.17521 0.85468 0.78665 0.78232 0.79660 1.19335 1.22592 1.22632 0.93589 0.94337 0.90251 0.87893 0.95773 0.85955 0.93295 0.79883 0.80484 0.83807 0.96690 0.90982 0.94901 0.95555 0.93585 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.93 71.98 0.57 -3.65 16 2 C 0.16 5.86 3.25 44.97 0.15 6.00 16 3 H 0.02 0.82 7.64 -2.39 -0.02 0.81 16 4 C 0.06 1.61 4.91 86.39 0.42 2.03 16 5 N -0.53 -13.82 4.11 -899.81 -3.69 -17.51 16 6 C 0.09 1.56 5.12 85.56 0.44 2.00 16 7 C -0.05 -0.77 4.89 -19.86 -0.10 -0.87 16 8 C -0.06 -0.75 9.69 22.28 0.22 -0.54 16 9 C -0.06 -0.88 10.06 22.33 0.22 -0.65 16 10 C -0.01 -0.12 7.35 22.60 0.17 0.04 16 11 O -0.24 -5.77 10.79 14.77 0.16 -5.61 16 12 C 0.59 16.70 9.67 113.37 1.10 17.80 16 13 O -0.45 -14.77 18.04 27.41 0.49 -14.27 16 14 O -0.24 -6.67 10.79 14.71 0.16 -6.51 16 15 C -0.01 -0.20 7.35 22.60 0.17 -0.03 16 16 C -0.07 -1.52 7.87 22.33 0.18 -1.35 16 17 C 0.05 1.81 4.72 86.38 0.41 2.21 16 18 C 0.19 8.64 2.36 44.96 0.11 8.75 16 19 H 0.05 2.67 6.10 -2.38 -0.01 2.65 16 20 C -0.11 -4.99 8.96 71.98 0.65 -4.35 16 21 N -0.60 -27.60 2.73 -650.64 -1.78 -29.38 16 22 C -0.24 -12.62 8.73 84.03 0.73 -11.89 16 23 H 0.07 3.63 6.16 -2.91 -0.02 3.61 16 24 C -0.05 -2.71 4.93 84.86 0.42 -2.29 16 25 N -0.92 -52.72 9.80 21.65 0.21 -52.51 16 26 Si 0.95 44.34 29.59 68.60 2.03 46.37 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 29 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 30 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 31 H 0.04 1.41 7.57 -2.38 -0.02 1.39 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.02 7.99 -2.39 -0.02 2.00 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 1.32 7.91 -2.39 -0.02 1.30 16 36 H 0.05 0.84 8.07 -2.39 -0.02 0.82 16 37 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 38 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 2.88 7.93 -2.91 -0.02 2.86 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 2.29 5.65 -2.38 -0.01 2.28 16 42 H 0.03 1.68 6.91 -2.39 -0.02 1.66 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.05 1.85 7.08 -2.39 -0.02 1.83 16 45 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -66.52 358.49 4.43 -62.09 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.01 Total: 4.12 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.84 Total: 13.22 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -5.26 Total: -99.39 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.81 Total: -26.39 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.52 4.43 -62.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331583914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.286 kcal (2) G-P(sol) polarization free energy of solvation -66.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds