Wall clock time and date at job start Tue Mar 31 2020 17:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 N 1.46500 * 109.46961 * 119.99594 * 2 1 3 5 5 C 1.34773 * 120.00432 * 275.00011 * 4 2 1 6 6 O 1.21353 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.49454 * 120.00135 * 179.72278 * 5 4 2 8 8 O 1.21343 * 119.99752 * 0.28157 * 7 5 4 9 9 N 1.34777 * 120.00164 * 180.27489 * 7 5 4 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46671 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46681 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00300 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00286 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99512 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00323 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47012 * 119.99855 * 16 14 12 19 19 H 1.48503 * 109.47163 * 240.00040 * 16 14 12 20 20 C 1.50700 * 109.47629 * 239.99941 * 2 1 3 21 21 C 1.38286 * 120.11849 * 280.00203 * 20 2 1 22 22 C 1.37926 * 120.35404 * 179.86571 * 21 20 2 23 23 C 1.39292 * 120.23908 * 0.05344 * 22 21 20 24 24 C 1.38877 * 118.87433 * 0.17932 * 23 22 21 25 25 C 1.37750 * 120.78778 * 359.38010 * 24 23 22 26 26 C 1.51642 * 107.03860 * 179.45500 * 24 23 22 27 27 C 1.54710 * 101.91652 * 344.49785 * 26 24 23 28 28 O 1.36132 * 129.88140 * 180.61094 * 23 22 21 29 29 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46936 * 300.00144 * 1 2 3 31 31 H 1.09003 * 109.47063 * 60.00023 * 1 2 3 32 32 H 0.97001 * 119.99454 * 95.00746 * 4 2 1 33 33 H 0.97000 * 119.99555 * 0.02562 * 9 7 5 34 34 H 1.08994 * 109.46952 * 300.00262 * 10 9 7 35 35 H 1.08992 * 109.46844 * 60.00609 * 10 9 7 36 36 H 1.08994 * 109.47336 * 299.99647 * 11 10 9 37 37 H 1.08992 * 109.47300 * 60.00508 * 11 10 9 38 38 H 0.96999 * 119.99804 * 180.02562 * 15 14 12 39 39 H 1.08003 * 119.81710 * 359.84939 * 21 20 2 40 40 H 1.07993 * 119.87953 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.00816 * 180.55836 * 25 24 23 42 42 H 1.08996 * 110.93944 * 226.34277 * 26 24 23 43 43 H 1.08999 * 110.97148 * 102.66584 * 26 24 23 44 44 H 1.08992 * 110.74659 * 266.98367 * 27 26 24 45 45 H 1.09001 * 110.90349 * 143.71006 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8580 1.1591 2.4118 7 6 2.6393 -0.7242 3.5790 8 8 2.9279 -1.9016 3.5245 9 7 2.7627 -0.0532 4.7413 10 6 3.2458 -0.7452 5.9388 11 6 3.2913 0.2365 7.1115 12 6 3.7888 -0.4751 8.3432 13 1 4.0463 -1.5228 8.2946 14 6 3.9152 0.2113 9.5323 15 7 3.6011 1.4871 9.5916 16 14 4.5312 -0.6709 11.0592 17 1 4.8134 -2.0912 10.7303 18 1 5.7754 -0.0181 11.5400 19 1 3.4952 -0.6046 12.1211 20 6 2.0324 -0.7104 -1.2304 21 6 2.0679 -2.0923 -1.2680 22 6 2.5243 -2.7475 -2.3926 23 6 2.9548 -2.0219 -3.5009 24 6 2.9190 -0.6346 -3.4494 25 6 2.4544 0.0176 -2.3286 26 6 3.4527 -0.1268 -4.7749 27 6 4.1365 -1.3902 -5.3490 28 8 3.4261 -2.4590 -4.7010 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1526 33 1 2.5317 0.8879 4.7849 34 1 2.5723 -1.5675 6.1798 35 1 4.2459 -1.1369 5.7535 36 1 3.9646 1.0592 6.8708 37 1 2.2911 0.6279 7.2967 38 1 3.6904 1.9701 10.4280 39 1 1.7368 -2.6615 -0.4119 40 1 2.5483 -3.8270 -2.4137 41 1 2.4236 1.0969 -2.3056 42 1 4.1772 0.6731 -4.6224 43 1 2.6401 0.2042 -5.4216 44 1 5.1933 -1.4118 -5.0831 45 1 4.0109 -1.4430 -6.4305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335170053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:11 Heat of formation + Delta-G solvation = -86.374640 kcal Electronic energy + Delta-G solvation = -26928.675160 eV Core-core repulsion = 22911.213330 eV Total energy + Delta-G solvation = -4017.461830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55747 -40.52620 -38.86141 -37.93825 -35.63955 -34.88331 -33.11130 -32.87109 -31.67030 -29.83003 -29.70081 -29.11686 -25.89101 -24.57842 -23.82648 -23.13546 -22.41649 -21.12127 -20.68331 -20.16468 -18.45765 -17.81259 -17.31042 -16.70599 -16.57536 -16.18484 -15.83873 -15.69029 -15.22962 -14.70279 -14.52887 -14.47568 -14.38201 -13.77777 -13.70658 -13.61227 -13.44769 -13.38292 -13.01338 -12.88827 -12.60041 -12.33309 -12.23460 -12.12502 -11.53866 -11.48463 -11.23080 -11.20358 -11.09037 -11.07767 -10.65267 -10.40951 -9.79916 -9.46502 -9.43055 -9.29783 -9.19370 -8.69891 -8.47595 -8.42304 -6.10548 -4.14063 0.83060 0.91662 1.60784 2.50830 2.81919 3.25455 3.27820 3.35502 3.40093 3.42919 3.85161 3.94433 4.05683 4.32032 4.40267 4.43143 4.51422 4.67732 4.77012 4.84577 4.92104 4.99543 5.03166 5.16893 5.24023 5.26480 5.28745 5.37778 5.54645 5.64398 5.78668 5.93542 5.95520 5.99021 6.13645 6.18033 6.23851 6.25937 6.59509 6.69248 6.74443 7.04436 7.46573 7.57682 7.65985 7.87033 7.92059 8.20969 8.33905 8.91806 9.50902 11.00966 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026537 B = 0.001780 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.863986 B =15727.288213 C =16089.220849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.100 0.900 4 N -0.701 5.701 5 C 0.511 3.489 6 O -0.519 6.519 7 C 0.497 3.503 8 O -0.533 6.533 9 N -0.686 5.686 10 C 0.119 3.881 11 C 0.010 3.990 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.120 4.120 21 C -0.075 4.075 22 C -0.131 4.131 23 C 0.106 3.894 24 C -0.173 4.173 25 C -0.055 4.055 26 C -0.110 4.110 27 C 0.051 3.949 28 O -0.305 6.305 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.411 0.589 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -3.217 -31.291 31.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.084 3.916 3 H 0.118 0.882 4 N -0.356 5.356 5 C 0.292 3.708 6 O -0.394 6.394 7 C 0.276 3.724 8 O -0.411 6.411 9 N -0.337 5.337 10 C -0.003 4.003 11 C -0.027 4.027 12 C -0.561 4.561 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.150 4.150 23 C 0.061 3.939 24 C -0.174 4.174 25 C -0.073 4.073 26 C -0.147 4.147 27 C -0.024 4.024 28 O -0.219 6.219 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.246 0.754 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.459 -3.266 -31.244 31.604 hybrid contribution 0.396 -0.208 0.809 0.924 sum -3.063 -3.473 -30.435 30.785 Atomic orbital electron populations 1.22191 0.93673 1.02840 1.03067 1.19775 0.94485 0.96714 0.80657 0.88158 1.45931 1.66089 1.14983 1.08629 1.20466 0.78537 0.87020 0.84810 1.90754 1.48298 1.15398 1.84927 1.19964 0.80478 0.87182 0.84737 1.90728 1.49904 1.15361 1.85138 1.46233 1.63075 1.15107 1.09239 1.21936 0.98531 0.96890 0.82941 1.19365 0.98256 0.94282 0.90824 1.21054 1.44592 0.96696 0.93790 0.92104 1.25007 0.95287 0.94892 0.99134 1.69969 1.48116 1.08224 1.26738 0.86441 0.78459 0.79878 0.82685 1.19585 1.20935 1.20921 1.19720 1.02867 0.93793 0.95678 1.20695 0.97686 0.93656 0.97326 1.20236 1.03981 1.00326 0.90464 1.19604 0.95628 0.92256 0.86449 1.20714 1.06145 0.93802 0.96731 1.20094 0.96388 0.99917 0.90912 1.21798 1.00926 0.98729 0.93264 1.23850 0.96239 0.83899 0.98414 1.86837 1.68449 1.38515 1.28136 0.91962 0.91267 0.91181 0.75129 0.75376 0.91847 0.91856 0.95645 0.95634 0.92834 0.84875 0.85039 0.85323 0.88865 0.89039 0.90398 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.46 37.16 0.35 -1.01 16 2 C 0.19 1.78 2.78 -69.08 -0.19 1.59 16 3 H 0.10 1.02 7.45 -51.92 -0.39 0.63 16 4 N -0.70 -8.00 5.02 -55.36 -0.28 -8.28 16 5 C 0.51 7.48 7.85 -11.59 -0.09 7.39 16 6 O -0.52 -8.45 16.14 5.49 0.09 -8.37 16 7 C 0.50 8.48 7.89 -11.58 -0.09 8.39 16 8 O -0.53 -10.00 16.48 5.50 0.09 -9.91 16 9 N -0.69 -12.41 5.55 -60.73 -0.34 -12.75 16 10 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 11 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 12 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 16 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.12 -1.04 4.96 -104.56 -0.52 -1.55 16 21 C -0.08 -0.63 9.04 -39.68 -0.36 -0.99 16 22 C -0.13 -1.15 10.06 -39.30 -0.40 -1.54 16 23 C 0.11 0.99 7.04 -38.95 -0.27 0.72 16 24 C -0.17 -1.42 6.27 -104.10 -0.65 -2.07 16 25 C -0.05 -0.44 9.66 -39.72 -0.38 -0.83 16 26 C -0.11 -0.59 7.12 -26.52 -0.19 -0.78 16 27 C 0.05 0.28 8.01 38.06 0.30 0.58 16 28 O -0.31 -2.79 11.10 -20.16 -0.22 -3.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.41 4.33 6.35 -40.82 -0.26 4.07 16 33 H 0.41 7.07 7.94 -40.82 -0.32 6.75 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.13 0.93 6.91 -52.48 -0.36 0.57 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.82 8.04 -52.49 -0.42 0.40 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -32.52 384.21 -8.59 -41.11 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.37 Total: 5.17 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.07 Total: -0.67 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.12 Total: -46.33 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.52 -8.59 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335170053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.264 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds