Wall clock time and date at job start Tue Mar 31 2020 17:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 N 1.46500 * 109.46961 * 119.99594 * 2 1 3 5 5 C 1.34773 * 120.00432 * 275.00011 * 4 2 1 6 6 O 1.21353 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.49454 * 120.00135 * 179.72278 * 5 4 2 8 8 O 1.21343 * 119.99752 * 0.28157 * 7 5 4 9 9 N 1.34777 * 120.00164 * 180.27489 * 7 5 4 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46671 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46681 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00300 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00286 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99512 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00323 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47012 * 119.99855 * 16 14 12 19 19 H 1.48503 * 109.47163 * 240.00040 * 16 14 12 20 20 C 1.50700 * 109.47629 * 239.99941 * 2 1 3 21 21 C 1.38286 * 120.11849 * 280.00203 * 20 2 1 22 22 C 1.37926 * 120.35404 * 179.86571 * 21 20 2 23 23 C 1.39292 * 120.23908 * 0.05344 * 22 21 20 24 24 C 1.38877 * 118.87433 * 0.17932 * 23 22 21 25 25 C 1.37750 * 120.78778 * 359.38010 * 24 23 22 26 26 C 1.51642 * 107.03860 * 179.45500 * 24 23 22 27 27 C 1.54710 * 101.91652 * 344.49785 * 26 24 23 28 28 O 1.36132 * 129.88140 * 180.61094 * 23 22 21 29 29 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46936 * 300.00144 * 1 2 3 31 31 H 1.09003 * 109.47063 * 60.00023 * 1 2 3 32 32 H 0.97001 * 119.99454 * 95.00746 * 4 2 1 33 33 H 0.97000 * 119.99555 * 0.02562 * 9 7 5 34 34 H 1.08994 * 109.46952 * 300.00262 * 10 9 7 35 35 H 1.08992 * 109.46844 * 60.00609 * 10 9 7 36 36 H 1.08994 * 109.47336 * 299.99647 * 11 10 9 37 37 H 1.08992 * 109.47300 * 60.00508 * 11 10 9 38 38 H 0.96999 * 119.99804 * 180.02562 * 15 14 12 39 39 H 1.08003 * 119.81710 * 359.84939 * 21 20 2 40 40 H 1.07993 * 119.87953 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.00816 * 180.55836 * 25 24 23 42 42 H 1.08996 * 110.93944 * 226.34277 * 26 24 23 43 43 H 1.08999 * 110.97148 * 102.66584 * 26 24 23 44 44 H 1.08992 * 110.74659 * 266.98367 * 27 26 24 45 45 H 1.09001 * 110.90349 * 143.71006 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8580 1.1591 2.4118 7 6 2.6393 -0.7242 3.5790 8 8 2.9279 -1.9016 3.5245 9 7 2.7627 -0.0532 4.7413 10 6 3.2458 -0.7452 5.9388 11 6 3.2913 0.2365 7.1115 12 6 3.7888 -0.4751 8.3432 13 1 4.0463 -1.5228 8.2946 14 6 3.9152 0.2113 9.5323 15 7 3.6011 1.4871 9.5916 16 14 4.5312 -0.6709 11.0592 17 1 4.8134 -2.0912 10.7303 18 1 5.7754 -0.0181 11.5400 19 1 3.4952 -0.6046 12.1211 20 6 2.0324 -0.7104 -1.2304 21 6 2.0679 -2.0923 -1.2680 22 6 2.5243 -2.7475 -2.3926 23 6 2.9548 -2.0219 -3.5009 24 6 2.9190 -0.6346 -3.4494 25 6 2.4544 0.0176 -2.3286 26 6 3.4527 -0.1268 -4.7749 27 6 4.1365 -1.3902 -5.3490 28 8 3.4261 -2.4590 -4.7010 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1526 33 1 2.5317 0.8879 4.7849 34 1 2.5723 -1.5675 6.1798 35 1 4.2459 -1.1369 5.7535 36 1 3.9646 1.0592 6.8708 37 1 2.2911 0.6279 7.2967 38 1 3.6904 1.9701 10.4280 39 1 1.7368 -2.6615 -0.4119 40 1 2.5483 -3.8270 -2.4137 41 1 2.4236 1.0969 -2.3056 42 1 4.1772 0.6731 -4.6224 43 1 2.6401 0.2042 -5.4216 44 1 5.1933 -1.4118 -5.0831 45 1 4.0109 -1.4430 -6.4305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335170053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:10 Heat of formation + Delta-G solvation = -108.172547 kcal Electronic energy + Delta-G solvation = -26929.620388 eV Core-core repulsion = 22911.213330 eV Total energy + Delta-G solvation = -4018.407058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.17292 -41.70770 -39.96199 -38.89983 -36.93716 -36.17291 -34.82486 -33.63768 -32.54899 -31.68156 -30.27276 -29.76390 -27.50464 -25.81874 -24.53259 -24.13772 -22.97346 -22.84193 -21.68039 -21.23101 -19.72556 -18.58856 -18.38448 -18.08983 -17.49671 -17.14957 -17.05221 -16.66352 -16.44482 -16.39628 -15.82941 -15.65469 -15.11014 -14.96769 -14.75360 -14.37635 -14.31503 -14.24465 -14.12890 -13.88286 -13.53840 -13.35702 -13.24853 -12.96210 -12.91513 -12.71761 -12.64447 -12.50852 -12.29240 -12.18608 -11.77070 -11.68457 -11.67983 -11.41383 -10.71011 -10.61981 -10.43269 -10.19876 -9.90644 -9.10367 -8.23359 -6.34332 0.18548 0.28694 0.32770 1.31367 1.42585 1.44031 1.56818 2.11596 2.29034 2.39914 2.58820 2.72777 3.11711 3.37760 3.42118 3.53379 3.73355 3.92199 4.05077 4.15404 4.20403 4.30606 4.37496 4.39348 4.45692 4.54256 4.64035 4.67512 4.81715 4.84226 4.86068 4.88237 5.02616 5.08261 5.14913 5.17444 5.25005 5.35051 5.42598 5.48366 5.55451 5.57978 5.76020 5.92466 6.13312 6.16151 6.34779 6.69464 6.80007 6.92335 7.35213 8.88829 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026537 B = 0.001780 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.863986 B =15727.288213 C =16089.220849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.190 3.810 3 H 0.097 0.903 4 N -0.685 5.685 5 C 0.518 3.482 6 O -0.537 6.537 7 C 0.499 3.501 8 O -0.549 6.549 9 N -0.688 5.688 10 C 0.138 3.862 11 C 0.018 3.982 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.125 4.125 21 C -0.080 4.080 22 C -0.144 4.144 23 C 0.087 3.913 24 C -0.180 4.180 25 C -0.059 4.059 26 C -0.107 4.107 27 C 0.044 3.956 28 O -0.326 6.326 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.417 0.583 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.265 0.735 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 -3.670 -32.552 32.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.086 3.914 3 H 0.115 0.885 4 N -0.339 5.339 5 C 0.299 3.701 6 O -0.413 6.413 7 C 0.280 3.720 8 O -0.428 6.428 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.020 4.020 12 C -0.582 4.582 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.126 4.126 21 C -0.098 4.098 22 C -0.162 4.162 23 C 0.042 3.958 24 C -0.181 4.181 25 C -0.077 4.077 26 C -0.144 4.144 27 C -0.030 4.030 28 O -0.241 6.241 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.255 0.745 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.277 -3.737 -32.554 32.932 hybrid contribution 0.339 -0.081 1.077 1.132 sum -2.938 -3.818 -31.477 31.844 Atomic orbital electron populations 1.22161 0.92722 1.03320 1.03157 1.19890 0.95148 0.96363 0.79954 0.88510 1.45942 1.64567 1.15176 1.08193 1.19922 0.78836 0.86619 0.84769 1.90757 1.49543 1.15945 1.85094 1.20349 0.79637 0.86954 0.85061 1.90717 1.50435 1.16114 1.85488 1.46066 1.63515 1.15305 1.09039 1.21478 0.98543 0.95713 0.82763 1.19187 0.96558 0.94382 0.91863 1.21482 1.44603 0.97140 0.94994 0.91720 1.25917 0.95396 0.95625 1.02490 1.70083 1.49153 1.09734 1.27753 0.85352 0.77917 0.78964 0.78528 1.18638 1.20412 1.20380 1.19655 1.03542 0.93896 0.95461 1.20819 0.97641 0.93725 0.97603 1.20427 1.04197 1.00921 0.90685 1.19887 0.96077 0.93052 0.86766 1.21059 1.05630 0.93610 0.97793 1.20301 0.95951 1.00811 0.90669 1.21888 1.01587 0.99027 0.91876 1.24141 0.96297 0.83027 0.99553 1.86806 1.68886 1.40210 1.28190 0.91308 0.92808 0.89417 0.74468 0.74881 0.91981 0.92057 0.97370 0.97321 0.92588 0.83908 0.84338 0.83712 0.87301 0.87850 0.89788 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.46 71.98 0.68 -1.75 16 2 C 0.19 3.34 2.78 44.24 0.12 3.46 16 3 H 0.10 1.83 7.45 -2.38 -0.02 1.81 16 4 N -0.68 -14.86 5.02 -447.42 -2.25 -17.11 16 5 C 0.52 14.82 7.85 87.27 0.69 15.50 16 6 O -0.54 -17.19 16.14 -3.26 -0.05 -17.24 16 7 C 0.50 16.80 7.89 87.27 0.69 17.49 16 8 O -0.55 -20.19 16.48 -3.23 -0.05 -20.24 16 9 N -0.69 -24.96 5.55 -464.43 -2.58 -27.53 16 10 C 0.14 5.76 5.61 86.38 0.48 6.25 16 11 C 0.02 0.89 5.09 29.85 0.15 1.04 16 12 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 13 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 14 C 0.00 0.25 5.46 84.66 0.46 0.71 16 15 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 16 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 C -0.12 -1.98 4.96 -19.83 -0.10 -2.08 16 21 C -0.08 -1.25 9.04 22.21 0.20 -1.05 16 22 C -0.14 -2.42 10.06 22.45 0.23 -2.20 16 23 C 0.09 1.56 7.04 22.68 0.16 1.72 16 24 C -0.18 -2.68 6.27 -19.53 -0.12 -2.81 16 25 C -0.06 -0.86 9.66 22.18 0.21 -0.64 16 26 C -0.11 -0.92 7.12 30.73 0.22 -0.70 16 27 C 0.04 0.40 8.01 72.57 0.58 0.98 16 28 O -0.33 -5.67 11.10 -95.05 -1.06 -6.72 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.42 8.26 6.35 -92.71 -0.59 7.67 16 33 H 0.41 14.45 7.94 -92.71 -0.74 13.71 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.14 1.84 6.91 -2.91 -0.02 1.82 16 40 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.15 1.55 8.04 -2.91 -0.02 1.53 16 42 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 45 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -68.97 384.21 0.92 -68.04 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.30 Total: 23.64 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.89 Total: 6.17 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -4.54 Total: -99.05 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.16 Total: -44.20 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.97 0.92 -68.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335170053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.129 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds