Wall clock time and date at job start Tue Mar 31 2020 17:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.80622 * 2 1 4 4 C 1.54999 * 110.94021 * 236.35588 * 2 1 3 5 5 O 1.44375 * 103.49139 * 204.76640 * 4 2 1 6 6 C 1.43743 * 106.97778 * 40.05759 * 5 4 2 7 7 C 1.54101 * 107.29207 * 333.48569 * 6 5 4 8 8 H 1.09004 * 110.48762 * 120.70867 * 7 6 5 9 9 N 1.46501 * 110.49031 * 243.22154 * 7 6 5 10 10 C 1.34776 * 119.99830 * 273.55130 * 9 7 6 11 11 O 1.21363 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.49353 * 120.00095 * 180.02562 * 10 9 7 13 13 O 1.21378 * 119.99620 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00496 * 180.02562 * 12 10 9 15 15 C 1.39715 * 120.00136 * 175.37755 * 14 12 10 16 16 C 1.38929 * 120.07342 * 214.81285 * 15 14 12 17 17 C 1.38099 * 119.92210 * 179.77068 * 16 15 14 18 18 C 1.38289 * 120.07712 * 0.50675 * 17 16 15 19 19 C 1.50700 * 119.92810 * 179.72607 * 18 17 16 20 20 C 1.50706 * 109.47080 * 270.02599 * 19 18 17 21 21 H 1.08008 * 119.99966 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00183 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99943 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00147 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47118 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47359 * 119.99604 * 24 22 20 27 27 H 1.48501 * 109.47009 * 239.99932 * 24 22 20 28 28 C 1.38295 * 120.15089 * 359.74998 * 18 17 16 29 29 C 1.38093 * 120.07861 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47056 * 296.37218 * 1 2 3 31 31 H 1.09007 * 109.47264 * 56.36559 * 1 2 3 32 32 H 1.08997 * 109.47361 * 176.36893 * 1 2 3 33 33 H 1.09003 * 110.61362 * 323.26221 * 4 2 1 34 34 H 1.08998 * 110.62016 * 86.26141 * 4 2 1 35 35 H 1.09004 * 109.87741 * 214.06665 * 6 5 4 36 36 H 1.08995 * 109.88314 * 92.91311 * 6 5 4 37 37 H 0.96992 * 119.99919 * 93.54196 * 9 7 6 38 38 H 0.97003 * 119.99634 * 355.37277 * 14 12 10 39 39 H 1.07999 * 120.04050 * 0.02838 * 16 15 14 40 40 H 1.07999 * 119.96246 * 180.23845 * 17 16 15 41 41 H 1.09004 * 109.47330 * 30.01896 * 19 18 17 42 42 H 1.08997 * 109.47361 * 150.02522 * 19 18 17 43 43 H 0.97003 * 119.99979 * 180.02562 * 23 22 20 44 44 H 1.08004 * 119.96011 * 179.97438 * 28 18 17 45 45 H 1.07996 * 120.03869 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0839 -0.8020 -1.2051 5 8 3.3948 -1.2135 -0.7619 6 6 3.2723 -1.5874 0.6206 7 6 2.0824 -0.8009 1.2041 8 1 1.3248 -1.4843 1.5877 9 7 2.5361 0.1057 2.2617 10 6 2.6459 -0.3390 3.5292 11 8 2.3685 -1.4904 3.7946 12 6 3.1078 0.5853 4.6076 13 8 3.3847 1.7369 4.3423 14 7 3.2181 0.1406 5.8750 15 6 3.7414 0.9757 6.8654 16 6 4.5129 0.4418 7.8901 17 6 5.0325 1.2708 8.8647 18 6 4.7769 2.6294 8.8275 19 6 5.3405 3.5300 9.8962 20 6 4.3600 3.6314 11.0362 21 1 3.4222 3.0974 10.9910 22 6 4.6599 4.4058 12.1367 23 7 5.8019 5.0557 12.1919 24 14 3.4448 4.5309 13.5500 25 1 2.2450 3.7106 13.2453 26 1 4.0816 4.0335 14.7959 27 1 3.0414 5.9484 13.7320 28 6 4.0049 3.1634 7.8119 29 6 3.4869 2.3411 6.8308 30 1 -0.3633 0.4565 0.9207 31 1 -0.3634 0.5692 -0.8557 32 1 -0.3634 -1.0256 -0.0651 33 1 1.4574 -1.6705 -1.4087 34 1 2.1589 -0.1664 -2.0874 35 1 4.1857 -1.3293 1.1567 36 1 3.0836 -2.6579 0.6998 37 1 2.7575 1.0259 2.0497 38 1 2.9341 -0.7594 6.0997 39 1 4.7095 -0.6196 7.9221 40 1 5.6355 0.8570 9.6594 41 1 6.2806 3.1164 10.2614 42 1 5.5172 4.5216 9.4797 43 1 6.0131 5.6002 12.9664 44 1 3.8069 4.2248 7.7860 45 1 2.8838 2.7587 6.0383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337618332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:34 Heat of formation + Delta-G solvation = -92.087052 kcal Electronic energy + Delta-G solvation = -27140.876002 eV Core-core repulsion = 23123.166463 eV Total energy + Delta-G solvation = -4017.709539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30466 -40.26758 -39.05833 -38.01978 -35.68460 -34.86979 -33.32995 -33.03215 -30.63925 -30.39717 -29.51233 -27.15732 -26.79654 -25.14469 -23.41979 -22.54766 -22.39032 -21.40697 -20.68291 -20.09255 -18.85329 -17.74960 -17.05209 -16.64557 -16.48776 -16.31751 -15.98296 -15.88198 -15.17324 -14.99779 -14.58486 -14.39035 -14.26196 -13.86699 -13.82335 -13.61087 -13.15338 -12.94174 -12.92222 -12.64615 -12.49755 -12.14259 -12.03409 -11.87929 -11.55846 -11.45728 -11.40955 -11.31764 -10.88001 -10.60835 -10.43703 -10.35101 -10.10966 -9.84719 -9.65920 -9.47111 -9.32799 -8.45142 -8.37460 -7.52419 -6.06092 -4.10255 0.99557 1.86893 1.97279 2.10121 2.95588 3.27390 3.28103 3.35900 3.40714 3.41272 3.75231 4.14335 4.16884 4.29570 4.34286 4.45408 4.50876 4.68182 4.78096 5.00364 5.12207 5.13096 5.20122 5.27942 5.33631 5.35747 5.40748 5.47681 5.57056 5.76841 5.79934 5.93115 5.99433 6.11632 6.25949 6.49716 6.56702 6.71772 6.77056 7.08638 7.12252 7.20698 7.43034 7.47641 7.60724 7.81057 7.82289 7.89676 8.29144 8.95286 9.53777 11.03568 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.001862 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.122277 B =15033.192763 C =15185.828015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.051 3.949 5 O -0.373 6.373 6 C 0.036 3.964 7 C 0.113 3.887 8 H 0.110 0.890 9 N -0.693 5.693 10 C 0.514 3.486 11 O -0.517 6.517 12 C 0.501 3.499 13 O -0.502 6.502 14 N -0.632 5.632 15 C 0.091 3.909 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.035 4.035 19 C 0.046 3.954 20 C -0.511 4.511 21 H 0.058 0.942 22 C 0.058 3.942 23 N -0.893 5.893 24 Si 0.895 3.105 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 C -0.110 4.110 29 C -0.113 4.113 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.416 0.584 38 H 0.418 0.582 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.124 0.876 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 -12.889 -25.552 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 H 0.115 0.885 4 C -0.026 4.026 5 O -0.292 6.292 6 C -0.042 4.042 7 C 0.008 3.992 8 H 0.128 0.872 9 N -0.347 5.347 10 C 0.294 3.706 11 O -0.392 6.392 12 C 0.282 3.718 13 O -0.376 6.376 14 N -0.278 5.278 15 C 0.000 4.000 16 C -0.154 4.154 17 C -0.127 4.127 18 C -0.036 4.036 19 C 0.009 3.991 20 C -0.550 4.550 21 H 0.076 0.924 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.723 3.277 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.129 4.129 29 C -0.133 4.133 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.255 0.745 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.142 0.858 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.848 -12.816 -25.605 29.969 hybrid contribution -0.824 0.080 1.042 1.331 sum -9.672 -12.736 -24.564 29.311 Atomic orbital electron populations 1.21740 0.92762 1.02694 1.02924 1.23036 0.97592 1.00764 0.93883 0.88549 1.23652 0.84294 0.97765 0.96852 1.88933 1.28906 1.86425 1.24922 1.23662 0.99005 0.98990 0.82569 1.22599 0.96903 0.92227 0.87433 0.87241 1.45783 1.66511 1.15934 1.06474 1.20161 0.78660 0.87828 0.83909 1.90780 1.47834 1.18090 1.82462 1.20013 0.80029 0.87989 0.83744 1.90796 1.47204 1.17529 1.82086 1.42984 1.60376 1.18028 1.06414 1.17519 1.00837 0.90572 0.91122 1.20798 0.98952 0.99625 0.95997 1.20917 1.00520 0.93331 0.97978 1.20791 0.93565 0.94628 0.94594 1.18386 0.96332 0.93561 0.90797 1.21093 1.03402 1.28860 1.01596 0.92366 1.25019 0.95446 0.95465 0.98457 1.69967 1.22447 1.30753 1.30066 0.86479 0.81280 0.77860 0.82090 1.19667 1.20942 1.20948 1.21025 0.98060 0.99909 0.93868 1.21115 1.00862 0.91845 0.99470 0.91742 0.91551 0.91927 0.91487 0.88290 0.89130 0.90991 0.74636 0.74538 0.86452 0.85721 0.95181 0.95172 0.92871 0.85847 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 9.19 37.15 0.34 -0.22 16 2 C -0.13 -0.66 3.44 -88.62 -0.30 -0.96 16 3 H 0.10 0.46 7.76 -51.93 -0.40 0.05 16 4 C 0.05 0.27 7.18 38.21 0.27 0.54 16 5 O -0.37 -3.16 11.52 -35.23 -0.41 -3.56 16 6 C 0.04 0.28 7.50 37.73 0.28 0.56 16 7 C 0.11 0.78 2.92 -66.40 -0.19 0.58 16 8 H 0.11 0.78 7.38 -51.93 -0.38 0.40 16 9 N -0.69 -5.71 5.04 -52.79 -0.27 -5.97 16 10 C 0.51 5.54 7.88 -11.63 -0.09 5.45 16 11 O -0.52 -6.31 16.19 5.49 0.09 -6.22 16 12 C 0.50 6.45 7.73 -11.63 -0.09 6.36 16 13 O -0.50 -7.50 13.91 5.47 0.08 -7.43 16 14 N -0.63 -8.25 5.32 -10.30 -0.05 -8.30 16 15 C 0.09 1.47 6.30 -83.75 -0.53 0.94 16 16 C -0.13 -2.14 9.97 -39.38 -0.39 -2.53 16 17 C -0.11 -2.04 9.69 -39.61 -0.38 -2.43 16 18 C -0.04 -0.76 5.07 -104.58 -0.53 -1.29 16 19 C 0.05 1.17 5.10 -29.03 -0.15 1.02 16 20 C -0.51 -14.12 9.09 -34.44 -0.31 -14.43 16 21 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 24 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 29 C -0.11 -2.00 8.69 -39.38 -0.34 -2.34 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.07 0.28 8.01 -51.93 -0.42 -0.14 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.42 3.11 7.83 -40.82 -0.32 2.79 16 38 H 0.42 4.54 8.30 -40.82 -0.34 4.20 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 41 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 45 H 0.13 2.19 6.22 -52.49 -0.33 1.86 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -32.14 381.51 -8.36 -40.50 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.36 Total: 4.12 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -2.90 Total: -9.79 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.42 Total: -39.70 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.24 Total: -17.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.14 -8.36 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.589 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds