Wall clock time and date at job start Tue Mar 31 2020 17:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.80622 * 2 1 4 4 C 1.54999 * 110.94021 * 236.35588 * 2 1 3 5 5 O 1.44375 * 103.49139 * 204.76640 * 4 2 1 6 6 C 1.43743 * 106.97778 * 40.05759 * 5 4 2 7 7 C 1.54101 * 107.29207 * 333.48569 * 6 5 4 8 8 H 1.09004 * 110.48762 * 120.70867 * 7 6 5 9 9 N 1.46501 * 110.49031 * 243.22154 * 7 6 5 10 10 C 1.34776 * 119.99830 * 273.55130 * 9 7 6 11 11 O 1.21363 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.49353 * 120.00095 * 180.02562 * 10 9 7 13 13 O 1.21378 * 119.99620 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00496 * 180.02562 * 12 10 9 15 15 C 1.39715 * 120.00136 * 175.37755 * 14 12 10 16 16 C 1.38929 * 120.07342 * 214.81285 * 15 14 12 17 17 C 1.38099 * 119.92210 * 179.77068 * 16 15 14 18 18 C 1.38289 * 120.07712 * 0.50675 * 17 16 15 19 19 C 1.50700 * 119.92810 * 179.72607 * 18 17 16 20 20 C 1.50706 * 109.47080 * 270.02599 * 19 18 17 21 21 H 1.08008 * 119.99966 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00183 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99943 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00147 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47118 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47359 * 119.99604 * 24 22 20 27 27 H 1.48501 * 109.47009 * 239.99932 * 24 22 20 28 28 C 1.38295 * 120.15089 * 359.74998 * 18 17 16 29 29 C 1.38093 * 120.07861 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47056 * 296.37218 * 1 2 3 31 31 H 1.09007 * 109.47264 * 56.36559 * 1 2 3 32 32 H 1.08997 * 109.47361 * 176.36893 * 1 2 3 33 33 H 1.09003 * 110.61362 * 323.26221 * 4 2 1 34 34 H 1.08998 * 110.62016 * 86.26141 * 4 2 1 35 35 H 1.09004 * 109.87741 * 214.06665 * 6 5 4 36 36 H 1.08995 * 109.88314 * 92.91311 * 6 5 4 37 37 H 0.96992 * 119.99919 * 93.54196 * 9 7 6 38 38 H 0.97003 * 119.99634 * 355.37277 * 14 12 10 39 39 H 1.07999 * 120.04050 * 0.02838 * 16 15 14 40 40 H 1.07999 * 119.96246 * 180.23845 * 17 16 15 41 41 H 1.09004 * 109.47330 * 30.01896 * 19 18 17 42 42 H 1.08997 * 109.47361 * 150.02522 * 19 18 17 43 43 H 0.97003 * 119.99979 * 180.02562 * 23 22 20 44 44 H 1.08004 * 119.96011 * 179.97438 * 28 18 17 45 45 H 1.07996 * 120.03869 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0839 -0.8020 -1.2051 5 8 3.3948 -1.2135 -0.7619 6 6 3.2723 -1.5874 0.6206 7 6 2.0824 -0.8009 1.2041 8 1 1.3248 -1.4843 1.5877 9 7 2.5361 0.1057 2.2617 10 6 2.6459 -0.3390 3.5292 11 8 2.3685 -1.4904 3.7946 12 6 3.1078 0.5853 4.6076 13 8 3.3847 1.7369 4.3423 14 7 3.2181 0.1406 5.8750 15 6 3.7414 0.9757 6.8654 16 6 4.5129 0.4418 7.8901 17 6 5.0325 1.2708 8.8647 18 6 4.7769 2.6294 8.8275 19 6 5.3405 3.5300 9.8962 20 6 4.3600 3.6314 11.0362 21 1 3.4222 3.0974 10.9910 22 6 4.6599 4.4058 12.1367 23 7 5.8019 5.0557 12.1919 24 14 3.4448 4.5309 13.5500 25 1 2.2450 3.7106 13.2453 26 1 4.0816 4.0335 14.7959 27 1 3.0414 5.9484 13.7320 28 6 4.0049 3.1634 7.8119 29 6 3.4869 2.3411 6.8308 30 1 -0.3633 0.4565 0.9207 31 1 -0.3634 0.5692 -0.8557 32 1 -0.3634 -1.0256 -0.0651 33 1 1.4574 -1.6705 -1.4087 34 1 2.1589 -0.1664 -2.0874 35 1 4.1857 -1.3293 1.1567 36 1 3.0836 -2.6579 0.6998 37 1 2.7575 1.0259 2.0497 38 1 2.9341 -0.7594 6.0997 39 1 4.7095 -0.6196 7.9221 40 1 5.6355 0.8570 9.6594 41 1 6.2806 3.1164 10.2614 42 1 5.5172 4.5216 9.4797 43 1 6.0131 5.6002 12.9664 44 1 3.8069 4.2248 7.7860 45 1 2.8838 2.7587 6.0383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337618332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:33 Heat of formation + Delta-G solvation = -113.860297 kcal Electronic energy + Delta-G solvation = -27141.820161 eV Core-core repulsion = 23123.166463 eV Total energy + Delta-G solvation = -4018.653698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25086 -41.08622 -40.04971 -39.21299 -36.73089 -35.86899 -34.98184 -33.82247 -32.32007 -31.83026 -30.17216 -28.75335 -27.23676 -26.35683 -24.85229 -23.91577 -23.36223 -21.99538 -21.95017 -21.21024 -19.80211 -18.65460 -18.50156 -17.95054 -17.54083 -17.24349 -16.86539 -16.75364 -16.49898 -15.99072 -15.94914 -15.72684 -15.14209 -14.96810 -14.62725 -14.52381 -14.32874 -14.24632 -14.10611 -13.71487 -13.42242 -13.30725 -13.20963 -12.97181 -12.91844 -12.63934 -12.48848 -12.41525 -12.06185 -11.96327 -11.85416 -11.65124 -11.52671 -11.12912 -10.91359 -10.75922 -10.60303 -10.32592 -9.80688 -9.00262 -8.18785 -6.32620 -0.05216 0.53330 0.60484 1.10669 1.40150 1.40896 1.54161 1.96711 2.40222 2.41431 2.89202 2.94558 3.11407 3.19652 3.31712 3.70227 3.83433 3.97646 4.01657 4.10454 4.21431 4.35662 4.40581 4.52104 4.54514 4.58366 4.63305 4.66978 4.69221 4.81353 4.91989 4.99755 5.09332 5.17884 5.24919 5.27705 5.30990 5.37717 5.38467 5.54197 5.72154 5.75676 5.83927 6.05469 6.07482 6.19656 6.22175 6.58186 6.77527 6.80414 7.35948 8.89893 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.001862 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.122277 B =15033.192763 C =15185.828015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 H 0.099 0.901 4 C 0.047 3.953 5 O -0.396 6.396 6 C 0.036 3.964 7 C 0.112 3.888 8 H 0.111 0.889 9 N -0.679 5.679 10 C 0.522 3.478 11 O -0.530 6.530 12 C 0.503 3.497 13 O -0.522 6.522 14 N -0.626 5.626 15 C 0.106 3.894 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.068 4.068 19 C 0.055 3.945 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.966 3.034 25 H -0.265 1.265 26 H -0.276 1.276 27 H -0.278 1.278 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.421 0.579 38 H 0.431 0.569 39 H 0.158 0.842 40 H 0.128 0.872 41 H 0.008 0.992 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.116 0.884 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 -14.681 -26.913 32.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 H 0.118 0.882 4 C -0.029 4.029 5 O -0.315 6.315 6 C -0.042 4.042 7 C 0.008 3.992 8 H 0.129 0.871 9 N -0.333 5.333 10 C 0.302 3.698 11 O -0.406 6.406 12 C 0.285 3.715 13 O -0.398 6.398 14 N -0.273 5.273 15 C 0.013 3.987 16 C -0.140 4.140 17 C -0.132 4.132 18 C -0.068 4.068 19 C 0.018 3.982 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.195 4.195 23 N -0.570 5.570 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.204 1.204 28 C -0.138 4.138 29 C -0.136 4.136 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.259 0.741 38 H 0.271 0.729 39 H 0.175 0.825 40 H 0.146 0.854 41 H 0.026 0.974 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.727 -14.625 -27.006 32.531 hybrid contribution -0.242 0.592 1.289 1.439 sum -10.969 -14.033 -25.716 31.282 Atomic orbital electron populations 1.21733 0.91736 1.03269 1.03112 1.23020 0.98289 1.00535 0.92643 0.88246 1.23865 0.83182 0.98565 0.97258 1.88911 1.30840 1.86662 1.25101 1.23627 0.98677 0.99387 0.82505 1.22737 0.96661 0.92304 0.87493 0.87127 1.45791 1.65236 1.16374 1.05893 1.19699 0.78870 0.87115 0.84088 1.90785 1.48867 1.18327 1.82653 1.20411 0.79117 0.87943 0.83998 1.90794 1.47915 1.18634 1.82442 1.42917 1.60156 1.18257 1.05974 1.17580 0.99457 0.90310 0.91310 1.21062 0.97328 1.01173 0.94450 1.20988 1.00784 0.92470 0.98984 1.20483 0.96091 0.95423 0.94820 1.18122 0.95346 0.93020 0.91693 1.21412 1.03650 1.28768 1.02556 0.92571 1.25932 0.97285 0.95012 1.01277 1.70089 1.24324 1.31533 1.31074 0.85385 0.78967 0.78041 0.78589 1.18864 1.20144 1.20369 1.20968 0.98501 1.00026 0.94319 1.21154 1.00870 0.92616 0.98947 0.92447 0.90323 0.91343 0.90219 0.86903 0.90337 0.90498 0.74082 0.72920 0.82477 0.85374 0.97387 0.97928 0.92602 0.86591 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.19 71.98 0.66 -0.09 16 2 C -0.13 -0.96 3.44 -9.50 -0.03 -0.99 16 3 H 0.10 0.72 7.76 -2.39 -0.02 0.70 16 4 C 0.05 0.39 7.18 72.67 0.52 0.91 16 5 O -0.40 -6.12 11.52 -148.98 -1.72 -7.84 16 6 C 0.04 0.51 7.50 72.35 0.54 1.05 16 7 C 0.11 1.33 2.92 45.98 0.13 1.47 16 8 H 0.11 1.35 7.38 -2.39 -0.02 1.33 16 9 N -0.68 -9.99 5.04 -439.27 -2.22 -12.20 16 10 C 0.52 10.24 7.88 87.24 0.69 10.93 16 11 O -0.53 -11.79 16.19 -3.29 -0.05 -11.84 16 12 C 0.50 11.97 7.73 87.24 0.67 12.64 16 13 O -0.52 -14.86 13.91 -3.34 -0.05 -14.91 16 14 N -0.63 -14.76 5.32 -304.84 -1.62 -16.38 16 15 C 0.11 3.21 6.30 38.22 0.24 3.45 16 16 C -0.12 -3.57 9.97 22.40 0.22 -3.35 16 17 C -0.11 -4.23 9.69 22.25 0.22 -4.01 16 18 C -0.07 -2.98 5.07 -19.84 -0.10 -3.08 16 19 C 0.06 2.95 5.10 29.10 0.15 3.10 16 20 C -0.53 -29.90 9.09 25.60 0.23 -29.67 16 21 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 22 C 0.00 0.17 5.46 84.65 0.46 0.63 16 23 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 24 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 C -0.12 -4.82 9.69 22.25 0.22 -4.60 16 29 C -0.12 -4.03 8.69 22.40 0.19 -3.83 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.07 0.30 8.09 -2.39 -0.02 0.28 16 33 H 0.08 0.45 8.01 -2.39 -0.02 0.43 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 1.27 7.93 -2.38 -0.02 1.25 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.42 5.57 7.83 -92.71 -0.73 4.85 16 38 H 0.43 8.03 8.30 -92.71 -0.77 7.26 16 39 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.01 0.44 8.08 -2.38 -0.02 0.42 16 42 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 43 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.14 4.49 6.22 -2.91 -0.02 4.47 16 Total: -1.00 -70.34 381.51 1.21 -69.13 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.47 Total: 19.00 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 5.02 Total: -15.45 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -3.55 Total: -84.30 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.82 Total: -34.60 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.34 1.21 -69.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.731 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds