Wall clock time and date at job start Tue Mar 31 2020 17:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.82492 * 2 1 4 4 C 1.54996 * 110.90764 * 123.64362 * 2 1 3 5 5 O 1.44388 * 103.48639 * 155.22019 * 4 2 1 6 6 C 1.43736 * 106.97508 * 319.94168 * 5 4 2 7 7 C 1.54098 * 107.29879 * 26.51293 * 6 5 4 8 8 H 1.08997 * 110.49221 * 239.16052 * 7 6 5 9 9 N 1.46501 * 110.48845 * 116.64160 * 7 6 5 10 10 C 1.34783 * 119.99785 * 86.45965 * 9 7 6 11 11 O 1.21362 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.49348 * 119.99932 * 179.97438 * 10 9 7 13 13 O 1.21375 * 120.00201 * 0.02562 * 12 10 9 14 14 N 1.34782 * 119.99914 * 179.97438 * 12 10 9 15 15 C 1.39721 * 120.00003 * 185.27860 * 14 12 10 16 16 C 1.38929 * 120.07657 * 213.34582 * 15 14 12 17 17 C 1.38098 * 119.92519 * 179.97438 * 16 15 14 18 18 C 1.38289 * 120.07540 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.92204 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47338 * 89.99591 * 19 18 17 21 21 H 1.08001 * 120.00131 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99839 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00290 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47247 * 89.99707 * 24 22 20 26 26 H 1.48498 * 109.47636 * 209.99956 * 24 22 20 27 27 H 1.48503 * 109.46885 * 330.00052 * 24 22 20 28 28 C 1.38290 * 120.15204 * 0.26991 * 18 17 16 29 29 C 1.38100 * 120.07668 * 359.49630 * 28 18 17 30 30 H 1.09006 * 109.46887 * 183.65002 * 1 2 3 31 31 H 1.09004 * 109.46886 * 303.64572 * 1 2 3 32 32 H 1.09001 * 109.47530 * 63.64634 * 1 2 3 33 33 H 1.09003 * 110.61533 * 36.72732 * 4 2 1 34 34 H 1.08992 * 110.75316 * 273.78946 * 4 2 1 35 35 H 1.09004 * 109.87789 * 267.08475 * 6 5 4 36 36 H 1.09005 * 110.00154 * 146.00844 * 6 5 4 37 37 H 0.96999 * 120.00084 * 266.45259 * 9 7 6 38 38 H 0.97001 * 119.99869 * 5.27726 * 14 12 10 39 39 H 1.08004 * 120.03535 * 359.96009 * 16 15 14 40 40 H 1.08002 * 119.96115 * 180.02562 * 17 16 15 41 41 H 1.08999 * 109.46960 * 209.99728 * 19 18 17 42 42 H 1.08998 * 109.46912 * 329.99612 * 19 18 17 43 43 H 0.97001 * 119.99850 * 180.02562 * 23 22 20 44 44 H 1.08000 * 119.96183 * 179.72336 * 28 18 17 45 45 H 1.08000 * 120.03538 * 180.25309 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9175 1.0188 0.0000 4 6 2.0831 -0.8022 1.2054 5 8 3.3942 -1.2143 0.7625 6 6 3.2718 -1.5882 -0.6200 7 6 2.0824 -0.8013 -1.2039 8 1 1.3256 -1.4843 -1.5897 9 7 2.5373 0.1073 -2.2592 10 6 2.6490 -0.3352 -3.5275 11 8 2.3733 -1.4864 -3.7950 12 6 3.1122 0.5912 -4.6035 13 8 3.3884 1.7424 -4.3358 14 7 3.2245 0.1486 -5.8716 15 6 3.7616 0.9808 -6.8570 16 6 3.2985 0.9005 -8.1644 17 6 3.8313 1.7250 -9.1358 18 6 4.8242 2.6301 -8.8083 19 6 5.4027 3.5285 -9.8710 20 6 4.6075 4.8069 -9.9355 21 1 3.7674 4.9544 -9.2730 22 6 4.9530 5.7888 -10.8397 23 7 5.9769 5.6099 -11.6454 24 14 3.9677 7.3739 -10.9192 25 1 4.5571 8.3703 -9.9892 26 1 4.0014 7.9088 -12.3041 27 1 2.5612 7.1026 -10.5275 28 6 5.2910 2.7092 -7.5090 29 6 4.7593 1.8911 -6.5316 30 1 -0.3633 -1.0256 0.0654 31 1 -0.3633 0.5694 0.8555 32 1 -0.3634 0.4562 -0.9208 33 1 1.4562 -1.6704 1.4088 34 1 2.1580 -0.1687 2.0892 35 1 3.0826 -2.6588 -0.6991 36 1 4.1850 -1.3327 -1.1576 37 1 2.7579 1.0273 -2.0453 38 1 2.9324 -0.7477 -6.1001 39 1 2.5230 0.1940 -8.4208 40 1 3.4715 1.6633 -10.1522 41 1 6.4401 3.7578 -9.6276 42 1 5.3589 3.0243 -10.8363 43 1 6.2202 6.3008 -12.2813 44 1 6.0697 3.4141 -7.2576 45 1 5.1215 1.9563 -5.5162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337618335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:38 Heat of formation + Delta-G solvation = -92.362864 kcal Electronic energy + Delta-G solvation = -27202.555442 eV Core-core repulsion = 23184.833943 eV Total energy + Delta-G solvation = -4017.721499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29825 -40.25967 -39.05377 -38.01962 -35.67945 -34.86681 -33.32012 -33.02296 -30.63282 -30.40666 -29.50780 -27.14948 -26.78789 -25.14687 -23.41554 -22.56647 -22.38494 -21.40140 -20.67803 -20.06391 -18.85008 -17.74184 -17.08866 -16.63263 -16.45823 -16.31061 -15.95404 -15.89258 -15.14934 -15.00537 -14.58651 -14.34321 -14.25964 -13.86555 -13.82072 -13.61952 -13.14855 -12.96257 -12.89338 -12.63434 -12.49003 -12.10890 -12.04814 -11.90917 -11.56380 -11.46873 -11.43122 -11.28104 -10.83572 -10.61425 -10.41108 -10.34636 -10.18904 -9.77434 -9.65307 -9.52925 -9.32636 -8.43759 -8.38385 -7.50727 -6.05142 -4.09138 0.99238 1.88706 1.96578 2.09525 2.96933 3.27763 3.30450 3.36624 3.41006 3.42010 3.75966 4.15416 4.17597 4.30591 4.34234 4.45938 4.51181 4.68681 4.78957 5.01054 5.13026 5.13659 5.20972 5.28607 5.34299 5.34834 5.41719 5.45368 5.57963 5.76877 5.80592 5.92093 5.98354 6.11185 6.26458 6.49593 6.55215 6.70694 6.77071 7.08154 7.12097 7.20539 7.43252 7.47586 7.60523 7.80986 7.82678 7.90663 8.30224 8.96212 9.54840 11.04440 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.001998 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.122232 B =14007.963415 C =14521.462063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.051 3.949 5 O -0.373 6.373 6 C 0.036 3.964 7 C 0.114 3.886 8 H 0.110 0.890 9 N -0.693 5.693 10 C 0.514 3.486 11 O -0.517 6.517 12 C 0.500 3.500 13 O -0.499 6.499 14 N -0.633 5.633 15 C 0.095 3.905 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.036 4.036 19 C 0.047 3.953 20 C -0.511 4.511 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C -0.108 4.108 29 C -0.114 4.114 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.416 0.584 38 H 0.417 0.583 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.124 0.876 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 -15.450 23.204 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 H 0.115 0.885 4 C -0.026 4.026 5 O -0.292 6.292 6 C -0.042 4.042 7 C 0.009 3.991 8 H 0.128 0.872 9 N -0.347 5.347 10 C 0.295 3.705 11 O -0.392 6.392 12 C 0.281 3.719 13 O -0.373 6.373 14 N -0.279 5.279 15 C 0.003 3.997 16 C -0.155 4.155 17 C -0.126 4.126 18 C -0.037 4.037 19 C 0.010 3.990 20 C -0.550 4.550 21 H 0.076 0.924 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.723 3.277 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.127 4.127 29 C -0.134 4.134 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.254 0.746 38 H 0.254 0.746 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.237 -15.406 23.227 29.362 hybrid contribution -0.779 0.934 -0.277 1.248 sum -10.016 -14.472 22.950 28.922 Atomic orbital electron populations 1.21743 0.92765 1.02680 1.02936 1.23036 0.97601 1.00770 0.93872 0.88528 1.23651 0.84287 0.97766 0.96853 1.88933 1.28929 1.86409 1.24903 1.23653 0.99008 0.98975 0.82585 1.22602 0.96892 0.92186 0.87461 0.87230 1.45800 1.66470 1.15942 1.06504 1.20161 0.78685 0.87809 0.83889 1.90776 1.47907 1.18128 1.82400 1.20016 0.80121 0.87761 0.83969 1.90824 1.47190 1.17448 1.81826 1.43012 1.60128 1.18007 1.06802 1.17498 0.97367 0.96942 0.87878 1.20777 1.01019 1.01891 0.91810 1.20918 0.97102 0.95587 0.99010 1.20783 0.93624 0.93484 0.95796 1.18376 0.96338 0.92763 0.91523 1.21056 1.14344 1.00215 1.19354 0.92433 1.25013 0.95260 0.98612 0.95475 1.69957 1.26946 1.34350 1.22031 0.86532 0.80539 0.83395 0.77230 1.20567 1.21169 1.19811 1.21005 1.00589 0.98661 0.92400 1.20980 0.95609 0.96889 0.99903 0.91930 0.91550 0.91738 0.91509 0.88289 0.91014 0.89127 0.74611 0.74582 0.86455 0.85713 0.95184 0.95173 0.92836 0.85828 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.19 37.16 0.34 -0.25 16 2 C -0.13 -0.68 3.44 -88.61 -0.30 -0.99 16 3 H 0.10 0.48 7.75 -51.93 -0.40 0.08 16 4 C 0.05 0.27 7.18 38.21 0.27 0.55 16 5 O -0.37 -3.19 11.52 -35.23 -0.41 -3.60 16 6 C 0.04 0.28 7.50 37.73 0.28 0.56 16 7 C 0.11 0.79 2.93 -66.40 -0.19 0.60 16 8 H 0.11 0.79 7.39 -51.93 -0.38 0.41 16 9 N -0.69 -5.84 5.04 -52.79 -0.27 -6.11 16 10 C 0.51 5.61 7.88 -11.63 -0.09 5.52 16 11 O -0.52 -6.33 16.19 5.49 0.09 -6.24 16 12 C 0.50 6.55 7.62 -11.63 -0.09 6.46 16 13 O -0.50 -7.73 14.16 5.47 0.08 -7.65 16 14 N -0.63 -8.27 5.32 -10.30 -0.05 -8.33 16 15 C 0.10 1.53 6.28 -83.75 -0.53 1.00 16 16 C -0.13 -2.15 9.96 -39.38 -0.39 -2.54 16 17 C -0.11 -2.02 9.69 -39.61 -0.38 -2.40 16 18 C -0.04 -0.78 5.07 -104.58 -0.53 -1.31 16 19 C 0.05 1.19 5.10 -29.04 -0.15 1.04 16 20 C -0.51 -14.24 9.09 -34.44 -0.31 -14.55 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 24 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 28 C -0.11 -2.12 9.69 -39.61 -0.38 -2.51 16 29 C -0.11 -2.02 8.65 -39.38 -0.34 -2.36 16 30 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.28 8.01 -51.93 -0.42 -0.13 16 34 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.78 7.93 -51.93 -0.41 0.36 16 37 H 0.42 3.23 7.82 -40.82 -0.32 2.91 16 38 H 0.42 4.47 8.30 -40.82 -0.34 4.13 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 45 H 0.12 2.10 6.41 -52.49 -0.34 1.76 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -32.38 381.76 -8.36 -40.74 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.37 Total: 4.03 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.90 Total: -9.65 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.42 Total: -39.93 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.24 Total: -17.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.38 -8.36 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.623 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds