Wall clock time and date at job start Tue Mar 31 2020 17:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.82492 * 2 1 4 4 C 1.54996 * 110.90764 * 123.64362 * 2 1 3 5 5 O 1.44388 * 103.48639 * 155.22019 * 4 2 1 6 6 C 1.43736 * 106.97508 * 319.94168 * 5 4 2 7 7 C 1.54098 * 107.29879 * 26.51293 * 6 5 4 8 8 H 1.08997 * 110.49221 * 239.16052 * 7 6 5 9 9 N 1.46501 * 110.48845 * 116.64160 * 7 6 5 10 10 C 1.34783 * 119.99785 * 86.45965 * 9 7 6 11 11 O 1.21362 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.49348 * 119.99932 * 179.97438 * 10 9 7 13 13 O 1.21375 * 120.00201 * 0.02562 * 12 10 9 14 14 N 1.34782 * 119.99914 * 179.97438 * 12 10 9 15 15 C 1.39721 * 120.00003 * 185.27860 * 14 12 10 16 16 C 1.38929 * 120.07657 * 213.34582 * 15 14 12 17 17 C 1.38098 * 119.92519 * 179.97438 * 16 15 14 18 18 C 1.38289 * 120.07540 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.92204 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47338 * 89.99591 * 19 18 17 21 21 H 1.08001 * 120.00131 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99839 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00290 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47247 * 89.99707 * 24 22 20 26 26 H 1.48498 * 109.47636 * 209.99956 * 24 22 20 27 27 H 1.48503 * 109.46885 * 330.00052 * 24 22 20 28 28 C 1.38290 * 120.15204 * 0.26991 * 18 17 16 29 29 C 1.38100 * 120.07668 * 359.49630 * 28 18 17 30 30 H 1.09006 * 109.46887 * 183.65002 * 1 2 3 31 31 H 1.09004 * 109.46886 * 303.64572 * 1 2 3 32 32 H 1.09001 * 109.47530 * 63.64634 * 1 2 3 33 33 H 1.09003 * 110.61533 * 36.72732 * 4 2 1 34 34 H 1.08992 * 110.75316 * 273.78946 * 4 2 1 35 35 H 1.09004 * 109.87789 * 267.08475 * 6 5 4 36 36 H 1.09005 * 110.00154 * 146.00844 * 6 5 4 37 37 H 0.96999 * 120.00084 * 266.45259 * 9 7 6 38 38 H 0.97001 * 119.99869 * 5.27726 * 14 12 10 39 39 H 1.08004 * 120.03535 * 359.96009 * 16 15 14 40 40 H 1.08002 * 119.96115 * 180.02562 * 17 16 15 41 41 H 1.08999 * 109.46960 * 209.99728 * 19 18 17 42 42 H 1.08998 * 109.46912 * 329.99612 * 19 18 17 43 43 H 0.97001 * 119.99850 * 180.02562 * 23 22 20 44 44 H 1.08000 * 119.96183 * 179.72336 * 28 18 17 45 45 H 1.08000 * 120.03538 * 180.25309 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9175 1.0188 0.0000 4 6 2.0831 -0.8022 1.2054 5 8 3.3942 -1.2143 0.7625 6 6 3.2718 -1.5882 -0.6200 7 6 2.0824 -0.8013 -1.2039 8 1 1.3256 -1.4843 -1.5897 9 7 2.5373 0.1073 -2.2592 10 6 2.6490 -0.3352 -3.5275 11 8 2.3733 -1.4864 -3.7950 12 6 3.1122 0.5912 -4.6035 13 8 3.3884 1.7424 -4.3358 14 7 3.2245 0.1486 -5.8716 15 6 3.7616 0.9808 -6.8570 16 6 3.2985 0.9005 -8.1644 17 6 3.8313 1.7250 -9.1358 18 6 4.8242 2.6301 -8.8083 19 6 5.4027 3.5285 -9.8710 20 6 4.6075 4.8069 -9.9355 21 1 3.7674 4.9544 -9.2730 22 6 4.9530 5.7888 -10.8397 23 7 5.9769 5.6099 -11.6454 24 14 3.9677 7.3739 -10.9192 25 1 4.5571 8.3703 -9.9892 26 1 4.0014 7.9088 -12.3041 27 1 2.5612 7.1026 -10.5275 28 6 5.2910 2.7092 -7.5090 29 6 4.7593 1.8911 -6.5316 30 1 -0.3633 -1.0256 0.0654 31 1 -0.3633 0.5694 0.8555 32 1 -0.3634 0.4562 -0.9208 33 1 1.4562 -1.6704 1.4088 34 1 2.1580 -0.1687 2.0892 35 1 3.0826 -2.6588 -0.6991 36 1 4.1850 -1.3327 -1.1576 37 1 2.7579 1.0273 -2.0453 38 1 2.9324 -0.7477 -6.1001 39 1 2.5230 0.1940 -8.4208 40 1 3.4715 1.6633 -10.1522 41 1 6.4401 3.7578 -9.6276 42 1 5.3589 3.0243 -10.8363 43 1 6.2202 6.3008 -12.2813 44 1 6.0697 3.4141 -7.2576 45 1 5.1215 1.9563 -5.5162 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337618335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:37 Heat of formation + Delta-G solvation = -114.367786 kcal Electronic energy + Delta-G solvation = -27203.509647 eV Core-core repulsion = 23184.833943 eV Total energy + Delta-G solvation = -4018.675704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.25564 -41.08786 -40.05303 -39.21951 -36.73731 -35.87384 -34.98478 -33.82339 -32.31822 -31.83997 -30.17498 -28.75307 -27.23956 -26.36735 -24.85336 -23.94164 -23.36092 -21.99456 -21.95281 -21.19584 -19.80708 -18.67030 -18.49886 -17.98555 -17.53093 -17.22366 -16.87233 -16.74014 -16.52130 -16.00501 -15.93580 -15.70657 -15.14172 -14.99428 -14.64900 -14.49735 -14.31079 -14.24660 -14.11877 -13.71797 -13.42428 -13.35846 -13.23055 -12.97035 -12.91157 -12.62281 -12.48513 -12.43565 -12.04637 -11.97203 -11.86058 -11.69569 -11.52832 -11.14790 -10.91485 -10.79153 -10.59946 -10.32920 -9.81540 -8.98600 -8.19011 -6.32686 -0.07191 0.52544 0.62189 1.09967 1.39931 1.40608 1.52111 1.96242 2.39693 2.41307 2.89210 2.94721 3.10883 3.19023 3.31185 3.69905 3.83125 3.97148 4.00304 4.08737 4.21066 4.35076 4.40170 4.52035 4.53973 4.57308 4.62950 4.66933 4.68801 4.81235 4.91645 4.99360 5.08159 5.17386 5.23861 5.27246 5.30532 5.37634 5.37742 5.53713 5.71668 5.75342 5.83410 6.05410 6.06999 6.19299 6.22130 6.57759 6.77276 6.79855 7.35615 8.89171 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.001998 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.122232 B =14007.963415 C =14521.462063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 H 0.099 0.901 4 C 0.048 3.952 5 O -0.396 6.396 6 C 0.036 3.964 7 C 0.113 3.887 8 H 0.112 0.888 9 N -0.680 5.680 10 C 0.523 3.477 11 O -0.529 6.529 12 C 0.502 3.498 13 O -0.523 6.523 14 N -0.626 5.626 15 C 0.110 3.890 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.069 4.069 19 C 0.056 3.944 20 C -0.527 4.527 21 H 0.053 0.947 22 C 0.004 3.996 23 N -0.928 5.928 24 Si 0.964 3.036 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.266 1.266 28 C -0.118 4.118 29 C -0.117 4.117 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.421 0.579 38 H 0.432 0.568 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.004 0.996 42 H 0.010 0.990 43 H 0.265 0.735 44 H 0.116 0.884 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 -16.271 25.082 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 H 0.117 0.883 4 C -0.028 4.028 5 O -0.315 6.315 6 C -0.042 4.042 7 C 0.008 3.992 8 H 0.129 0.871 9 N -0.333 5.333 10 C 0.303 3.697 11 O -0.406 6.406 12 C 0.284 3.716 13 O -0.398 6.398 14 N -0.273 5.273 15 C 0.016 3.984 16 C -0.141 4.141 17 C -0.131 4.131 18 C -0.069 4.069 19 C 0.019 3.981 20 C -0.565 4.565 21 H 0.071 0.929 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.788 3.212 25 H -0.199 1.199 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.136 4.136 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.259 0.741 38 H 0.271 0.729 39 H 0.176 0.824 40 H 0.147 0.853 41 H 0.022 0.978 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.602 -16.252 25.140 32.105 hybrid contribution -0.054 1.099 -0.731 1.321 sum -11.656 -15.152 24.409 31.004 Atomic orbital electron populations 1.21735 0.91729 1.03295 1.03087 1.23021 0.98308 1.00509 0.92687 0.88313 1.23861 0.83190 0.98569 0.97227 1.88910 1.30852 1.86646 1.25093 1.23620 0.98675 0.99393 0.82505 1.22744 0.96674 0.92248 0.87500 0.87056 1.45813 1.65219 1.16366 1.05951 1.19689 0.78901 0.87102 0.84057 1.90782 1.48881 1.18311 1.82585 1.20429 0.79190 0.87709 0.84225 1.90821 1.48118 1.18680 1.82208 1.42942 1.59775 1.18279 1.06336 1.17562 0.96060 0.96030 0.88699 1.21051 1.00901 1.01315 0.90822 1.20996 0.96510 0.95497 1.00076 1.20476 0.96024 0.95041 0.95366 1.18113 0.94977 0.92968 0.92047 1.21366 1.14410 1.01516 1.19244 0.92921 1.25904 0.96293 1.02149 0.95041 1.70073 1.28427 1.35623 1.22715 0.85468 0.79144 0.79034 0.77554 1.19893 1.20355 1.19083 1.20943 1.00918 0.99400 0.92375 1.21017 0.96089 0.97042 0.99579 0.91270 0.90350 0.92486 0.90192 0.86934 0.90471 0.90325 0.74114 0.72861 0.82377 0.85313 0.97806 0.97203 0.92571 0.86599 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.19 71.98 0.66 -0.14 16 2 C -0.13 -1.01 3.44 -9.49 -0.03 -1.04 16 3 H 0.10 0.77 7.75 -2.39 -0.02 0.75 16 4 C 0.05 0.40 7.18 72.67 0.52 0.92 16 5 O -0.40 -6.20 11.52 -148.98 -1.72 -7.92 16 6 C 0.04 0.51 7.50 72.35 0.54 1.05 16 7 C 0.11 1.36 2.93 45.98 0.13 1.50 16 8 H 0.11 1.37 7.39 -2.39 -0.02 1.35 16 9 N -0.68 -10.27 5.04 -439.27 -2.21 -12.49 16 10 C 0.52 10.39 7.88 87.24 0.69 11.08 16 11 O -0.53 -11.80 16.19 -3.28 -0.05 -11.85 16 12 C 0.50 12.19 7.62 87.24 0.67 12.85 16 13 O -0.52 -15.46 14.16 -3.32 -0.05 -15.51 16 14 N -0.63 -14.78 5.32 -304.84 -1.62 -16.41 16 15 C 0.11 3.30 6.28 38.21 0.24 3.54 16 16 C -0.12 -3.57 9.96 22.40 0.22 -3.35 16 17 C -0.11 -4.16 9.69 22.25 0.22 -3.94 16 18 C -0.07 -3.01 5.07 -19.84 -0.10 -3.11 16 19 C 0.06 2.98 5.10 29.10 0.15 3.13 16 20 C -0.53 -30.25 9.09 25.60 0.23 -30.01 16 21 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 22 C 0.00 0.25 5.46 84.65 0.46 0.71 16 23 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 24 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 C -0.12 -4.75 9.69 22.25 0.22 -4.54 16 29 C -0.12 -4.09 8.65 22.40 0.19 -3.89 16 30 H 0.07 0.31 8.09 -2.38 -0.02 0.29 16 31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.47 8.01 -2.39 -0.02 0.45 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 1.29 7.93 -2.38 -0.02 1.27 16 37 H 0.42 5.83 7.82 -92.71 -0.73 5.11 16 38 H 0.43 7.89 8.30 -92.71 -0.77 7.12 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 40 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 41 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16 42 H 0.01 0.54 8.08 -2.39 -0.02 0.52 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.13 4.34 6.41 -2.91 -0.02 4.32 16 Total: -1.00 -70.78 381.76 1.20 -69.58 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.47 Total: 18.83 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 5.01 Total: -15.24 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -3.55 Total: -84.52 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.82 Total: -35.27 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.78 1.20 -69.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.787 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds