Wall clock time and date at job start Tue Mar 31 2020 17:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.56691 * 2 1 4 4 C 1.54481 * 110.51023 * 237.32432 * 2 1 3 5 5 O 1.44421 * 104.80320 * 265.33171 * 4 2 1 6 6 C 1.44417 * 105.27879 * 319.48948 * 5 4 2 7 7 C 1.54480 * 104.80419 * 40.50838 * 6 5 4 8 8 H 1.09001 * 110.63356 * 217.32151 * 7 6 5 9 9 N 1.46502 * 110.51072 * 94.66659 * 7 6 5 10 10 C 1.34772 * 119.99625 * 90.35810 * 9 7 6 11 11 O 1.21362 * 120.00312 * 0.02562 * 10 9 7 12 12 C 1.49359 * 119.99756 * 180.02562 * 10 9 7 13 13 O 1.21376 * 120.00097 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00145 * 180.02562 * 12 10 9 15 15 C 1.39719 * 120.00482 * 185.27879 * 14 12 10 16 16 C 1.38925 * 120.07830 * 213.32712 * 15 14 12 17 17 C 1.38098 * 119.92332 * 180.02562 * 16 15 14 18 18 C 1.38289 * 120.07864 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.92856 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46988 * 90.00041 * 19 18 17 21 21 H 1.07997 * 120.00208 * 0.02562 * 20 19 18 22 22 C 1.37870 * 119.99821 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99960 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00053 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47118 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47480 * 120.00158 * 24 22 20 27 27 H 1.48502 * 109.47099 * 240.00054 * 24 22 20 28 28 C 1.38297 * 120.14853 * 0.26034 * 18 17 16 29 29 C 1.38092 * 120.07914 * 359.48569 * 28 18 17 30 30 H 1.09005 * 109.47327 * 297.31618 * 1 2 3 31 31 H 1.08998 * 109.47580 * 57.31621 * 1 2 3 32 32 H 1.08995 * 109.47348 * 177.31896 * 1 2 3 33 33 H 1.09004 * 110.37287 * 24.16546 * 4 2 1 34 34 H 1.09003 * 110.37134 * 146.38915 * 4 2 1 35 35 H 1.09005 * 110.37369 * 281.68498 * 6 5 4 36 36 H 1.08995 * 110.37842 * 159.34179 * 6 5 4 37 37 H 0.97000 * 119.99901 * 270.36174 * 9 7 6 38 38 H 0.97007 * 119.99865 * 5.26971 * 14 12 10 39 39 H 1.07997 * 120.03905 * 0.04122 * 16 15 14 40 40 H 1.07999 * 119.96095 * 179.97438 * 17 16 15 41 41 H 1.08995 * 109.47269 * 210.00477 * 19 18 17 42 42 H 1.09001 * 109.46480 * 330.00358 * 19 18 17 43 43 H 0.97008 * 119.99901 * 179.97438 * 23 22 20 44 44 H 1.08001 * 119.95990 * 179.71737 * 28 18 17 45 45 H 1.08004 * 120.04035 * 180.22842 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0712 -0.7811 -1.2179 5 8 2.3069 -2.1176 -0.7240 6 6 2.8756 -1.9423 0.5919 7 6 2.0714 -0.7814 1.2180 8 1 2.7200 -0.1465 1.8215 9 7 0.9661 -1.3006 2.0273 10 6 1.1521 -1.5553 3.3376 11 8 2.2350 -1.3540 3.8472 12 6 0.0254 -2.0851 4.1627 13 8 -1.0575 -2.2868 3.6530 14 7 0.2112 -2.3393 5.4732 15 6 -0.8069 -2.9375 6.2200 16 6 -0.9723 -2.6094 7.5598 17 6 -1.9793 -3.2030 8.2952 18 6 -2.8228 -4.1226 7.6993 19 6 -3.9203 -4.7688 8.5050 20 6 -5.1719 -3.9350 8.4085 21 1 -5.1728 -3.0282 7.8219 22 6 -6.3159 -4.3299 9.0689 23 7 -6.3150 -5.4345 9.7828 24 14 -7.8675 -3.2969 8.9487 25 1 -7.6085 -2.1127 8.0908 26 1 -8.9588 -4.1100 8.3545 27 1 -8.2686 -2.8462 10.3056 28 6 -2.6579 -4.4552 6.3670 29 6 -1.6564 -3.8616 5.6244 30 1 -0.3634 0.4716 0.9131 31 1 -0.3634 0.5549 -0.8649 32 1 -0.3634 -1.0265 -0.0481 33 1 1.3309 -0.7973 -2.0179 34 1 3.0012 -0.3359 -1.5714 35 1 3.9301 -1.6762 0.5172 36 1 2.7534 -2.8503 1.1823 37 1 0.1005 -1.4612 1.6201 38 1 1.0519 -2.1070 5.8978 39 1 -0.3144 -1.8908 8.0257 40 1 -2.1082 -2.9487 9.3368 41 1 -4.1177 -5.7672 8.1150 42 1 -3.6111 -4.8406 9.5478 43 1 -7.1198 -5.7121 10.2478 44 1 -3.3156 -5.1772 5.9059 45 1 -1.5305 -4.1190 4.5831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337618337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:43 Heat of formation + Delta-G solvation = -85.442056 kcal Electronic energy + Delta-G solvation = -27441.523955 eV Core-core repulsion = 23424.102565 eV Total energy + Delta-G solvation = -4017.421390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34400 -40.30508 -39.00993 -37.99834 -35.71185 -34.88504 -33.06579 -32.81561 -30.62431 -30.39706 -29.67404 -27.12625 -26.95950 -25.16788 -23.39108 -22.63356 -22.44582 -20.98285 -20.49582 -20.13169 -19.03145 -17.54113 -17.19689 -16.71556 -16.48527 -16.30640 -16.05263 -15.70309 -15.07756 -14.95988 -14.59347 -14.37637 -14.24565 -13.96332 -13.66472 -13.60121 -13.13365 -12.92950 -12.83351 -12.63339 -12.29395 -12.07261 -11.97001 -11.77494 -11.68001 -11.45235 -11.39452 -11.28150 -10.83451 -10.59482 -10.42381 -10.41454 -10.16476 -9.75517 -9.60080 -9.52091 -9.30571 -8.43706 -8.37461 -7.49533 -6.04863 -4.08760 1.01996 1.91063 1.97856 2.13130 2.99287 3.29503 3.36501 3.37244 3.42845 3.43853 3.80643 4.18749 4.21644 4.28978 4.35079 4.49866 4.51907 4.73361 4.82024 5.00252 5.09998 5.14058 5.26849 5.29064 5.33227 5.35769 5.43094 5.46541 5.65969 5.77568 5.80171 5.93196 5.99418 6.12121 6.23563 6.52150 6.56269 6.72170 6.80344 7.09069 7.13144 7.22767 7.45327 7.49471 7.61795 7.81689 7.84620 7.91169 8.30713 8.96924 9.55307 11.04760 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.002099 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.716143 B =13333.756743 C =14012.590255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 H 0.098 0.902 4 C 0.046 3.954 5 O -0.369 6.369 6 C 0.034 3.966 7 C 0.112 3.888 8 H 0.111 0.889 9 N -0.693 5.693 10 C 0.512 3.488 11 O -0.520 6.520 12 C 0.500 3.500 13 O -0.499 6.499 14 N -0.634 5.634 15 C 0.095 3.905 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.037 4.037 19 C 0.046 3.954 20 C -0.510 4.510 21 H 0.058 0.942 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 C -0.108 4.108 29 C -0.114 4.114 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.418 0.582 38 H 0.417 0.583 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.261 0.739 44 H 0.124 0.876 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.700 10.772 -19.023 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 H 0.116 0.884 4 C -0.031 4.031 5 O -0.288 6.288 6 C -0.044 4.044 7 C 0.007 3.993 8 H 0.129 0.871 9 N -0.349 5.349 10 C 0.293 3.707 11 O -0.395 6.395 12 C 0.281 3.719 13 O -0.373 6.373 14 N -0.280 5.280 15 C 0.003 3.997 16 C -0.155 4.155 17 C -0.126 4.126 18 C -0.037 4.037 19 C 0.010 3.990 20 C -0.549 4.549 21 H 0.076 0.924 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.723 3.277 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.210 1.210 28 C -0.126 4.126 29 C -0.134 4.134 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.259 0.741 38 H 0.254 0.746 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.142 0.858 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 19.565 10.464 -19.070 29.257 hybrid contribution -0.823 0.849 0.135 1.191 sum 18.742 11.313 -18.935 28.944 Atomic orbital electron populations 1.21824 0.93386 1.02759 1.03122 1.22846 0.97981 1.00500 0.93913 0.88367 1.23566 1.00474 0.82864 0.96192 1.89193 1.83073 1.25728 1.30790 1.23909 0.96974 0.99307 0.84170 1.22497 0.88777 0.95575 0.92460 0.87091 1.46011 1.16172 1.64442 1.08280 1.20169 0.88429 0.78879 0.83228 1.90768 1.25974 1.50731 1.72038 1.20038 0.88332 0.80090 0.83428 1.90821 1.25184 1.49859 1.71455 1.43012 1.18024 1.58495 1.08438 1.17501 0.93140 0.97587 0.91426 1.20772 1.00366 1.01598 0.92774 1.20914 0.94490 0.97137 1.00093 1.20782 0.94709 0.94007 0.94208 1.18381 0.90319 0.95825 0.94503 1.21098 0.94773 1.08645 1.30353 0.92374 1.25014 0.98947 0.95218 0.95214 1.69970 1.28690 1.22730 1.31917 0.86480 0.83016 0.80409 0.77838 1.19648 1.20925 1.20955 1.21004 0.97267 1.00382 0.93994 1.20984 0.96427 0.95888 1.00087 0.91469 0.91288 0.91606 0.88454 0.91724 0.90763 0.88453 0.74138 0.74589 0.86462 0.85725 0.95178 0.95179 0.92895 0.85834 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 7.79 37.15 0.29 -0.54 16 2 C -0.13 -0.67 3.72 -89.05 -0.33 -1.00 16 3 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 4 C 0.05 0.25 7.18 37.93 0.27 0.52 16 5 O -0.37 -3.15 11.65 -35.23 -0.41 -3.56 16 6 C 0.03 0.25 7.35 37.93 0.28 0.53 16 7 C 0.11 0.78 3.46 -66.36 -0.23 0.55 16 8 H 0.11 0.77 7.55 -51.93 -0.39 0.38 16 9 N -0.69 -6.16 4.55 -52.74 -0.24 -6.40 16 10 C 0.51 5.75 7.89 -11.63 -0.09 5.65 16 11 O -0.52 -6.44 16.13 5.49 0.09 -6.35 16 12 C 0.50 6.69 7.62 -11.63 -0.09 6.60 16 13 O -0.50 -7.88 14.16 5.47 0.08 -7.80 16 14 N -0.63 -8.39 5.32 -10.29 -0.05 -8.44 16 15 C 0.10 1.55 6.28 -83.75 -0.53 1.02 16 16 C -0.14 -2.17 9.96 -39.38 -0.39 -2.56 16 17 C -0.11 -2.03 9.69 -39.61 -0.38 -2.41 16 18 C -0.04 -0.78 5.07 -104.58 -0.53 -1.31 16 19 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 20 C -0.51 -14.24 9.09 -34.44 -0.31 -14.56 16 21 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 24 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C -0.11 -2.13 9.69 -39.61 -0.38 -2.52 16 29 C -0.11 -2.03 8.65 -39.38 -0.34 -2.37 16 30 H 0.07 0.41 7.78 -51.93 -0.40 0.00 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.41 7.00 -51.93 -0.36 0.05 16 33 H 0.10 0.43 7.87 -51.93 -0.41 0.02 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.82 8.06 -51.93 -0.42 0.40 16 37 H 0.42 3.64 5.44 -40.82 -0.22 3.42 16 38 H 0.42 4.53 8.30 -40.82 -0.34 4.19 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 41 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 45 H 0.12 2.13 6.42 -52.48 -0.34 1.79 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -32.47 377.33 -8.38 -40.85 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.22 Total: 4.83 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.02 Total: -9.84 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.44 Total: -40.39 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.24 Total: -17.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.47 -8.38 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.591 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds