Wall clock time and date at job start Tue Mar 31 2020 17:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.56691 * 2 1 4 4 C 1.54481 * 110.51023 * 237.32432 * 2 1 3 5 5 O 1.44421 * 104.80320 * 265.33171 * 4 2 1 6 6 C 1.44417 * 105.27879 * 319.48948 * 5 4 2 7 7 C 1.54480 * 104.80419 * 40.50838 * 6 5 4 8 8 H 1.09001 * 110.63356 * 217.32151 * 7 6 5 9 9 N 1.46502 * 110.51072 * 94.66659 * 7 6 5 10 10 C 1.34772 * 119.99625 * 90.35810 * 9 7 6 11 11 O 1.21362 * 120.00312 * 0.02562 * 10 9 7 12 12 C 1.49359 * 119.99756 * 180.02562 * 10 9 7 13 13 O 1.21376 * 120.00097 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00145 * 180.02562 * 12 10 9 15 15 C 1.39719 * 120.00482 * 185.27879 * 14 12 10 16 16 C 1.38925 * 120.07830 * 213.32712 * 15 14 12 17 17 C 1.38098 * 119.92332 * 180.02562 * 16 15 14 18 18 C 1.38289 * 120.07864 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.92856 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46988 * 90.00041 * 19 18 17 21 21 H 1.07997 * 120.00208 * 0.02562 * 20 19 18 22 22 C 1.37870 * 119.99821 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99960 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00053 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47118 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47480 * 120.00158 * 24 22 20 27 27 H 1.48502 * 109.47099 * 240.00054 * 24 22 20 28 28 C 1.38297 * 120.14853 * 0.26034 * 18 17 16 29 29 C 1.38092 * 120.07914 * 359.48569 * 28 18 17 30 30 H 1.09005 * 109.47327 * 297.31618 * 1 2 3 31 31 H 1.08998 * 109.47580 * 57.31621 * 1 2 3 32 32 H 1.08995 * 109.47348 * 177.31896 * 1 2 3 33 33 H 1.09004 * 110.37287 * 24.16546 * 4 2 1 34 34 H 1.09003 * 110.37134 * 146.38915 * 4 2 1 35 35 H 1.09005 * 110.37369 * 281.68498 * 6 5 4 36 36 H 1.08995 * 110.37842 * 159.34179 * 6 5 4 37 37 H 0.97000 * 119.99901 * 270.36174 * 9 7 6 38 38 H 0.97007 * 119.99865 * 5.26971 * 14 12 10 39 39 H 1.07997 * 120.03905 * 0.04122 * 16 15 14 40 40 H 1.07999 * 119.96095 * 179.97438 * 17 16 15 41 41 H 1.08995 * 109.47269 * 210.00477 * 19 18 17 42 42 H 1.09001 * 109.46480 * 330.00358 * 19 18 17 43 43 H 0.97008 * 119.99901 * 179.97438 * 23 22 20 44 44 H 1.08001 * 119.95990 * 179.71737 * 28 18 17 45 45 H 1.08004 * 120.04035 * 180.22842 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0712 -0.7811 -1.2179 5 8 2.3069 -2.1176 -0.7240 6 6 2.8756 -1.9423 0.5919 7 6 2.0714 -0.7814 1.2180 8 1 2.7200 -0.1465 1.8215 9 7 0.9661 -1.3006 2.0273 10 6 1.1521 -1.5553 3.3376 11 8 2.2350 -1.3540 3.8472 12 6 0.0254 -2.0851 4.1627 13 8 -1.0575 -2.2868 3.6530 14 7 0.2112 -2.3393 5.4732 15 6 -0.8069 -2.9375 6.2200 16 6 -0.9723 -2.6094 7.5598 17 6 -1.9793 -3.2030 8.2952 18 6 -2.8228 -4.1226 7.6993 19 6 -3.9203 -4.7688 8.5050 20 6 -5.1719 -3.9350 8.4085 21 1 -5.1728 -3.0282 7.8219 22 6 -6.3159 -4.3299 9.0689 23 7 -6.3150 -5.4345 9.7828 24 14 -7.8675 -3.2969 8.9487 25 1 -7.6085 -2.1127 8.0908 26 1 -8.9588 -4.1100 8.3545 27 1 -8.2686 -2.8462 10.3056 28 6 -2.6579 -4.4552 6.3670 29 6 -1.6564 -3.8616 5.6244 30 1 -0.3634 0.4716 0.9131 31 1 -0.3634 0.5549 -0.8649 32 1 -0.3634 -1.0265 -0.0481 33 1 1.3309 -0.7973 -2.0179 34 1 3.0012 -0.3359 -1.5714 35 1 3.9301 -1.6762 0.5172 36 1 2.7534 -2.8503 1.1823 37 1 0.1005 -1.4612 1.6201 38 1 1.0519 -2.1070 5.8978 39 1 -0.3144 -1.8908 8.0257 40 1 -2.1082 -2.9487 9.3368 41 1 -4.1177 -5.7672 8.1150 42 1 -3.6111 -4.8406 9.5478 43 1 -7.1198 -5.7121 10.2478 44 1 -3.3156 -5.1772 5.9059 45 1 -1.5305 -4.1190 4.5831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337618337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:42 Heat of formation + Delta-G solvation = -107.240414 kcal Electronic energy + Delta-G solvation = -27442.469202 eV Core-core repulsion = 23424.102565 eV Total energy + Delta-G solvation = -4018.366638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.28296 -41.15522 -40.03286 -39.20383 -36.74308 -35.92579 -34.98853 -33.40749 -32.31881 -31.84146 -30.31543 -28.76690 -27.40782 -26.43048 -24.84465 -23.94047 -23.42696 -22.15167 -21.39979 -21.09570 -20.02560 -18.60310 -18.48580 -18.00646 -17.49750 -17.22348 -17.07240 -16.77762 -16.36006 -15.99341 -15.90923 -15.65472 -15.12282 -15.01072 -14.64552 -14.51040 -14.37085 -14.27404 -14.08503 -13.71918 -13.37439 -13.29783 -13.23189 -12.90593 -12.85234 -12.63196 -12.44852 -12.28148 -12.14422 -12.04380 -11.79670 -11.67965 -11.53222 -11.14383 -10.95598 -10.78552 -10.60465 -10.28086 -9.81704 -8.98653 -8.19284 -6.32912 -0.06626 0.52434 0.62533 1.12865 1.39100 1.40017 1.53368 1.96982 2.39765 2.44699 2.94560 2.96547 3.10653 3.21017 3.35704 3.71997 3.87917 4.00093 4.03863 4.08625 4.23849 4.34914 4.41499 4.47905 4.52184 4.56748 4.62823 4.66247 4.75821 4.79131 4.92988 5.00562 5.07949 5.09590 5.23749 5.25209 5.27280 5.37545 5.37681 5.53580 5.70759 5.75335 5.85622 6.05291 6.06972 6.19546 6.22094 6.58502 6.78002 6.79878 7.35511 8.89120 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.002099 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.716143 B =13333.756743 C =14012.590255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 H 0.121 0.879 4 C 0.042 3.958 5 O -0.396 6.396 6 C 0.034 3.966 7 C 0.108 3.892 8 H 0.117 0.883 9 N -0.682 5.682 10 C 0.520 3.480 11 O -0.530 6.530 12 C 0.501 3.499 13 O -0.524 6.524 14 N -0.626 5.626 15 C 0.109 3.891 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.068 4.068 19 C 0.056 3.944 20 C -0.526 4.526 21 H 0.052 0.948 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.274 1.274 28 C -0.118 4.118 29 C -0.118 4.118 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.419 0.581 38 H 0.432 0.568 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.004 0.996 42 H 0.010 0.990 43 H 0.265 0.735 44 H 0.116 0.884 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.133 13.377 -20.427 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 H 0.139 0.861 4 C -0.034 4.034 5 O -0.315 6.315 6 C -0.044 4.044 7 C 0.004 3.996 8 H 0.135 0.865 9 N -0.337 5.337 10 C 0.300 3.700 11 O -0.407 6.407 12 C 0.283 3.717 13 O -0.400 6.400 14 N -0.273 5.273 15 C 0.016 3.984 16 C -0.141 4.141 17 C -0.131 4.131 18 C -0.069 4.069 19 C 0.019 3.981 20 C -0.564 4.564 21 H 0.071 0.929 22 C -0.194 4.194 23 N -0.569 5.569 24 Si 0.788 3.212 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.200 1.200 28 C -0.136 4.136 29 C -0.138 4.138 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.260 0.740 38 H 0.272 0.728 39 H 0.177 0.823 40 H 0.147 0.853 41 H 0.022 0.978 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.032 13.085 -20.499 32.152 hybrid contribution -1.168 0.052 0.462 1.257 sum 19.864 13.136 -20.038 31.123 Atomic orbital electron populations 1.21832 0.93769 1.02154 1.03448 1.22862 0.97565 1.01306 0.92633 0.86099 1.23764 1.01675 0.81614 0.96349 1.89168 1.83364 1.27746 1.31196 1.23925 0.97961 0.98702 0.83800 1.22714 0.88255 0.95747 0.92930 0.86545 1.46077 1.16846 1.63246 1.07552 1.19695 0.87431 0.79133 0.83723 1.90771 1.25941 1.51639 1.72349 1.20481 0.88586 0.79258 0.83362 1.90817 1.26421 1.50814 1.71908 1.42940 1.17899 1.58032 1.08425 1.17570 0.92779 0.96262 0.91751 1.21048 0.99525 1.01121 0.92368 1.20998 0.94778 0.96665 1.00618 1.20478 0.95346 0.96354 0.94724 1.18116 0.91400 0.94707 0.93885 1.21394 0.96143 1.08696 1.30197 0.92949 1.25904 1.02337 0.96402 0.94759 1.70082 1.29802 1.24282 1.32719 0.85412 0.78799 0.78762 0.78182 1.19151 1.20256 1.19982 1.20941 0.98160 1.00871 0.93663 1.21015 0.96324 0.96252 1.00184 0.92181 0.89824 0.92791 0.87714 0.89927 0.89029 0.90027 0.74005 0.72849 0.82345 0.85265 0.97801 0.97177 0.92566 0.86612 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.79 71.98 0.56 -0.81 16 2 C -0.12 -0.94 3.72 -9.78 -0.04 -0.97 16 3 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 4 C 0.04 0.35 7.18 72.49 0.52 0.87 16 5 O -0.40 -6.18 11.65 -148.98 -1.74 -7.91 16 6 C 0.03 0.45 7.35 72.49 0.53 0.98 16 7 C 0.11 1.28 3.46 46.01 0.16 1.44 16 8 H 0.12 1.32 7.55 -2.39 -0.02 1.30 16 9 N -0.68 -11.08 4.55 -439.14 -2.00 -13.08 16 10 C 0.52 10.75 7.89 87.24 0.69 11.44 16 11 O -0.53 -11.98 16.13 -3.28 -0.05 -12.03 16 12 C 0.50 12.57 7.62 87.24 0.67 13.24 16 13 O -0.52 -16.00 14.16 -3.33 -0.05 -16.05 16 14 N -0.63 -15.11 5.32 -304.83 -1.62 -16.73 16 15 C 0.11 3.35 6.28 38.22 0.24 3.59 16 16 C -0.12 -3.59 9.96 22.40 0.22 -3.37 16 17 C -0.11 -4.17 9.69 22.25 0.22 -3.95 16 18 C -0.07 -3.03 5.07 -19.84 -0.10 -3.13 16 19 C 0.06 2.99 5.10 29.10 0.15 3.14 16 20 C -0.53 -30.27 9.09 25.60 0.23 -30.04 16 21 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 22 C 0.00 0.24 5.46 84.65 0.46 0.70 16 23 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 24 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 28 C -0.12 -4.80 9.69 22.25 0.22 -4.58 16 29 C -0.12 -4.16 8.65 22.40 0.19 -3.97 16 30 H 0.06 0.63 7.78 -2.38 -0.02 0.61 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.61 7.00 -2.39 -0.02 0.59 16 33 H 0.10 0.70 7.87 -2.39 -0.02 0.68 16 34 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.08 1.32 8.06 -2.39 -0.02 1.30 16 37 H 0.42 6.83 5.44 -92.71 -0.50 6.33 16 38 H 0.43 8.07 8.30 -92.70 -0.77 7.30 16 39 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 41 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16 42 H 0.01 0.56 8.08 -2.39 -0.02 0.54 16 43 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 44 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 45 H 0.13 4.39 6.42 -2.91 -0.02 4.38 16 Total: -1.00 -71.30 377.33 1.54 -69.77 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.24 Total: 20.47 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.92 Total: -15.43 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -3.33 Total: -85.54 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.84 Total: -36.00 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.30 1.54 -69.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.472 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds