Wall clock time and date at job start Tue Mar 31 2020 17:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.56424 * 2 1 4 4 C 1.54478 * 110.50890 * 122.67099 * 2 1 3 5 5 O 1.44695 * 104.83738 * 142.62464 * 4 2 1 6 6 C 1.44418 * 105.14074 * 319.52161 * 5 4 2 7 7 C 1.54478 * 104.89984 * 40.49594 * 6 5 4 8 8 H 1.08994 * 110.51362 * 94.61202 * 7 6 5 9 9 N 1.46504 * 110.51103 * 217.18268 * 7 6 5 10 10 C 1.34771 * 120.00502 * 273.54560 * 9 7 6 11 11 O 1.21366 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.49349 * 120.00482 * 179.97438 * 10 9 7 13 13 O 1.21380 * 119.99800 * 0.02562 * 12 10 9 14 14 N 1.34778 * 119.99967 * 179.97438 * 12 10 9 15 15 C 1.39730 * 119.99799 * 175.37832 * 14 12 10 16 16 C 1.38927 * 120.07667 * 214.82043 * 15 14 12 17 17 C 1.38101 * 119.92049 * 179.81703 * 16 15 14 18 18 C 1.38290 * 120.07604 * 0.44045 * 17 16 15 19 19 C 1.50695 * 119.92075 * 179.76689 * 18 17 16 20 20 C 1.50702 * 109.47315 * 270.02056 * 19 18 17 21 21 H 1.07999 * 120.00092 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00271 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99790 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00163 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47192 * 60.00509 * 24 22 20 26 26 H 1.48495 * 109.47222 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47356 * 300.00605 * 24 22 20 28 28 C 1.38295 * 120.15200 * 359.79475 * 18 17 16 29 29 C 1.38091 * 120.07771 * 359.97438 * 28 18 17 30 30 H 1.08994 * 109.47083 * 182.67659 * 1 2 3 31 31 H 1.08997 * 109.47296 * 302.68485 * 1 2 3 32 32 H 1.09004 * 109.46665 * 62.68508 * 1 2 3 33 33 H 1.08993 * 110.37664 * 261.45628 * 4 2 1 34 34 H 1.08997 * 110.37042 * 23.68858 * 4 2 1 35 35 H 1.09000 * 110.37334 * 281.61081 * 6 5 4 36 36 H 1.09000 * 110.37564 * 159.37901 * 6 5 4 37 37 H 0.97010 * 119.99568 * 93.54478 * 9 7 6 38 38 H 0.96996 * 119.99905 * 355.38523 * 14 12 10 39 39 H 1.07994 * 120.04052 * 0.02562 * 16 15 14 40 40 H 1.07999 * 119.95771 * 180.21493 * 17 16 15 41 41 H 1.09000 * 109.47498 * 30.02270 * 19 18 17 42 42 H 1.09001 * 109.47095 * 150.02557 * 19 18 17 43 43 H 0.96995 * 120.00315 * 179.97438 * 23 22 20 44 44 H 1.08009 * 119.95838 * 179.97438 * 28 18 17 45 45 H 1.08003 * 120.03807 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0712 -0.7810 1.2179 5 8 3.2421 -1.4729 0.7239 6 6 2.8758 -1.9422 -0.5918 7 6 2.0716 -0.7814 -1.2179 8 1 2.7221 -0.1472 -1.8201 9 7 0.9683 -1.3007 -2.0300 10 6 1.1773 -1.6277 -3.3206 11 8 2.2796 -1.4925 -3.8100 12 6 0.0527 -2.1576 -4.1483 13 8 -1.0497 -2.2933 -3.6587 14 7 0.2617 -2.4842 -5.4391 15 6 -0.7636 -3.0698 -6.1864 16 6 -0.4642 -4.0216 -7.1531 17 6 -1.4804 -4.6011 -7.8872 18 6 -2.7938 -4.2282 -7.6672 19 6 -3.8994 -4.8589 -8.4739 20 6 -4.1401 -4.0448 -9.7190 21 1 -3.5511 -3.1594 -9.9076 22 6 -5.1116 -4.4308 -10.6181 23 7 -5.8285 -5.5092 -10.3888 24 14 -5.4095 -3.4221 -12.1618 25 1 -4.1665 -3.3799 -12.9731 26 1 -6.4990 -4.0435 -12.9566 27 1 -5.8001 -2.0404 -11.7826 28 6 -3.0948 -3.2774 -6.7091 29 6 -2.0841 -2.6974 -5.9682 30 1 -0.3633 -1.0265 0.0480 31 1 -0.3634 0.5549 0.8649 32 1 -0.3633 0.4716 -0.9131 33 1 2.3464 -0.0937 2.0178 34 1 1.3278 -1.4954 1.5714 35 1 2.2564 -2.8360 -0.5171 36 1 3.7679 -2.1480 -1.1833 37 1 0.0873 -1.4091 -1.6387 38 1 1.1238 -2.3128 -5.8493 39 1 0.5616 -4.3106 -7.3279 40 1 -1.2487 -5.3437 -8.6364 41 1 -3.6128 -5.8730 -8.7527 42 1 -4.8116 -4.8899 -7.8781 43 1 -6.5123 -5.7806 -11.0210 44 1 -4.1217 -2.9882 -6.5403 45 1 -2.3199 -1.9547 -5.2204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337618339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:47 Heat of formation + Delta-G solvation = -84.867687 kcal Electronic energy + Delta-G solvation = -27313.766367 eV Core-core repulsion = 23296.369883 eV Total energy + Delta-G solvation = -4017.396484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36315 -40.30842 -39.04048 -38.02509 -35.84988 -34.96107 -33.08929 -32.85870 -30.64714 -30.40510 -29.59039 -27.11723 -26.90469 -25.15012 -23.48683 -22.81939 -22.47120 -21.07258 -20.42110 -20.18514 -19.05853 -17.45899 -17.16807 -16.56240 -16.38366 -16.31887 -16.22507 -15.77192 -15.24058 -15.06386 -14.71875 -14.39260 -14.28805 -14.15381 -13.75527 -13.30396 -13.15324 -12.95102 -12.90319 -12.68429 -12.60637 -12.11138 -11.92329 -11.72843 -11.61507 -11.43818 -11.33339 -11.30632 -10.86192 -10.63778 -10.43595 -10.40628 -10.12479 -9.85772 -9.71818 -9.47455 -9.35836 -8.44720 -8.38181 -7.53307 -6.06070 -4.10396 0.99084 1.86389 1.96490 2.09626 2.95207 3.24504 3.30695 3.35012 3.38047 3.56004 3.76706 4.10630 4.15099 4.28518 4.33869 4.50193 4.51333 4.65519 4.75977 4.96798 5.05814 5.18723 5.27703 5.28774 5.33526 5.35128 5.42778 5.46900 5.56759 5.69689 5.76420 5.92274 5.98622 6.10877 6.19915 6.48630 6.55950 6.70890 6.76136 7.07931 7.11548 7.20067 7.42695 7.47100 7.60009 7.80457 7.81392 7.89303 8.28857 8.94567 9.53450 11.03528 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.001910 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.432109 B =14657.283886 C =14914.700075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 H 0.098 0.902 4 C 0.046 3.954 5 O -0.369 6.369 6 C 0.034 3.966 7 C 0.114 3.886 8 H 0.109 0.891 9 N -0.695 5.695 10 C 0.512 3.488 11 O -0.516 6.516 12 C 0.501 3.499 13 O -0.503 6.503 14 N -0.632 5.632 15 C 0.091 3.909 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.035 4.035 19 C 0.047 3.953 20 C -0.513 4.513 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.896 3.104 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.110 4.110 29 C -0.113 4.113 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.417 0.583 38 H 0.418 0.582 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.847 10.013 21.676 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 H 0.117 0.883 4 C -0.031 4.031 5 O -0.287 6.287 6 C -0.044 4.044 7 C 0.008 3.992 8 H 0.127 0.873 9 N -0.353 5.353 10 C 0.293 3.707 11 O -0.391 6.391 12 C 0.282 3.718 13 O -0.378 6.378 14 N -0.278 5.278 15 C -0.001 4.001 16 C -0.154 4.154 17 C -0.127 4.127 18 C -0.036 4.036 19 C 0.010 3.990 20 C -0.551 4.551 21 H 0.075 0.925 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.724 3.276 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.129 4.129 29 C -0.133 4.133 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.258 0.742 38 H 0.255 0.745 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.940 9.875 21.756 28.722 hybrid contribution -0.364 0.581 -1.062 1.264 sum 15.577 10.456 20.695 27.932 Atomic orbital electron populations 1.21829 0.93388 1.02608 1.03456 1.22799 0.97476 1.00909 0.94034 0.88332 1.23620 0.88153 0.95184 0.96145 1.89244 1.34935 1.73883 1.30602 1.23881 1.00429 0.96089 0.83997 1.22473 0.88491 0.95778 0.92418 0.87307 1.46005 1.14798 1.64327 1.10204 1.20178 0.88685 0.78760 0.83074 1.90782 1.24631 1.51679 1.71962 1.20021 0.88655 0.80094 0.82986 1.90789 1.24051 1.51189 1.71735 1.42989 1.16397 1.58661 1.09716 1.17522 0.87691 0.98190 0.96665 1.20799 0.99507 0.96863 0.98191 1.20920 0.92043 1.00486 0.99295 1.20794 0.95932 0.93841 0.93008 1.18372 0.90959 0.95913 0.93749 1.21012 1.18815 1.10643 1.04637 0.92480 1.25015 0.95819 0.95200 0.98306 1.69941 1.22566 1.23969 1.36758 0.86587 0.77852 0.80322 0.82860 1.20163 1.21240 1.20170 1.21025 0.98935 0.97057 0.95848 1.21116 0.91071 1.00700 1.00407 0.91822 0.91064 0.91209 0.88505 0.91604 0.91517 0.87962 0.74231 0.74515 0.86447 0.85720 0.95200 0.95190 0.92753 0.85849 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 7.79 37.16 0.29 -0.38 16 2 C -0.13 -0.66 3.72 -89.05 -0.33 -0.99 16 3 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 4 C 0.05 0.25 7.19 37.93 0.27 0.52 16 5 O -0.37 -3.10 11.67 -35.23 -0.41 -3.51 16 6 C 0.03 0.26 7.34 37.93 0.28 0.54 16 7 C 0.11 0.80 3.39 -66.36 -0.23 0.57 16 8 H 0.11 0.84 7.67 -51.93 -0.40 0.44 16 9 N -0.70 -5.65 4.64 -52.75 -0.24 -5.89 16 10 C 0.51 5.50 7.88 -11.64 -0.09 5.41 16 11 O -0.52 -6.33 16.19 5.48 0.09 -6.24 16 12 C 0.50 6.38 7.73 -11.63 -0.09 6.29 16 13 O -0.50 -7.38 13.91 5.47 0.08 -7.31 16 14 N -0.63 -8.17 5.32 -10.29 -0.05 -8.23 16 15 C 0.09 1.45 6.30 -83.75 -0.53 0.92 16 16 C -0.13 -2.12 9.97 -39.38 -0.39 -2.51 16 17 C -0.11 -2.03 9.69 -39.61 -0.38 -2.42 16 18 C -0.04 -0.75 5.07 -104.58 -0.53 -1.28 16 19 C 0.05 1.18 5.10 -29.04 -0.15 1.04 16 20 C -0.51 -14.12 9.09 -34.44 -0.31 -14.43 16 21 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16 29 C -0.11 -1.98 8.70 -39.38 -0.34 -2.32 16 30 H 0.06 0.27 6.99 -51.93 -0.36 -0.09 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.35 7.74 -51.93 -0.40 -0.06 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.31 7.82 -51.93 -0.41 -0.09 16 35 H 0.07 0.50 8.06 -51.93 -0.42 0.09 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.42 3.06 5.30 -40.82 -0.22 2.84 16 38 H 0.42 4.51 8.30 -40.82 -0.34 4.18 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 41 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 45 H 0.13 2.16 6.22 -52.48 -0.33 1.84 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -31.82 377.04 -8.37 -40.19 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.21 Total: 4.41 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.02 Total: -10.05 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.44 Total: -39.48 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.25 Total: -17.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.82 -8.37 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.676 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds