Wall clock time and date at job start Tue Mar 31 2020 17:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.56424 * 2 1 4 4 C 1.54478 * 110.50890 * 122.67099 * 2 1 3 5 5 O 1.44695 * 104.83738 * 142.62464 * 4 2 1 6 6 C 1.44418 * 105.14074 * 319.52161 * 5 4 2 7 7 C 1.54478 * 104.89984 * 40.49594 * 6 5 4 8 8 H 1.08994 * 110.51362 * 94.61202 * 7 6 5 9 9 N 1.46504 * 110.51103 * 217.18268 * 7 6 5 10 10 C 1.34771 * 120.00502 * 273.54560 * 9 7 6 11 11 O 1.21366 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.49349 * 120.00482 * 179.97438 * 10 9 7 13 13 O 1.21380 * 119.99800 * 0.02562 * 12 10 9 14 14 N 1.34778 * 119.99967 * 179.97438 * 12 10 9 15 15 C 1.39730 * 119.99799 * 175.37832 * 14 12 10 16 16 C 1.38927 * 120.07667 * 214.82043 * 15 14 12 17 17 C 1.38101 * 119.92049 * 179.81703 * 16 15 14 18 18 C 1.38290 * 120.07604 * 0.44045 * 17 16 15 19 19 C 1.50695 * 119.92075 * 179.76689 * 18 17 16 20 20 C 1.50702 * 109.47315 * 270.02056 * 19 18 17 21 21 H 1.07999 * 120.00092 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00271 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99790 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00163 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47192 * 60.00509 * 24 22 20 26 26 H 1.48495 * 109.47222 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47356 * 300.00605 * 24 22 20 28 28 C 1.38295 * 120.15200 * 359.79475 * 18 17 16 29 29 C 1.38091 * 120.07771 * 359.97438 * 28 18 17 30 30 H 1.08994 * 109.47083 * 182.67659 * 1 2 3 31 31 H 1.08997 * 109.47296 * 302.68485 * 1 2 3 32 32 H 1.09004 * 109.46665 * 62.68508 * 1 2 3 33 33 H 1.08993 * 110.37664 * 261.45628 * 4 2 1 34 34 H 1.08997 * 110.37042 * 23.68858 * 4 2 1 35 35 H 1.09000 * 110.37334 * 281.61081 * 6 5 4 36 36 H 1.09000 * 110.37564 * 159.37901 * 6 5 4 37 37 H 0.97010 * 119.99568 * 93.54478 * 9 7 6 38 38 H 0.96996 * 119.99905 * 355.38523 * 14 12 10 39 39 H 1.07994 * 120.04052 * 0.02562 * 16 15 14 40 40 H 1.07999 * 119.95771 * 180.21493 * 17 16 15 41 41 H 1.09000 * 109.47498 * 30.02270 * 19 18 17 42 42 H 1.09001 * 109.47095 * 150.02557 * 19 18 17 43 43 H 0.96995 * 120.00315 * 179.97438 * 23 22 20 44 44 H 1.08009 * 119.95838 * 179.97438 * 28 18 17 45 45 H 1.08003 * 120.03807 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0712 -0.7810 1.2179 5 8 3.2421 -1.4729 0.7239 6 6 2.8758 -1.9422 -0.5918 7 6 2.0716 -0.7814 -1.2179 8 1 2.7221 -0.1472 -1.8201 9 7 0.9683 -1.3007 -2.0300 10 6 1.1773 -1.6277 -3.3206 11 8 2.2796 -1.4925 -3.8100 12 6 0.0527 -2.1576 -4.1483 13 8 -1.0497 -2.2933 -3.6587 14 7 0.2617 -2.4842 -5.4391 15 6 -0.7636 -3.0698 -6.1864 16 6 -0.4642 -4.0216 -7.1531 17 6 -1.4804 -4.6011 -7.8872 18 6 -2.7938 -4.2282 -7.6672 19 6 -3.8994 -4.8589 -8.4739 20 6 -4.1401 -4.0448 -9.7190 21 1 -3.5511 -3.1594 -9.9076 22 6 -5.1116 -4.4308 -10.6181 23 7 -5.8285 -5.5092 -10.3888 24 14 -5.4095 -3.4221 -12.1618 25 1 -4.1665 -3.3799 -12.9731 26 1 -6.4990 -4.0435 -12.9566 27 1 -5.8001 -2.0404 -11.7826 28 6 -3.0948 -3.2774 -6.7091 29 6 -2.0841 -2.6974 -5.9682 30 1 -0.3633 -1.0265 0.0480 31 1 -0.3634 0.5549 0.8649 32 1 -0.3633 0.4716 -0.9131 33 1 2.3464 -0.0937 2.0178 34 1 1.3278 -1.4954 1.5714 35 1 2.2564 -2.8360 -0.5171 36 1 3.7679 -2.1480 -1.1833 37 1 0.0873 -1.4091 -1.6387 38 1 1.1238 -2.3128 -5.8493 39 1 0.5616 -4.3106 -7.3279 40 1 -1.2487 -5.3437 -8.6364 41 1 -3.6128 -5.8730 -8.7527 42 1 -4.8116 -4.8899 -7.8781 43 1 -6.5123 -5.7806 -11.0210 44 1 -4.1217 -2.9882 -6.5403 45 1 -2.3199 -1.9547 -5.2204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337618339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:46 Heat of formation + Delta-G solvation = -105.996896 kcal Electronic energy + Delta-G solvation = -27314.682598 eV Core-core repulsion = 23296.369883 eV Total energy + Delta-G solvation = -4018.312715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.28051 -41.14392 -40.03778 -39.20421 -36.78676 -36.03652 -34.98547 -33.43675 -32.31695 -31.82603 -30.24687 -28.74864 -27.29889 -26.39645 -24.83033 -23.93019 -23.66090 -22.23833 -21.45704 -21.00639 -20.02664 -18.53757 -18.46821 -17.99358 -17.26110 -17.21156 -17.09383 -16.77112 -16.39144 -15.98334 -15.95501 -15.87504 -15.34478 -14.87603 -14.66051 -14.59400 -14.49417 -14.31883 -13.73921 -13.70689 -13.35281 -13.30884 -13.23963 -13.19518 -12.91153 -12.59408 -12.44420 -12.16131 -12.06731 -12.03360 -11.77626 -11.67824 -11.51781 -11.13692 -10.93930 -10.76743 -10.58769 -10.41482 -9.80304 -8.99963 -8.18090 -6.32001 -0.04989 0.53716 0.60887 1.10746 1.41157 1.43504 1.51741 1.97040 2.40020 2.40725 2.93675 3.00136 3.11965 3.21814 3.33598 3.66344 3.79245 4.01990 4.03502 4.10870 4.15121 4.36085 4.38518 4.52470 4.56976 4.58901 4.62236 4.63662 4.68189 4.79996 4.90314 4.99175 5.09690 5.12185 5.24106 5.25159 5.27958 5.37966 5.38723 5.54512 5.68275 5.75415 5.80157 6.05832 6.07775 6.19572 6.22484 6.58638 6.77724 6.80541 7.36344 8.90170 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.001910 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.432109 B =14657.283886 C =14914.700075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 H 0.110 0.890 4 C 0.041 3.959 5 O -0.389 6.389 6 C 0.035 3.965 7 C 0.112 3.888 8 H 0.105 0.895 9 N -0.680 5.680 10 C 0.520 3.480 11 O -0.530 6.530 12 C 0.504 3.496 13 O -0.522 6.522 14 N -0.626 5.626 15 C 0.107 3.893 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.068 4.068 19 C 0.056 3.944 20 C -0.528 4.528 21 H 0.056 0.944 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.282 1.282 27 H -0.269 1.269 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.422 0.578 38 H 0.431 0.569 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.007 0.993 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.116 0.884 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.645 11.726 22.516 30.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 H 0.129 0.871 4 C -0.035 4.035 5 O -0.308 6.308 6 C -0.043 4.043 7 C 0.007 3.993 8 H 0.123 0.877 9 N -0.337 5.337 10 C 0.300 3.700 11 O -0.407 6.407 12 C 0.286 3.714 13 O -0.397 6.397 14 N -0.273 5.273 15 C 0.013 3.987 16 C -0.140 4.140 17 C -0.132 4.132 18 C -0.068 4.068 19 C 0.019 3.981 20 C -0.566 4.566 21 H 0.074 0.926 22 C -0.195 4.195 23 N -0.570 5.570 24 Si 0.789 3.211 25 H -0.191 1.191 26 H -0.207 1.207 27 H -0.194 1.194 28 C -0.138 4.138 29 C -0.135 4.135 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.264 0.736 38 H 0.271 0.729 39 H 0.175 0.825 40 H 0.146 0.854 41 H 0.026 0.974 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.761 11.607 22.632 31.022 hybrid contribution -0.853 0.066 -1.158 1.439 sum 16.908 11.674 21.474 29.720 Atomic orbital electron populations 1.21838 0.92771 1.02796 1.03871 1.22788 0.97873 1.01074 0.92582 0.87137 1.23819 0.87522 0.95525 0.96616 1.89225 1.36434 1.74320 1.30785 1.23839 1.00271 0.96228 0.84005 1.22572 0.88069 0.95761 0.92879 0.87744 1.45992 1.15445 1.63009 1.09303 1.19750 0.87671 0.78968 0.83594 1.90789 1.24802 1.52711 1.72370 1.20391 0.88897 0.79259 0.82881 1.90788 1.25061 1.51770 1.72102 1.42922 1.16234 1.58383 1.09760 1.17581 0.87809 0.97217 0.96044 1.21059 1.00598 0.95579 0.96777 1.20985 0.91579 1.00813 0.99861 1.20481 0.95936 0.95880 0.94511 1.18110 0.91481 0.94974 0.93548 1.21352 1.18839 1.10755 1.05621 0.92572 1.25930 0.95517 0.96308 1.01718 1.70070 1.23214 1.25619 1.38062 0.85500 0.78055 0.78763 0.78745 1.19132 1.20703 1.19413 1.20967 0.99390 0.97267 0.96161 1.21159 0.91451 1.00735 1.00195 0.91857 0.89599 0.91769 0.86880 0.90958 0.91596 0.88464 0.73604 0.72937 0.82520 0.85429 0.97430 0.97933 0.92599 0.86582 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 7.79 71.98 0.56 -0.41 16 2 C -0.12 -0.94 3.72 -9.78 -0.04 -0.97 16 3 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 4 C 0.04 0.35 7.19 72.48 0.52 0.88 16 5 O -0.39 -5.96 11.67 -148.98 -1.74 -7.70 16 6 C 0.03 0.48 7.34 72.48 0.53 1.02 16 7 C 0.11 1.37 3.39 46.01 0.16 1.52 16 8 H 0.10 1.43 7.67 -2.39 -0.02 1.41 16 9 N -0.68 -9.76 4.64 -439.16 -2.04 -11.80 16 10 C 0.52 10.14 7.88 87.24 0.69 10.82 16 11 O -0.53 -11.92 16.19 -3.30 -0.05 -11.98 16 12 C 0.50 11.77 7.73 87.24 0.67 12.45 16 13 O -0.52 -14.43 13.91 -3.34 -0.05 -14.48 16 14 N -0.63 -14.58 5.32 -304.83 -1.62 -16.20 16 15 C 0.11 3.17 6.30 38.21 0.24 3.41 16 16 C -0.12 -3.54 9.97 22.40 0.22 -3.31 16 17 C -0.11 -4.20 9.69 22.25 0.22 -3.99 16 18 C -0.07 -2.95 5.07 -19.84 -0.10 -3.05 16 19 C 0.06 2.97 5.10 29.10 0.15 3.12 16 20 C -0.53 -29.89 9.09 25.60 0.23 -29.65 16 21 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 22 C 0.00 0.20 5.46 84.66 0.46 0.66 16 23 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 24 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 C -0.12 -4.76 9.69 22.25 0.22 -4.54 16 29 C -0.12 -3.95 8.70 22.40 0.19 -3.76 16 30 H 0.06 0.41 6.99 -2.39 -0.02 0.39 16 31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.50 7.74 -2.39 -0.02 0.48 16 33 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.53 7.82 -2.39 -0.02 0.51 16 35 H 0.07 0.91 8.06 -2.39 -0.02 0.89 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.42 5.37 5.30 -92.70 -0.49 4.88 16 38 H 0.43 7.98 8.30 -92.71 -0.77 7.21 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 41 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 42 H 0.00 0.13 8.08 -2.39 -0.02 0.12 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 45 H 0.14 4.44 6.22 -2.91 -0.02 4.42 16 Total: -1.00 -69.58 377.04 1.51 -68.07 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.23 Total: 19.42 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.93 Total: -15.82 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.38 Total: -83.57 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.84 Total: -34.16 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.58 1.51 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337618339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.928 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds