Wall clock time and date at job start Tue Mar 31 2020 17:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.81291 * 2 1 4 4 C 1.54707 * 110.74920 * 236.68571 * 2 1 3 5 5 C 1.51666 * 101.93330 * 266.99690 * 4 2 1 6 6 C 1.37665 * 132.10256 * 164.58642 * 5 4 2 7 7 C 1.38999 * 119.91871 * 180.35401 * 6 5 4 8 8 N 1.39863 * 120.19431 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99937 * 324.93353 * 8 7 6 10 10 O 1.21390 * 120.00084 * 4.63696 * 9 8 7 11 11 C 1.49335 * 120.00166 * 184.64002 * 9 8 7 12 12 O 1.21366 * 119.99915 * 359.97438 * 11 9 8 13 13 N 1.34775 * 120.00071 * 179.97438 * 11 9 8 14 14 C 1.46504 * 119.99742 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46845 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47503 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00240 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00029 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00115 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47400 * 89.99481 * 21 19 17 23 23 H 1.48498 * 109.47587 * 209.99772 * 21 19 17 24 24 H 1.48501 * 109.47126 * 329.99528 * 21 19 17 25 25 C 1.38942 * 119.61136 * 0.03206 * 7 6 5 26 26 C 1.37834 * 120.26391 * 359.79035 * 25 7 6 27 27 C 1.38915 * 107.04175 * 344.60218 * 5 4 2 28 28 O 1.36215 * 111.20597 * 358.92103 * 27 5 4 29 29 H 1.09000 * 109.47496 * 183.31016 * 1 2 3 30 30 H 1.09000 * 109.47447 * 303.31798 * 1 2 3 31 31 H 1.09002 * 109.47122 * 63.31369 * 1 2 3 32 32 H 1.08999 * 110.93389 * 148.83679 * 4 2 1 33 33 H 1.08994 * 110.93792 * 25.15343 * 4 2 1 34 34 H 1.07998 * 120.04350 * 0.34866 * 6 5 4 35 35 H 0.96998 * 120.00200 * 144.93252 * 8 7 6 36 36 H 0.97001 * 120.00160 * 0.02562 * 13 11 9 37 37 H 1.09004 * 109.46730 * 299.99918 * 14 13 11 38 38 H 1.08997 * 109.47494 * 60.00501 * 14 13 11 39 39 H 1.08994 * 109.47039 * 299.99426 * 15 14 13 40 40 H 1.08999 * 109.47572 * 59.99945 * 15 14 13 41 41 H 1.09007 * 109.46867 * 299.99854 * 16 15 14 42 42 H 1.09007 * 109.47211 * 59.99277 * 16 15 14 43 43 H 0.97000 * 120.00051 * 179.97438 * 20 19 17 44 44 H 1.07993 * 119.86375 * 179.81136 * 25 7 6 45 45 H 1.08000 * 119.82300 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0780 -0.7946 -1.2090 5 6 2.2618 -2.1789 -0.6172 6 6 2.4515 -3.4129 -1.1971 7 6 2.5865 -4.5415 -0.3971 8 7 2.7799 -5.7980 -0.9802 9 6 2.1789 -6.0985 -2.1486 10 8 1.5384 -5.2517 -2.7370 11 6 2.3008 -7.4731 -2.7192 12 8 2.9415 -8.3196 -2.1310 13 7 1.6994 -7.7737 -3.8872 14 6 1.8185 -9.1224 -4.4467 15 6 1.0495 -9.1965 -5.7673 16 6 1.1734 -10.6052 -6.3513 17 6 0.4154 -10.6784 -7.6517 18 1 -0.1032 -9.8074 -8.0242 19 6 0.3840 -11.8573 -8.3659 20 7 -0.2779 -11.9213 -9.5006 21 14 1.2804 -13.3641 -7.7214 22 1 0.3654 -14.1525 -6.8574 23 1 1.7264 -14.2013 -8.8639 24 1 2.4621 -12.9363 -6.9303 25 6 2.5279 -4.4142 0.9852 26 6 2.3415 -3.1761 1.5615 27 6 2.2096 -2.0413 0.7642 28 8 2.0392 -0.7385 1.1235 29 1 -0.3634 -1.0259 0.0593 30 1 -0.3634 0.5645 0.8587 31 1 -0.3633 0.4615 -0.9182 32 1 3.0306 -0.3849 -1.5448 33 1 1.3544 -0.8124 -2.0238 34 1 2.4953 -3.5040 -2.2724 35 1 3.3466 -6.4532 -0.5438 36 1 1.1876 -7.0970 -4.3575 37 1 2.8695 -9.3501 -4.6253 38 1 1.4045 -9.8453 -3.7437 39 1 -0.0014 -8.9687 -5.5890 40 1 1.4638 -8.4737 -6.4702 41 1 2.2243 -10.8335 -6.5295 42 1 0.7588 -11.3278 -5.6483 43 1 -0.2997 -12.7506 -10.0033 44 1 2.6292 -5.2888 1.6105 45 1 2.2967 -3.0854 2.6367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337795784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:12 Heat of formation + Delta-G solvation = -81.448401 kcal Electronic energy + Delta-G solvation = -26786.854356 eV Core-core repulsion = 22769.606144 eV Total energy + Delta-G solvation = -4017.248212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.73684 -40.93957 -39.14388 -37.70476 -35.94127 -34.72990 -33.53687 -33.36287 -31.53704 -31.21159 -29.68064 -27.71818 -27.25300 -25.17011 -23.34929 -22.50732 -21.98847 -21.74273 -20.84066 -20.18355 -18.79613 -17.81540 -17.45035 -16.93924 -16.75546 -16.42963 -16.33901 -15.96038 -15.36210 -14.96299 -14.65849 -14.34532 -14.21371 -14.04790 -13.84524 -13.75722 -13.51253 -13.19806 -13.03242 -12.75556 -12.67737 -12.51229 -12.14386 -12.01718 -11.93677 -11.69729 -11.60997 -11.18233 -11.11079 -10.95222 -10.28298 -10.20297 -10.02659 -9.82686 -9.62645 -9.27274 -9.24274 -9.16844 -8.58767 -8.11375 -6.09123 -4.08330 0.68821 0.93967 1.35099 2.10018 2.83588 2.99425 3.28428 3.32681 3.36292 3.39333 3.43890 3.97460 4.10421 4.31804 4.41153 4.41789 4.51785 4.67860 4.72510 4.83092 5.04498 5.13187 5.24460 5.26829 5.27120 5.37089 5.40302 5.50249 5.51057 5.60572 5.66472 5.86690 5.87458 5.92661 6.04306 6.06204 6.26734 6.33817 6.47313 6.69072 6.72271 6.81128 7.15982 7.20656 7.29667 7.50766 7.71753 7.84469 8.46891 8.94759 9.52552 11.04027 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.001766 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.256326 B =15848.620384 C =16688.876958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H 0.116 0.884 4 C -0.107 4.107 5 C -0.155 4.155 6 C -0.068 4.068 7 C 0.112 3.888 8 N -0.643 5.643 9 C 0.509 3.491 10 O -0.501 6.501 11 C 0.504 3.496 12 O -0.523 6.523 13 N -0.688 5.688 14 C 0.111 3.889 15 C -0.115 4.115 16 C -0.010 4.010 17 C -0.524 4.524 18 H 0.073 0.927 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.103 4.103 26 C -0.120 4.120 27 C 0.094 3.906 28 O -0.300 6.300 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.424 0.576 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.138 0.862 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 23.461 23.083 33.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 H 0.134 0.866 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.088 4.088 7 C 0.019 3.981 8 N -0.290 5.290 9 C 0.291 3.709 10 O -0.375 6.375 11 C 0.284 3.716 12 O -0.400 6.400 13 N -0.340 5.340 14 C -0.011 4.011 15 C -0.153 4.153 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.123 4.123 26 C -0.139 4.139 27 C 0.049 3.951 28 O -0.215 6.215 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.161 0.839 35 H 0.262 0.738 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.156 0.844 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.073 23.378 23.077 33.407 hybrid contribution 0.351 -0.915 0.020 0.981 sum 6.425 22.463 23.098 32.854 Atomic orbital electron populations 1.22257 0.94073 1.03463 1.03164 1.23436 0.94849 0.96332 0.83251 0.86604 1.21886 1.02922 0.90988 0.98590 1.20595 1.06178 0.95116 0.93736 1.20390 0.98364 0.88948 1.01143 1.17469 1.04638 0.84285 0.91718 1.43042 1.48319 1.14853 1.22814 1.20487 0.79527 0.89255 0.81632 1.90771 1.39091 1.48945 1.58665 1.19762 0.81413 0.87683 0.82783 1.90781 1.40391 1.48976 1.59855 1.46016 1.51008 1.15639 1.21348 1.21889 1.01920 0.80821 0.96476 1.21749 0.99364 1.01292 0.92939 1.19505 0.97388 0.91316 0.96626 1.21079 1.32134 0.98768 1.04167 0.90935 1.25033 0.94951 0.98829 0.94678 1.69912 1.42149 1.27276 1.14696 0.86770 0.80817 0.83018 0.78644 1.20242 1.21346 1.18920 1.20649 1.01416 0.97546 0.92682 1.20003 1.05387 0.88709 0.99836 1.19582 0.97681 0.85176 0.92686 1.86894 1.80064 1.16448 1.38066 0.91706 0.91333 0.90519 0.88912 0.88636 0.83884 0.73779 0.75057 0.90951 0.90964 0.91779 0.91747 0.96216 0.96655 0.92659 0.84426 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 9.51 37.15 0.35 -0.64 16 2 C 0.08 0.50 4.32 -25.84 -0.11 0.39 16 3 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.74 6.65 -26.51 -0.18 -0.91 16 5 C -0.15 -1.48 6.26 -104.10 -0.65 -2.13 16 6 C -0.07 -0.72 8.69 -39.51 -0.34 -1.07 16 7 C 0.11 1.11 6.31 -83.65 -0.53 0.58 16 8 N -0.64 -6.32 5.33 -10.25 -0.05 -6.37 16 9 C 0.51 6.12 7.73 -11.64 -0.09 6.03 16 10 O -0.50 -6.78 13.92 5.46 0.08 -6.71 16 11 C 0.50 6.77 7.89 -11.64 -0.09 6.67 16 12 O -0.52 -7.99 16.48 5.48 0.09 -7.90 16 13 N -0.69 -9.26 5.55 -60.76 -0.34 -9.60 16 14 C 0.11 1.70 5.67 -4.04 -0.02 1.68 16 15 C -0.12 -2.07 5.27 -26.73 -0.14 -2.21 16 16 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 17 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 21 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 25 C -0.10 -0.83 9.94 -39.47 -0.39 -1.22 16 26 C -0.12 -1.01 10.05 -39.33 -0.40 -1.40 16 27 C 0.09 0.91 6.90 -38.93 -0.27 0.64 16 28 O -0.30 -2.79 10.82 -20.43 -0.22 -3.01 16 29 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.58 7.92 -51.93 -0.41 0.17 16 34 H 0.14 1.63 6.23 -52.49 -0.33 1.30 16 35 H 0.42 3.41 8.30 -40.82 -0.34 3.07 16 36 H 0.41 5.06 7.94 -40.82 -0.32 4.73 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.44 7.20 -51.92 -0.37 0.07 16 42 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -33.03 379.43 -8.43 -41.45 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.40 Total: 3.38 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.40 Total: -6.97 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.38 Total: -42.64 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.05 Total: -17.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.03 -8.43 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.994 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds