Wall clock time and date at job start Tue Mar 31 2020 17:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.81291 * 2 1 4 4 C 1.54707 * 110.74920 * 236.68571 * 2 1 3 5 5 C 1.51666 * 101.93330 * 266.99690 * 4 2 1 6 6 C 1.37665 * 132.10256 * 164.58642 * 5 4 2 7 7 C 1.38999 * 119.91871 * 180.35401 * 6 5 4 8 8 N 1.39863 * 120.19431 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99937 * 324.93353 * 8 7 6 10 10 O 1.21390 * 120.00084 * 4.63696 * 9 8 7 11 11 C 1.49335 * 120.00166 * 184.64002 * 9 8 7 12 12 O 1.21366 * 119.99915 * 359.97438 * 11 9 8 13 13 N 1.34775 * 120.00071 * 179.97438 * 11 9 8 14 14 C 1.46504 * 119.99742 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46845 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47503 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00240 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00029 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00115 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47400 * 89.99481 * 21 19 17 23 23 H 1.48498 * 109.47587 * 209.99772 * 21 19 17 24 24 H 1.48501 * 109.47126 * 329.99528 * 21 19 17 25 25 C 1.38942 * 119.61136 * 0.03206 * 7 6 5 26 26 C 1.37834 * 120.26391 * 359.79035 * 25 7 6 27 27 C 1.38915 * 107.04175 * 344.60218 * 5 4 2 28 28 O 1.36215 * 111.20597 * 358.92103 * 27 5 4 29 29 H 1.09000 * 109.47496 * 183.31016 * 1 2 3 30 30 H 1.09000 * 109.47447 * 303.31798 * 1 2 3 31 31 H 1.09002 * 109.47122 * 63.31369 * 1 2 3 32 32 H 1.08999 * 110.93389 * 148.83679 * 4 2 1 33 33 H 1.08994 * 110.93792 * 25.15343 * 4 2 1 34 34 H 1.07998 * 120.04350 * 0.34866 * 6 5 4 35 35 H 0.96998 * 120.00200 * 144.93252 * 8 7 6 36 36 H 0.97001 * 120.00160 * 0.02562 * 13 11 9 37 37 H 1.09004 * 109.46730 * 299.99918 * 14 13 11 38 38 H 1.08997 * 109.47494 * 60.00501 * 14 13 11 39 39 H 1.08994 * 109.47039 * 299.99426 * 15 14 13 40 40 H 1.08999 * 109.47572 * 59.99945 * 15 14 13 41 41 H 1.09007 * 109.46867 * 299.99854 * 16 15 14 42 42 H 1.09007 * 109.47211 * 59.99277 * 16 15 14 43 43 H 0.97000 * 120.00051 * 179.97438 * 20 19 17 44 44 H 1.07993 * 119.86375 * 179.81136 * 25 7 6 45 45 H 1.08000 * 119.82300 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0780 -0.7946 -1.2090 5 6 2.2618 -2.1789 -0.6172 6 6 2.4515 -3.4129 -1.1971 7 6 2.5865 -4.5415 -0.3971 8 7 2.7799 -5.7980 -0.9802 9 6 2.1789 -6.0985 -2.1486 10 8 1.5384 -5.2517 -2.7370 11 6 2.3008 -7.4731 -2.7192 12 8 2.9415 -8.3196 -2.1310 13 7 1.6994 -7.7737 -3.8872 14 6 1.8185 -9.1224 -4.4467 15 6 1.0495 -9.1965 -5.7673 16 6 1.1734 -10.6052 -6.3513 17 6 0.4154 -10.6784 -7.6517 18 1 -0.1032 -9.8074 -8.0242 19 6 0.3840 -11.8573 -8.3659 20 7 -0.2779 -11.9213 -9.5006 21 14 1.2804 -13.3641 -7.7214 22 1 0.3654 -14.1525 -6.8574 23 1 1.7264 -14.2013 -8.8639 24 1 2.4621 -12.9363 -6.9303 25 6 2.5279 -4.4142 0.9852 26 6 2.3415 -3.1761 1.5615 27 6 2.2096 -2.0413 0.7642 28 8 2.0392 -0.7385 1.1235 29 1 -0.3634 -1.0259 0.0593 30 1 -0.3634 0.5645 0.8587 31 1 -0.3633 0.4615 -0.9182 32 1 3.0306 -0.3849 -1.5448 33 1 1.3544 -0.8124 -2.0238 34 1 2.4953 -3.5040 -2.2724 35 1 3.3466 -6.4532 -0.5438 36 1 1.1876 -7.0970 -4.3575 37 1 2.8695 -9.3501 -4.6253 38 1 1.4045 -9.8453 -3.7437 39 1 -0.0014 -8.9687 -5.5890 40 1 1.4638 -8.4737 -6.4702 41 1 2.2243 -10.8335 -6.5295 42 1 0.7588 -11.3278 -5.6483 43 1 -0.2997 -12.7506 -10.0033 44 1 2.6292 -5.2888 1.6105 45 1 2.2967 -3.0854 2.6367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337795784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:09 Heat of formation + Delta-G solvation = -104.055396 kcal Electronic energy + Delta-G solvation = -26787.834669 eV Core-core repulsion = 22769.606144 eV Total energy + Delta-G solvation = -4018.228525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44959 -41.81971 -40.13054 -38.50643 -37.22851 -35.70318 -35.06615 -34.11540 -33.31413 -31.79478 -30.46176 -29.27495 -27.85003 -26.36067 -24.52133 -23.49686 -22.58623 -22.51167 -22.27904 -21.32925 -19.82281 -18.93686 -18.55214 -18.11317 -17.73813 -17.36454 -17.09195 -16.85422 -16.55546 -16.19577 -16.01412 -15.31277 -15.22418 -15.01156 -14.78712 -14.73187 -14.55459 -14.13274 -13.85878 -13.81621 -13.72744 -13.61621 -13.21798 -13.02705 -12.92136 -12.74387 -12.70006 -12.36054 -12.12676 -11.92522 -11.80551 -11.74202 -11.60554 -11.33396 -10.99609 -10.77123 -10.75199 -10.32548 -9.92449 -8.82589 -8.28232 -6.32705 -0.13540 0.25336 0.46585 1.14448 1.38792 1.40412 1.52027 1.97463 2.26417 2.37643 2.50097 2.64716 3.07563 3.23865 3.44418 3.58404 3.87259 3.94655 4.00866 4.10944 4.17459 4.19588 4.27125 4.47241 4.48144 4.55123 4.65857 4.75996 4.79977 4.86401 4.87959 4.93374 5.01587 5.02705 5.13337 5.18078 5.20599 5.23514 5.35770 5.46440 5.55618 5.56381 5.65359 5.83860 6.15669 6.23361 6.28122 6.60199 6.75751 6.80230 7.32043 8.88258 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.001766 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.256326 B =15848.620384 C =16688.876958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 H 0.141 0.859 4 C -0.107 4.107 5 C -0.167 4.167 6 C -0.085 4.085 7 C 0.095 3.905 8 N -0.628 5.628 9 C 0.513 3.487 10 O -0.520 6.520 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.686 5.686 14 C 0.124 3.876 15 C -0.105 4.105 16 C -0.011 4.011 17 C -0.533 4.533 18 H 0.034 0.966 19 C 0.002 3.998 20 N -0.952 5.952 21 Si 0.950 3.050 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.243 1.243 25 C -0.094 4.094 26 C -0.124 4.124 27 C 0.083 3.917 28 O -0.314 6.314 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.433 0.567 36 H 0.419 0.581 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.165 0.835 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 23.753 25.514 35.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.019 3.981 3 H 0.159 0.841 4 C -0.144 4.144 5 C -0.169 4.169 6 C -0.105 4.105 7 C 0.002 3.998 8 N -0.276 5.276 9 C 0.295 3.705 10 O -0.395 6.395 11 C 0.289 3.711 12 O -0.418 6.418 13 N -0.338 5.338 14 C 0.001 3.999 15 C -0.143 4.143 16 C -0.049 4.049 17 C -0.571 4.571 18 H 0.053 0.947 19 C -0.195 4.195 20 N -0.592 5.592 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.166 1.166 25 C -0.114 4.114 26 C -0.143 4.143 27 C 0.037 3.963 28 O -0.228 6.228 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.273 0.727 36 H 0.256 0.744 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.183 0.817 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.234 23.700 25.543 35.587 hybrid contribution -0.055 -0.867 -0.733 1.137 sum 7.179 22.832 24.810 34.473 Atomic orbital electron populations 1.22254 0.93707 1.02422 1.04311 1.23698 0.95212 0.97078 0.82135 0.84122 1.21984 1.03713 0.89764 0.98955 1.20857 1.05922 0.95806 0.94277 1.20388 0.99570 0.89879 1.00638 1.17650 1.05769 0.83872 0.92541 1.42924 1.47568 1.15112 1.21946 1.20182 0.79754 0.88380 0.82194 1.90775 1.40243 1.49142 1.59370 1.19905 0.80735 0.88048 0.82362 1.90772 1.41118 1.49631 1.60292 1.45876 1.51192 1.15143 1.21557 1.21585 1.01469 0.81825 0.95009 1.21526 0.99949 0.98569 0.94260 1.19465 0.96697 0.94370 0.94391 1.21480 1.31882 0.97492 1.06223 0.94735 1.26039 0.95991 1.02614 0.94856 1.70072 1.44291 1.28388 1.16495 0.85653 0.80202 0.78515 0.78259 1.19235 1.21268 1.16619 1.20918 0.99939 0.98471 0.92048 1.20338 1.04568 0.88430 1.00917 1.19867 0.97745 0.85746 0.92940 1.86874 1.80252 1.16399 1.39318 0.93702 0.90738 0.88903 0.87843 0.88103 0.85301 0.72709 0.74355 0.90698 0.90678 0.91824 0.91779 0.95593 0.95741 0.92557 0.81714 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.51 71.98 0.68 -1.06 16 2 C 0.07 0.84 4.32 31.17 0.13 0.98 16 3 H 0.14 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.11 -1.38 6.65 30.74 0.20 -1.18 16 5 C -0.17 -3.12 6.26 -19.53 -0.12 -3.24 16 6 C -0.08 -1.78 8.69 22.32 0.19 -1.59 16 7 C 0.09 1.79 6.31 38.21 0.24 2.03 16 8 N -0.63 -11.62 5.33 -304.67 -1.62 -13.24 16 9 C 0.51 11.94 7.73 87.23 0.67 12.61 16 10 O -0.52 -13.96 13.92 -3.37 -0.05 -14.01 16 11 C 0.51 13.01 7.89 87.23 0.69 13.70 16 12 O -0.54 -15.61 16.48 -3.30 -0.05 -15.67 16 13 N -0.69 -17.56 5.55 -464.51 -2.58 -20.14 16 14 C 0.12 3.57 5.67 86.38 0.49 4.06 16 15 C -0.11 -3.66 5.27 30.60 0.16 -3.50 16 16 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 17 C -0.53 -29.92 9.66 25.60 0.25 -29.68 16 18 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 19 C 0.00 0.10 5.47 84.65 0.46 0.56 16 20 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 21 Si 0.95 43.47 27.47 68.60 1.88 45.36 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.24 -10.18 6.54 99.48 0.65 -9.52 16 25 C -0.09 -1.34 9.94 22.34 0.22 -1.12 16 26 C -0.12 -1.86 10.05 22.43 0.23 -1.64 16 27 C 0.08 1.51 6.90 22.69 0.16 1.66 16 28 O -0.31 -5.45 10.82 -96.01 -1.04 -6.49 16 29 H 0.04 0.64 8.07 -2.39 -0.02 0.62 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.16 7.92 -2.39 -0.02 1.14 16 34 H 0.13 3.03 6.23 -2.91 -0.02 3.01 16 35 H 0.43 6.27 8.30 -92.71 -0.77 5.51 16 36 H 0.42 9.87 7.94 -92.71 -0.74 9.14 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.03 1.11 7.20 -2.38 -0.02 1.09 16 42 H 0.02 1.03 7.57 -2.38 -0.02 1.02 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 45 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -71.83 379.43 1.10 -70.73 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.53 Total: 20.24 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 4.78 Total: -7.78 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -3.90 Total: -92.39 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.14 Total: -36.16 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.36 kcal Total: -71.83 1.10 -70.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.323 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds