Wall clock time and date at job start Tue Mar 31 2020 17:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.66844 * 2 1 4 4 C 1.54702 * 110.75053 * 123.21243 * 2 1 3 5 5 C 1.51657 * 101.95127 * 93.24621 * 4 2 1 6 6 C 1.37671 * 132.08851 * 195.92514 * 5 4 2 7 7 C 1.38988 * 119.91858 * 179.30988 * 6 5 4 8 8 N 1.39872 * 120.20045 * 179.71995 * 7 6 5 9 9 C 1.34782 * 119.99619 * 326.72925 * 8 7 6 10 10 O 1.21390 * 119.99961 * 354.58560 * 9 8 7 11 11 C 1.49329 * 120.00091 * 174.86115 * 9 8 7 12 12 O 1.21365 * 119.99732 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00477 * 179.97438 * 11 9 8 14 14 C 1.46493 * 120.00387 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47052 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47137 * 180.02562 * 16 15 14 18 18 H 1.08011 * 120.00015 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00244 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00199 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47165 * 89.99911 * 21 19 17 23 23 H 1.48500 * 109.47143 * 210.00199 * 21 19 17 24 24 H 1.48499 * 109.46912 * 330.00019 * 21 19 17 25 25 C 1.38946 * 119.60971 * 359.44665 * 7 6 5 26 26 C 1.37834 * 120.26518 * 0.48075 * 25 7 6 27 27 C 1.38911 * 107.04891 * 15.15654 * 5 4 2 28 28 O 1.36216 * 111.18808 * 1.43722 * 27 5 4 29 29 H 1.08996 * 109.47482 * 296.78656 * 1 2 3 30 30 H 1.08999 * 109.47042 * 56.79088 * 1 2 3 31 31 H 1.09004 * 109.46787 * 176.78811 * 1 2 3 32 32 H 1.09000 * 110.93458 * 335.08428 * 4 2 1 33 33 H 1.08996 * 110.96732 * 211.42237 * 4 2 1 34 34 H 1.07997 * 120.04469 * 359.05086 * 6 5 4 35 35 H 0.96995 * 120.00348 * 146.72217 * 8 7 6 36 36 H 0.97004 * 119.99389 * 0.02562 * 13 11 9 37 37 H 1.09001 * 109.47527 * 300.00248 * 14 13 11 38 38 H 1.08998 * 109.47550 * 60.00447 * 14 13 11 39 39 H 1.08997 * 109.47222 * 299.99709 * 15 14 13 40 40 H 1.08995 * 109.47392 * 60.00177 * 15 14 13 41 41 H 1.08997 * 109.46692 * 299.99817 * 16 15 14 42 42 H 1.08995 * 109.47054 * 59.99754 * 16 15 14 43 43 H 0.96994 * 120.00417 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.86221 * 180.45952 * 25 7 6 45 45 H 1.08007 * 119.82216 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7924 1.2103 5 6 2.2679 -2.1763 0.6198 6 6 2.4515 -3.4106 1.2013 7 6 2.5876 -4.5399 0.4027 8 7 2.7802 -5.7959 0.9872 9 6 3.4745 -5.9047 2.1373 10 8 4.0158 -4.9284 2.6141 11 6 3.5829 -7.2274 2.8218 12 8 3.0462 -8.2046 2.3422 13 7 4.2775 -7.3363 3.9716 14 6 4.3843 -8.6340 4.6428 15 6 5.2188 -8.4824 5.9163 16 6 5.3308 -9.8379 6.6170 17 6 6.1522 -9.6885 7.8716 18 1 6.5544 -8.7232 8.1419 19 6 6.3911 -10.7841 8.6738 20 7 7.1083 -10.6538 9.7684 21 14 5.6960 -12.4536 8.2059 22 1 6.6742 -13.1758 7.3535 23 1 5.4335 -13.2430 9.4360 24 1 4.4275 -12.2691 7.4561 25 6 2.5256 -4.4146 -0.9797 26 6 2.3402 -3.1770 -1.5575 27 6 2.2128 -2.0407 -0.7616 28 8 2.0431 -0.7381 -1.1220 29 1 -0.3634 0.4631 0.9173 30 1 -0.3633 0.5628 -0.8598 31 1 -0.3633 -1.0261 -0.0576 32 1 1.3526 -0.8122 2.0237 33 1 3.0284 -0.3797 1.5487 34 1 2.4938 -3.5007 2.2767 35 1 2.4141 -6.5887 0.5649 36 1 4.7068 -6.5553 4.3547 37 1 3.3880 -8.9921 4.9022 38 1 4.8653 -9.3496 3.9760 39 1 6.2151 -8.1243 5.6573 40 1 4.7375 -7.7670 6.5831 41 1 4.3346 -10.1965 6.8759 42 1 5.8124 -10.5530 5.9500 43 1 7.2761 -11.4245 10.3330 44 1 2.6235 -5.2905 -1.6040 45 1 2.2927 -3.0880 -2.6328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337795785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:20 Heat of formation + Delta-G solvation = -81.870523 kcal Electronic energy + Delta-G solvation = -26752.584539 eV Core-core repulsion = 22735.318022 eV Total energy + Delta-G solvation = -4017.266517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74136 -40.94181 -39.14385 -37.71243 -35.94241 -34.73228 -33.54965 -33.36328 -31.53653 -31.23347 -29.67580 -27.72729 -27.27000 -25.18057 -23.35257 -22.50497 -22.00222 -21.75171 -20.83718 -20.17892 -18.79159 -17.78493 -17.52738 -16.97574 -16.76782 -16.38661 -16.25482 -15.99781 -15.31646 -15.01588 -14.69307 -14.35894 -14.22226 -14.08571 -13.86970 -13.67498 -13.55650 -13.17314 -12.97861 -12.75515 -12.69936 -12.61719 -12.14311 -12.01681 -11.94079 -11.66329 -11.63303 -11.24680 -11.15134 -10.95210 -10.28811 -10.18969 -10.02719 -9.82864 -9.63247 -9.27230 -9.24665 -9.16944 -8.58722 -8.10480 -6.09031 -4.08266 0.67489 0.92565 1.37010 2.10160 2.82286 2.97807 3.28457 3.35465 3.36265 3.39328 3.42260 3.96653 4.09589 4.31604 4.39930 4.41199 4.49908 4.65765 4.71510 4.81825 5.02014 5.10556 5.24547 5.24639 5.27322 5.36976 5.37975 5.49123 5.51051 5.59203 5.62002 5.84614 5.87460 5.92186 6.03242 6.06149 6.24962 6.33875 6.47296 6.69075 6.71999 6.80605 7.16039 7.20501 7.29755 7.50443 7.71803 7.84283 8.46950 8.94818 9.52623 11.04134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.001733 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.400901 B =16152.166749 C =16811.309321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H 0.116 0.884 4 C -0.107 4.107 5 C -0.152 4.152 6 C -0.070 4.070 7 C 0.117 3.883 8 N -0.644 5.644 9 C 0.508 3.492 10 O -0.499 6.499 11 C 0.504 3.496 12 O -0.523 6.523 13 N -0.688 5.688 14 C 0.111 3.889 15 C -0.116 4.116 16 C -0.010 4.010 17 C -0.524 4.524 18 H 0.073 0.927 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.105 4.105 26 C -0.118 4.118 27 C 0.093 3.907 28 O -0.300 6.300 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.424 0.576 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.138 0.862 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 20.051 -23.764 34.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 H 0.134 0.866 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.090 4.090 7 C 0.023 3.977 8 N -0.291 5.291 9 C 0.290 3.710 10 O -0.372 6.372 11 C 0.283 3.717 12 O -0.400 6.400 13 N -0.340 5.340 14 C -0.011 4.011 15 C -0.154 4.154 16 C -0.048 4.048 17 C -0.562 4.562 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.125 4.125 26 C -0.137 4.137 27 C 0.047 3.953 28 O -0.214 6.214 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.156 0.844 35 H 0.262 0.738 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.156 0.844 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.861 20.003 -23.734 33.993 hybrid contribution -0.208 -0.979 0.058 1.003 sum -14.069 19.024 -23.676 33.472 Atomic orbital electron populations 1.22253 0.94135 1.03343 1.03151 1.23425 0.94742 0.96429 0.83332 0.86607 1.21888 1.02999 0.91024 0.98461 1.20564 1.05937 0.95058 0.93789 1.20239 0.98330 0.89625 1.00780 1.17450 1.03638 0.84939 0.91675 1.43079 1.53129 1.08854 1.24022 1.20489 0.78875 0.89987 0.81610 1.90795 1.43454 1.38921 1.64077 1.19762 0.80962 0.88254 0.82684 1.90781 1.45994 1.38310 1.64914 1.46015 1.50968 1.14197 1.22826 1.21886 1.01696 0.82649 0.94874 1.21751 0.98726 1.01488 0.93391 1.19502 0.97342 0.91921 0.96060 1.21085 1.32315 0.97219 1.05556 0.90934 1.25031 0.94625 0.99085 0.94722 1.69908 1.39258 1.30872 1.13994 0.86772 0.80227 0.84201 0.78064 1.20244 1.21342 1.18920 1.20615 1.01845 0.97593 0.92449 1.20000 1.05242 0.88663 0.99835 1.19560 0.97907 0.85172 0.92669 1.86904 1.79923 1.16466 1.38097 0.90561 0.91325 0.91785 0.88780 0.88754 0.84371 0.73804 0.75051 0.90960 0.90952 0.91768 0.91751 0.96223 0.96649 0.92655 0.84419 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.51 37.16 0.35 -0.52 16 2 C 0.08 0.48 4.31 -25.84 -0.11 0.37 16 3 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.74 6.65 -26.52 -0.18 -0.91 16 5 C -0.15 -1.45 6.26 -104.11 -0.65 -2.11 16 6 C -0.07 -0.74 8.65 -39.51 -0.34 -1.08 16 7 C 0.12 1.15 6.29 -83.65 -0.53 0.63 16 8 N -0.64 -6.34 5.33 -10.25 -0.05 -6.39 16 9 C 0.51 6.16 7.63 -11.64 -0.09 6.07 16 10 O -0.50 -6.87 14.18 5.46 0.08 -6.79 16 11 C 0.50 6.78 7.88 -11.64 -0.09 6.69 16 12 O -0.52 -8.00 16.48 5.48 0.09 -7.91 16 13 N -0.69 -9.28 5.55 -60.77 -0.34 -9.62 16 14 C 0.11 1.70 5.67 -4.04 -0.02 1.68 16 15 C -0.12 -2.07 5.27 -26.73 -0.14 -2.22 16 16 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 17 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 18 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 21 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 25 C -0.10 -0.84 9.94 -39.47 -0.39 -1.23 16 26 C -0.12 -0.99 10.05 -39.33 -0.40 -1.38 16 27 C 0.09 0.89 6.91 -38.93 -0.27 0.62 16 28 O -0.30 -2.78 10.83 -20.43 -0.22 -3.00 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.09 0.52 7.92 -51.93 -0.41 0.11 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.14 1.57 6.43 -52.49 -0.34 1.23 16 35 H 0.42 3.40 8.30 -40.82 -0.34 3.06 16 36 H 0.41 5.08 7.94 -40.82 -0.32 4.76 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 42 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -33.21 379.73 -8.43 -41.63 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.41 Total: 3.15 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.40 Total: -6.79 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.38 Total: -42.70 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.21 -8.43 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.236 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds