Wall clock time and date at job start Tue Mar 31 2020 17:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.66844 * 2 1 4 4 C 1.54702 * 110.75053 * 123.21243 * 2 1 3 5 5 C 1.51657 * 101.95127 * 93.24621 * 4 2 1 6 6 C 1.37671 * 132.08851 * 195.92514 * 5 4 2 7 7 C 1.38988 * 119.91858 * 179.30988 * 6 5 4 8 8 N 1.39872 * 120.20045 * 179.71995 * 7 6 5 9 9 C 1.34782 * 119.99619 * 326.72925 * 8 7 6 10 10 O 1.21390 * 119.99961 * 354.58560 * 9 8 7 11 11 C 1.49329 * 120.00091 * 174.86115 * 9 8 7 12 12 O 1.21365 * 119.99732 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00477 * 179.97438 * 11 9 8 14 14 C 1.46493 * 120.00387 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47052 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47137 * 180.02562 * 16 15 14 18 18 H 1.08011 * 120.00015 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00244 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00199 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47165 * 89.99911 * 21 19 17 23 23 H 1.48500 * 109.47143 * 210.00199 * 21 19 17 24 24 H 1.48499 * 109.46912 * 330.00019 * 21 19 17 25 25 C 1.38946 * 119.60971 * 359.44665 * 7 6 5 26 26 C 1.37834 * 120.26518 * 0.48075 * 25 7 6 27 27 C 1.38911 * 107.04891 * 15.15654 * 5 4 2 28 28 O 1.36216 * 111.18808 * 1.43722 * 27 5 4 29 29 H 1.08996 * 109.47482 * 296.78656 * 1 2 3 30 30 H 1.08999 * 109.47042 * 56.79088 * 1 2 3 31 31 H 1.09004 * 109.46787 * 176.78811 * 1 2 3 32 32 H 1.09000 * 110.93458 * 335.08428 * 4 2 1 33 33 H 1.08996 * 110.96732 * 211.42237 * 4 2 1 34 34 H 1.07997 * 120.04469 * 359.05086 * 6 5 4 35 35 H 0.96995 * 120.00348 * 146.72217 * 8 7 6 36 36 H 0.97004 * 119.99389 * 0.02562 * 13 11 9 37 37 H 1.09001 * 109.47527 * 300.00248 * 14 13 11 38 38 H 1.08998 * 109.47550 * 60.00447 * 14 13 11 39 39 H 1.08997 * 109.47222 * 299.99709 * 15 14 13 40 40 H 1.08995 * 109.47392 * 60.00177 * 15 14 13 41 41 H 1.08997 * 109.46692 * 299.99817 * 16 15 14 42 42 H 1.08995 * 109.47054 * 59.99754 * 16 15 14 43 43 H 0.96994 * 120.00417 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.86221 * 180.45952 * 25 7 6 45 45 H 1.08007 * 119.82216 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7924 1.2103 5 6 2.2679 -2.1763 0.6198 6 6 2.4515 -3.4106 1.2013 7 6 2.5876 -4.5399 0.4027 8 7 2.7802 -5.7959 0.9872 9 6 3.4745 -5.9047 2.1373 10 8 4.0158 -4.9284 2.6141 11 6 3.5829 -7.2274 2.8218 12 8 3.0462 -8.2046 2.3422 13 7 4.2775 -7.3363 3.9716 14 6 4.3843 -8.6340 4.6428 15 6 5.2188 -8.4824 5.9163 16 6 5.3308 -9.8379 6.6170 17 6 6.1522 -9.6885 7.8716 18 1 6.5544 -8.7232 8.1419 19 6 6.3911 -10.7841 8.6738 20 7 7.1083 -10.6538 9.7684 21 14 5.6960 -12.4536 8.2059 22 1 6.6742 -13.1758 7.3535 23 1 5.4335 -13.2430 9.4360 24 1 4.4275 -12.2691 7.4561 25 6 2.5256 -4.4146 -0.9797 26 6 2.3402 -3.1770 -1.5575 27 6 2.2128 -2.0407 -0.7616 28 8 2.0431 -0.7381 -1.1220 29 1 -0.3634 0.4631 0.9173 30 1 -0.3633 0.5628 -0.8598 31 1 -0.3633 -1.0261 -0.0576 32 1 1.3526 -0.8122 2.0237 33 1 3.0284 -0.3797 1.5487 34 1 2.4938 -3.5007 2.2767 35 1 2.4141 -6.5887 0.5649 36 1 4.7068 -6.5553 4.3547 37 1 3.3880 -8.9921 4.9022 38 1 4.8653 -9.3496 3.9760 39 1 6.2151 -8.1243 5.6573 40 1 4.7375 -7.7670 6.5831 41 1 4.3346 -10.1965 6.8759 42 1 5.8124 -10.5530 5.9500 43 1 7.2761 -11.4245 10.3330 44 1 2.6235 -5.2905 -1.6040 45 1 2.2927 -3.0880 -2.6328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337795785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:18 Heat of formation + Delta-G solvation = -104.672739 kcal Electronic energy + Delta-G solvation = -26753.573317 eV Core-core repulsion = 22735.318022 eV Total energy + Delta-G solvation = -4018.255295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.45240 -41.82381 -40.13161 -38.51611 -37.23122 -35.70620 -35.06852 -34.12035 -33.31621 -31.79805 -30.45488 -29.28136 -27.85438 -26.36851 -24.52987 -23.48336 -22.60438 -22.51012 -22.28116 -21.32189 -19.82289 -18.93757 -18.52379 -18.19305 -17.76834 -17.28112 -17.12170 -16.85495 -16.48164 -16.20074 -16.04311 -15.32580 -15.22606 -15.11531 -14.78152 -14.67724 -14.54636 -14.15595 -13.85892 -13.80487 -13.64097 -13.60418 -13.22814 -13.10421 -12.93638 -12.74597 -12.70271 -12.30875 -12.15320 -11.92778 -11.83373 -11.77391 -11.60743 -11.33525 -11.00472 -10.76676 -10.75258 -10.32851 -9.92976 -8.81674 -8.28271 -6.32819 -0.15625 0.24371 0.48689 1.13998 1.38768 1.40362 1.52007 1.97167 2.25061 2.37611 2.49529 2.66017 3.07545 3.23154 3.43947 3.58194 3.85744 3.95017 4.00652 4.10237 4.17318 4.19256 4.27520 4.46509 4.47666 4.55396 4.65424 4.75639 4.79756 4.86293 4.87770 4.93666 5.01422 5.02568 5.12968 5.16760 5.21202 5.23454 5.35070 5.46287 5.55294 5.55554 5.65275 5.83524 6.15567 6.22954 6.28006 6.59673 6.75618 6.79699 7.31972 8.88249 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.001733 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.400901 B =16152.166749 C =16811.309321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 H 0.138 0.862 4 C -0.108 4.108 5 C -0.165 4.165 6 C -0.086 4.086 7 C 0.098 3.902 8 N -0.628 5.628 9 C 0.513 3.487 10 O -0.520 6.520 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.686 5.686 14 C 0.124 3.876 15 C -0.105 4.105 16 C -0.011 4.011 17 C -0.533 4.533 18 H 0.034 0.966 19 C 0.002 3.998 20 N -0.952 5.952 21 Si 0.950 3.050 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.243 1.243 25 C -0.095 4.095 26 C -0.122 4.122 27 C 0.081 3.919 28 O -0.314 6.314 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.433 0.567 36 H 0.419 0.581 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.166 0.834 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.460 19.928 -26.113 36.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 H 0.155 0.845 4 C -0.145 4.145 5 C -0.167 4.167 6 C -0.106 4.106 7 C 0.005 3.995 8 N -0.276 5.276 9 C 0.295 3.705 10 O -0.395 6.395 11 C 0.289 3.711 12 O -0.418 6.418 13 N -0.338 5.338 14 C 0.001 3.999 15 C -0.143 4.143 16 C -0.049 4.049 17 C -0.571 4.571 18 H 0.052 0.948 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.166 1.166 25 C -0.115 4.115 26 C -0.141 4.141 27 C 0.036 3.964 28 O -0.229 6.229 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.273 0.727 36 H 0.256 0.744 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.184 0.816 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.356 19.904 -26.120 36.252 hybrid contribution 0.264 -0.796 0.775 1.142 sum -15.093 19.108 -25.345 35.147 Atomic orbital electron populations 1.22241 0.93257 1.02658 1.04332 1.23689 0.95483 0.96953 0.82078 0.84474 1.21985 1.03572 0.89792 0.99105 1.20825 1.05758 0.95728 0.94340 1.20250 0.99524 0.90545 1.00295 1.17636 1.04792 0.84546 0.92529 1.42958 1.52078 1.09440 1.23104 1.20182 0.79182 0.89020 0.82131 1.90796 1.44676 1.39210 1.64812 1.19898 0.80287 0.88539 0.82334 1.90772 1.46677 1.38997 1.65338 1.45877 1.51134 1.13814 1.22944 1.21584 1.01175 0.83484 0.93643 1.21528 0.99432 0.98959 0.94404 1.19461 0.96478 0.94724 0.94238 1.21487 1.32406 0.95687 1.07561 0.94755 1.26036 0.95076 1.03758 0.94576 1.70068 1.41294 1.32280 1.15606 0.85654 0.80402 0.78559 0.78022 1.19238 1.21255 1.16609 1.20898 1.00262 0.98557 0.91802 1.20342 1.04421 0.88376 1.00932 1.19850 0.97934 0.85738 0.92916 1.86880 1.80164 1.16441 1.39416 0.88804 0.90796 0.93269 0.87653 0.88485 0.85770 0.72706 0.74362 0.90707 0.90634 0.91822 0.91794 0.95595 0.95722 0.92550 0.81611 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.51 71.98 0.68 -0.77 16 2 C 0.07 0.82 4.31 31.17 0.13 0.95 16 3 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.11 -1.40 6.65 30.73 0.20 -1.20 16 5 C -0.17 -3.09 6.26 -19.53 -0.12 -3.21 16 6 C -0.09 -1.81 8.65 22.32 0.19 -1.62 16 7 C 0.10 1.85 6.29 38.21 0.24 2.09 16 8 N -0.63 -11.64 5.33 -304.67 -1.63 -13.26 16 9 C 0.51 12.01 7.63 87.23 0.67 12.68 16 10 O -0.52 -14.19 14.18 -3.37 -0.05 -14.24 16 11 C 0.51 13.05 7.88 87.23 0.69 13.74 16 12 O -0.54 -15.62 16.48 -3.29 -0.05 -15.67 16 13 N -0.69 -17.63 5.55 -464.55 -2.58 -20.20 16 14 C 0.12 3.58 5.67 86.38 0.49 4.07 16 15 C -0.11 -3.68 5.27 30.60 0.16 -3.52 16 16 C -0.01 -0.49 4.04 29.85 0.12 -0.36 16 17 C -0.53 -30.00 9.66 25.60 0.25 -29.75 16 18 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 19 C 0.00 0.13 5.47 84.65 0.46 0.59 16 20 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 21 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 24 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 25 C -0.10 -1.35 9.94 22.34 0.22 -1.13 16 26 C -0.12 -1.82 10.05 22.43 0.23 -1.60 16 27 C 0.08 1.48 6.91 22.69 0.16 1.64 16 28 O -0.31 -5.49 10.83 -96.01 -1.04 -6.53 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.58 8.08 -2.38 -0.02 0.56 16 32 H 0.11 1.08 7.92 -2.39 -0.02 1.06 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 2.91 6.43 -2.91 -0.02 2.89 16 35 H 0.43 6.23 8.30 -92.71 -0.77 5.46 16 36 H 0.42 9.94 7.94 -92.71 -0.74 9.20 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 42 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -72.24 379.73 1.08 -71.16 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.53 Total: 19.84 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.77 Total: -7.41 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -3.90 Total: -92.51 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.14 Total: -36.44 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -72.24 1.08 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.515 kcal (2) G-P(sol) polarization free energy of solvation -72.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds