Wall clock time and date at job start Tue Mar 31 2020 17:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46979 * 2 1 4 4 N 1.46496 * 109.47292 * 240.00103 * 2 1 3 5 5 C 1.34780 * 120.00376 * 84.99721 * 4 2 1 6 6 O 1.21361 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.49316 * 120.00024 * 180.02562 * 5 4 2 8 8 O 1.21386 * 120.00161 * 359.72026 * 7 5 4 9 9 N 1.34780 * 120.00025 * 180.02562 * 7 5 4 10 10 C 1.39739 * 120.00167 * 175.49539 * 9 7 5 11 11 C 1.39002 * 120.00237 * 214.85207 * 10 9 7 12 12 C 1.37967 * 119.98753 * 179.76438 * 11 10 9 13 13 C 1.38938 * 120.00783 * 0.48483 * 12 11 10 14 14 O 1.35756 * 119.99095 * 179.74462 * 13 12 11 15 15 C 1.34802 * 116.99993 * 185.36281 * 14 13 12 16 16 H 1.08004 * 119.99976 * 354.97270 * 15 14 13 17 17 C 1.38651 * 120.00142 * 174.96514 * 15 14 13 18 18 N 1.31557 * 120.00200 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99901 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47214 * 89.99967 * 19 17 15 21 21 H 1.48503 * 109.46803 * 209.99921 * 19 17 15 22 22 H 1.48495 * 109.47159 * 329.99696 * 19 17 15 23 23 C 1.38938 * 120.01472 * 359.76790 * 13 12 11 24 24 C 1.37966 * 120.00601 * 359.97438 * 23 13 12 25 25 C 1.52997 * 109.46801 * 119.99886 * 2 1 3 26 26 C 1.53008 * 115.54649 * 154.41976 * 25 2 1 27 27 C 1.52995 * 117.50171 * 8.74852 * 25 2 1 28 28 C 1.52993 * 117.50174 * 300.08571 * 25 2 1 29 29 H 1.08992 * 109.47417 * 300.00039 * 1 2 3 30 30 H 1.09003 * 109.47028 * 60.00369 * 1 2 3 31 31 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99994 * 264.99963 * 4 2 1 33 33 H 0.97004 * 119.99707 * 355.48788 * 9 7 5 34 34 H 1.07994 * 120.00586 * 359.97087 * 11 10 9 35 35 H 1.08002 * 119.99707 * 180.21187 * 12 11 10 36 36 H 0.96999 * 120.00435 * 179.97438 * 18 17 15 37 37 H 1.07997 * 119.99461 * 179.97438 * 23 13 12 38 38 H 1.07995 * 120.00340 * 179.97438 * 24 23 13 39 39 H 1.08998 * 109.46909 * 85.58145 * 26 25 2 40 40 H 1.09004 * 109.46546 * 205.58192 * 26 25 2 41 41 H 1.09002 * 109.46861 * 325.58012 * 26 25 2 42 42 H 1.09002 * 117.49808 * 0.02562 * 27 25 2 43 43 H 1.09000 * 117.49921 * 145.01924 * 27 25 2 44 44 H 1.09004 * 117.50063 * 214.98302 * 28 25 2 45 45 H 1.09000 * 117.50061 * 359.97438 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3572 6 8 1.8588 1.1594 -2.4116 7 6 2.6443 -0.7223 -3.5764 8 8 2.9374 -1.8990 -3.5207 9 7 2.7735 -0.0499 -4.7373 10 6 3.3269 -0.6828 -5.8535 11 6 4.1121 0.0400 -6.7442 12 6 4.6623 -0.5863 -7.8435 13 6 4.4234 -1.9368 -8.0658 14 8 4.9607 -2.5515 -9.1504 15 6 4.6011 -3.8322 -9.3688 16 1 3.9795 -4.3483 -8.6520 17 6 5.0289 -4.4869 -10.5136 18 7 5.7863 -3.8584 -11.3867 19 14 4.5299 -6.2614 -10.8165 20 1 3.2535 -6.2942 -11.5745 21 1 5.5889 -6.9464 -11.6005 22 1 4.3509 -6.9542 -9.5154 23 6 3.6343 -2.6583 -7.1785 24 6 3.0882 -2.0338 -6.0761 25 6 2.0399 -0.7212 1.2493 26 6 3.4338 -1.3410 1.1306 27 6 1.0108 -1.4565 2.1101 28 6 1.6340 -0.1507 2.6096 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 2.4823 0.8734 -4.7980 34 1 4.2941 1.0907 -6.5739 35 1 5.2752 -0.0257 -8.5338 36 1 6.0860 -4.3165 -12.1874 37 1 3.4485 -3.7079 -7.3518 38 1 2.4745 -2.5945 -5.3867 39 1 4.1871 -0.5880 1.3622 40 1 3.5229 -2.1716 1.8309 41 1 3.5843 -1.7049 0.1142 42 1 -0.0296 -1.4268 1.7861 43 1 1.3268 -2.3816 2.5922 44 1 2.3598 -0.2172 3.4201 45 1 1.0040 0.7388 2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338022857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:48 Heat of formation + Delta-G solvation = -36.144970 kcal Electronic energy + Delta-G solvation = -27365.859926 eV Core-core repulsion = 23350.576218 eV Total energy + Delta-G solvation = -4015.283708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.02221 -39.79868 -38.87650 -38.19689 -36.62031 -34.93734 -33.86927 -32.22598 -30.71905 -30.26941 -29.10445 -28.28196 -25.66709 -25.00081 -23.65440 -22.82258 -22.29929 -21.25369 -20.24458 -19.60577 -18.60177 -17.94112 -17.25281 -16.98488 -16.50243 -16.17841 -15.84237 -15.18300 -14.84240 -14.55149 -14.37603 -14.25460 -13.90059 -13.65477 -13.64729 -13.56486 -13.36155 -12.95907 -12.88267 -12.62788 -12.43057 -12.19343 -11.85452 -11.79402 -11.76065 -11.61161 -11.37709 -11.31273 -11.05219 -10.79237 -10.72958 -10.45909 -10.19191 -9.79418 -9.64280 -9.49196 -9.22942 -8.75249 -8.26878 -7.01899 -6.48502 -4.05802 1.25291 2.11452 2.16208 2.35933 3.11093 3.13115 3.17951 3.19886 3.27269 3.62316 3.94776 4.10509 4.32011 4.38107 4.41695 4.50797 4.53989 4.87168 4.96501 5.05807 5.15731 5.21617 5.28457 5.35319 5.39795 5.41984 5.55936 5.57054 5.62422 5.67411 5.68990 5.81951 5.84784 6.02102 6.03794 6.10175 6.23560 6.62273 6.71951 6.88243 6.95038 7.03788 7.23895 7.38008 7.43978 7.67503 7.72231 7.96323 8.08466 8.97012 9.65441 10.69093 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002077 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.480267 B =13476.732194 C =14218.735006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.096 0.904 4 N -0.695 5.695 5 C 0.513 3.487 6 O -0.522 6.522 7 C 0.495 3.505 8 O -0.509 6.509 9 N -0.623 5.623 10 C 0.022 3.978 11 C -0.085 4.085 12 C -0.178 4.178 13 C 0.150 3.850 14 O -0.173 6.173 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.222 4.222 24 C -0.060 4.060 25 C -0.144 4.144 26 C -0.120 4.120 27 C -0.176 4.176 28 C -0.164 4.164 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.414 0.586 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 6.765 24.436 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.075 3.925 3 H 0.114 0.886 4 N -0.349 5.349 5 C 0.294 3.706 6 O -0.398 6.398 7 C 0.276 3.724 8 O -0.385 6.385 9 N -0.269 5.269 10 C -0.070 4.070 11 C -0.105 4.105 12 C -0.198 4.198 13 C 0.095 3.905 14 O -0.076 6.076 15 C -0.467 4.467 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.242 4.242 24 C -0.080 4.080 25 C -0.144 4.144 26 C -0.177 4.177 27 C -0.212 4.212 28 C -0.202 4.202 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.857 6.796 24.050 26.515 hybrid contribution -0.290 -0.874 -0.081 0.924 sum -9.147 5.922 23.969 26.330 Atomic orbital electron populations 1.22313 0.94702 1.02679 1.02870 1.20437 0.93937 0.96665 0.81474 0.88650 1.45887 1.65360 1.15090 1.08588 1.20175 0.78760 0.86945 0.84726 1.90752 1.48760 1.15359 1.84940 1.20020 0.80638 0.87400 0.84308 1.90775 1.48128 1.14974 1.84619 1.42841 1.59051 1.16470 1.08510 1.17240 1.05444 0.93597 0.90760 1.20390 0.96608 0.98830 0.94632 1.20003 1.06859 0.92578 1.00316 1.19445 0.91252 0.91726 0.88049 1.83966 1.58895 1.27057 1.37681 1.21357 1.33160 0.85203 1.07011 0.88916 1.25308 0.96270 1.00316 0.94626 1.70035 1.31992 1.37264 1.10183 0.85697 0.78449 0.80245 0.78991 1.19828 1.20234 1.19112 1.21089 1.04950 1.01272 0.96876 1.20830 0.98114 0.92901 0.96123 1.21726 0.96912 1.04167 0.91617 1.21376 0.93311 1.00341 1.02668 1.23360 0.98773 0.96199 1.02904 1.23052 1.03535 0.97724 0.95865 0.91202 0.91648 0.91651 0.74810 0.74990 0.86424 0.85836 0.91940 0.85040 0.85683 0.91883 0.91960 0.91561 0.87853 0.88616 0.88428 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 8.08 37.16 0.30 -0.90 16 2 C 0.18 1.45 2.84 -67.93 -0.19 1.26 16 3 H 0.10 0.88 7.58 -51.93 -0.39 0.49 16 4 N -0.69 -6.80 4.33 -54.28 -0.24 -7.04 16 5 C 0.51 6.38 7.85 -11.65 -0.09 6.28 16 6 O -0.52 -7.22 16.14 5.49 0.09 -7.13 16 7 C 0.50 7.22 7.72 -11.65 -0.09 7.13 16 8 O -0.51 -8.55 13.92 5.46 0.08 -8.47 16 9 N -0.62 -9.13 5.32 -10.27 -0.05 -9.18 16 10 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 11 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 12 C -0.18 -3.64 9.98 -39.42 -0.39 -4.04 16 13 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 14 O -0.17 -4.87 9.75 0.11 0.00 -4.87 16 15 C -0.39 -10.82 9.48 30.88 0.29 -10.53 16 16 H 0.09 2.38 5.19 -52.48 -0.27 2.11 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 19 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 24 C -0.06 -1.18 8.68 -39.40 -0.34 -1.52 16 25 C -0.14 -0.94 2.50 -154.51 -0.39 -1.33 16 26 C -0.12 -0.82 9.69 37.16 0.36 -0.46 16 27 C -0.18 -0.96 9.22 -26.70 -0.25 -1.21 16 28 C -0.16 -0.88 9.62 -26.70 -0.26 -1.14 16 29 H 0.07 0.39 7.07 -51.93 -0.37 0.03 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.44 6.97 -51.93 -0.36 0.08 16 32 H 0.41 3.83 6.66 -40.82 -0.27 3.56 16 33 H 0.41 5.10 8.30 -40.82 -0.34 4.76 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 2.90 5.63 -52.49 -0.30 2.61 16 38 H 0.13 2.38 6.23 -52.49 -0.33 2.05 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 41 H 0.07 0.51 6.03 -51.93 -0.31 0.20 16 42 H 0.10 0.53 5.85 -51.93 -0.30 0.22 16 43 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.47 7.60 -51.93 -0.39 0.07 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -31.68 375.14 -7.13 -38.81 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.72 Total: 10.46 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.68 Total: -9.41 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.47 Total: -40.40 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.17 Total: -20.47 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.68 -7.13 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338022857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.667 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds