Wall clock time and date at job start Tue Mar 31 2020 17:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46979 * 2 1 4 4 N 1.46496 * 109.47292 * 240.00103 * 2 1 3 5 5 C 1.34780 * 120.00376 * 84.99721 * 4 2 1 6 6 O 1.21361 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.49316 * 120.00024 * 180.02562 * 5 4 2 8 8 O 1.21386 * 120.00161 * 359.72026 * 7 5 4 9 9 N 1.34780 * 120.00025 * 180.02562 * 7 5 4 10 10 C 1.39739 * 120.00167 * 175.49539 * 9 7 5 11 11 C 1.39002 * 120.00237 * 214.85207 * 10 9 7 12 12 C 1.37967 * 119.98753 * 179.76438 * 11 10 9 13 13 C 1.38938 * 120.00783 * 0.48483 * 12 11 10 14 14 O 1.35756 * 119.99095 * 179.74462 * 13 12 11 15 15 C 1.34802 * 116.99993 * 185.36281 * 14 13 12 16 16 H 1.08004 * 119.99976 * 354.97270 * 15 14 13 17 17 C 1.38651 * 120.00142 * 174.96514 * 15 14 13 18 18 N 1.31557 * 120.00200 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99901 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47214 * 89.99967 * 19 17 15 21 21 H 1.48503 * 109.46803 * 209.99921 * 19 17 15 22 22 H 1.48495 * 109.47159 * 329.99696 * 19 17 15 23 23 C 1.38938 * 120.01472 * 359.76790 * 13 12 11 24 24 C 1.37966 * 120.00601 * 359.97438 * 23 13 12 25 25 C 1.52997 * 109.46801 * 119.99886 * 2 1 3 26 26 C 1.53008 * 115.54649 * 154.41976 * 25 2 1 27 27 C 1.52995 * 117.50171 * 8.74852 * 25 2 1 28 28 C 1.52993 * 117.50174 * 300.08571 * 25 2 1 29 29 H 1.08992 * 109.47417 * 300.00039 * 1 2 3 30 30 H 1.09003 * 109.47028 * 60.00369 * 1 2 3 31 31 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99994 * 264.99963 * 4 2 1 33 33 H 0.97004 * 119.99707 * 355.48788 * 9 7 5 34 34 H 1.07994 * 120.00586 * 359.97087 * 11 10 9 35 35 H 1.08002 * 119.99707 * 180.21187 * 12 11 10 36 36 H 0.96999 * 120.00435 * 179.97438 * 18 17 15 37 37 H 1.07997 * 119.99461 * 179.97438 * 23 13 12 38 38 H 1.07995 * 120.00340 * 179.97438 * 24 23 13 39 39 H 1.08998 * 109.46909 * 85.58145 * 26 25 2 40 40 H 1.09004 * 109.46546 * 205.58192 * 26 25 2 41 41 H 1.09002 * 109.46861 * 325.58012 * 26 25 2 42 42 H 1.09002 * 117.49808 * 0.02562 * 27 25 2 43 43 H 1.09000 * 117.49921 * 145.01924 * 27 25 2 44 44 H 1.09004 * 117.50063 * 214.98302 * 28 25 2 45 45 H 1.09000 * 117.50061 * 359.97438 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3572 6 8 1.8588 1.1594 -2.4116 7 6 2.6443 -0.7223 -3.5764 8 8 2.9374 -1.8990 -3.5207 9 7 2.7735 -0.0499 -4.7373 10 6 3.3269 -0.6828 -5.8535 11 6 4.1121 0.0400 -6.7442 12 6 4.6623 -0.5863 -7.8435 13 6 4.4234 -1.9368 -8.0658 14 8 4.9607 -2.5515 -9.1504 15 6 4.6011 -3.8322 -9.3688 16 1 3.9795 -4.3483 -8.6520 17 6 5.0289 -4.4869 -10.5136 18 7 5.7863 -3.8584 -11.3867 19 14 4.5299 -6.2614 -10.8165 20 1 3.2535 -6.2942 -11.5745 21 1 5.5889 -6.9464 -11.6005 22 1 4.3509 -6.9542 -9.5154 23 6 3.6343 -2.6583 -7.1785 24 6 3.0882 -2.0338 -6.0761 25 6 2.0399 -0.7212 1.2493 26 6 3.4338 -1.3410 1.1306 27 6 1.0108 -1.4565 2.1101 28 6 1.6340 -0.1507 2.6096 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 2.4823 0.8734 -4.7980 34 1 4.2941 1.0907 -6.5739 35 1 5.2752 -0.0257 -8.5338 36 1 6.0860 -4.3165 -12.1874 37 1 3.4485 -3.7079 -7.3518 38 1 2.4745 -2.5945 -5.3867 39 1 4.1871 -0.5880 1.3622 40 1 3.5229 -2.1716 1.8309 41 1 3.5843 -1.7049 0.1142 42 1 -0.0296 -1.4268 1.7861 43 1 1.3268 -2.3816 2.5922 44 1 2.3598 -0.2172 3.4201 45 1 1.0040 0.7388 2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338022857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:47 Heat of formation + Delta-G solvation = -56.821285 kcal Electronic energy + Delta-G solvation = -27366.756519 eV Core-core repulsion = 23350.576218 eV Total energy + Delta-G solvation = -4016.180300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15054 -40.97567 -40.21176 -39.21448 -38.21819 -35.97096 -35.12103 -34.17224 -31.92339 -31.39050 -29.98139 -29.52478 -27.43734 -26.19156 -24.54044 -23.90769 -23.30608 -22.65378 -21.35477 -20.58816 -19.93914 -19.40597 -18.75514 -18.27731 -17.50673 -17.28489 -16.93812 -16.33596 -16.18324 -15.99479 -15.54504 -15.44540 -15.32910 -15.07128 -14.82600 -14.69130 -14.35260 -14.16468 -13.95935 -13.58759 -13.46344 -13.36905 -13.27347 -12.97478 -12.80709 -12.73167 -12.66289 -12.43695 -12.20725 -12.12707 -11.85812 -11.46394 -11.25140 -11.11613 -10.77299 -10.67589 -10.57074 -10.28271 -9.88058 -8.70418 -8.47518 -6.14233 0.05013 0.50748 0.68859 1.21689 1.36156 1.44800 1.53119 2.05496 2.17837 2.50312 2.79039 2.85719 3.12664 3.32331 3.48718 3.55990 3.82564 3.89633 4.05305 4.05843 4.08187 4.27042 4.38800 4.44847 4.57271 4.63980 4.64361 4.81023 4.85825 4.87405 4.91932 5.02450 5.04672 5.04908 5.07017 5.21970 5.27177 5.28657 5.30893 5.31995 5.35243 5.49368 5.66266 5.87032 6.01152 6.09424 6.29839 6.68365 6.87397 6.97185 7.75172 8.74952 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002077 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.480267 B =13476.732194 C =14218.735006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.178 3.822 3 H 0.085 0.915 4 N -0.681 5.681 5 C 0.520 3.480 6 O -0.536 6.536 7 C 0.498 3.502 8 O -0.530 6.530 9 N -0.619 5.619 10 C 0.049 3.951 11 C -0.071 4.071 12 C -0.180 4.180 13 C 0.113 3.887 14 O -0.224 6.224 15 C -0.414 4.414 16 H 0.100 0.900 17 C -0.021 4.021 18 N -0.916 5.916 19 Si 1.017 2.983 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.255 1.255 23 C -0.228 4.228 24 C -0.068 4.068 25 C -0.155 4.155 26 C -0.120 4.120 27 C -0.170 4.170 28 C -0.157 4.157 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.418 0.582 33 H 0.429 0.571 34 H 0.164 0.836 35 H 0.131 0.869 36 H 0.273 0.727 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 7.427 27.507 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.103 0.897 4 N -0.335 5.335 5 C 0.300 3.700 6 O -0.413 6.413 7 C 0.281 3.719 8 O -0.406 6.406 9 N -0.266 5.266 10 C -0.045 4.045 11 C -0.091 4.091 12 C -0.199 4.199 13 C 0.062 3.938 14 O -0.130 6.130 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.219 4.219 18 N -0.554 5.554 19 Si 0.836 3.164 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.179 1.179 23 C -0.247 4.247 24 C -0.088 4.088 25 C -0.155 4.155 26 C -0.177 4.177 27 C -0.207 4.207 28 C -0.194 4.194 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.268 0.732 34 H 0.182 0.818 35 H 0.148 0.852 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.442 7.497 27.206 30.090 hybrid contribution 0.083 -0.840 -0.665 1.075 sum -10.359 6.657 26.542 29.259 Atomic orbital electron populations 1.22288 0.93717 1.03131 1.03001 1.20574 0.94638 0.96136 0.81214 0.89681 1.45938 1.63990 1.15227 1.08303 1.19687 0.79083 0.86602 0.84583 1.90760 1.49807 1.15703 1.85012 1.20460 0.79564 0.87070 0.84845 1.90777 1.48713 1.16081 1.85049 1.42783 1.58966 1.17134 1.07694 1.17368 1.03265 0.92907 0.90916 1.20778 0.94704 1.00804 0.92772 1.20306 1.06799 0.91458 1.01368 1.19970 0.92690 0.93253 0.87935 1.83936 1.61483 1.27568 1.40024 1.21797 1.33687 0.85749 1.07733 0.88222 1.26553 0.96088 1.05189 0.94036 1.70169 1.34463 1.39558 1.11222 0.84610 0.78374 0.74103 0.79294 1.18759 1.19500 1.17886 1.21104 1.05110 1.01044 0.97484 1.20930 0.98291 0.94053 0.95501 1.21646 0.97095 1.05284 0.91505 1.21366 0.93539 1.00606 1.02178 1.23430 0.98683 0.96529 1.02047 1.23144 1.03449 0.97985 0.94869 0.89313 0.93288 0.91010 0.74378 0.73170 0.81827 0.85150 0.91759 0.86000 0.84932 0.92153 0.91044 0.92725 0.87280 0.88097 0.87778 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.08 71.98 0.58 -1.38 16 2 C 0.18 2.51 2.84 44.99 0.13 2.64 16 3 H 0.09 1.42 7.58 -2.39 -0.02 1.40 16 4 N -0.68 -12.07 4.33 -444.01 -1.92 -13.99 16 5 C 0.52 11.86 7.85 87.23 0.68 12.54 16 6 O -0.54 -13.62 16.14 -3.28 -0.05 -13.67 16 7 C 0.50 13.44 7.72 87.23 0.67 14.12 16 8 O -0.53 -16.88 13.92 -3.36 -0.05 -16.92 16 9 N -0.62 -16.35 5.32 -304.75 -1.62 -17.97 16 10 C 0.05 1.61 6.30 38.24 0.24 1.85 16 11 C -0.07 -2.28 9.96 22.39 0.22 -2.06 16 12 C -0.18 -7.30 9.98 22.37 0.22 -7.08 16 13 C 0.11 5.55 6.65 22.61 0.15 5.70 16 14 O -0.22 -13.31 9.75 -22.52 -0.22 -13.53 16 15 C -0.41 -24.02 9.48 67.92 0.64 -23.38 16 16 H 0.10 5.37 5.19 -2.91 -0.02 5.35 16 17 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 18 N -0.92 -55.72 13.67 21.61 0.30 -55.43 16 19 Si 1.02 42.89 29.55 68.60 2.03 44.92 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 23 C -0.23 -10.26 9.16 22.37 0.20 -10.06 16 24 C -0.07 -2.61 8.68 22.39 0.19 -2.42 16 25 C -0.15 -1.68 2.50 -52.18 -0.13 -1.81 16 26 C -0.12 -1.42 9.69 71.98 0.70 -0.72 16 27 C -0.17 -1.38 9.22 30.62 0.28 -1.10 16 28 C -0.16 -1.24 9.62 30.62 0.29 -0.95 16 29 H 0.09 0.74 7.07 -2.39 -0.02 0.72 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.78 6.97 -2.39 -0.02 0.76 16 32 H 0.42 7.01 6.66 -92.71 -0.62 6.39 16 33 H 0.43 9.08 8.30 -92.71 -0.77 8.31 16 34 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.13 5.06 8.06 -2.91 -0.02 5.03 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.12 5.62 5.63 -2.91 -0.02 5.60 16 38 H 0.13 4.91 6.23 -2.91 -0.02 4.89 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.70 7.90 -2.38 -0.02 0.69 16 41 H 0.05 0.76 6.03 -2.39 -0.01 0.75 16 42 H 0.11 0.77 5.85 -2.39 -0.01 0.76 16 43 H 0.10 0.74 8.05 -2.39 -0.02 0.72 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.69 7.60 -2.39 -0.02 0.67 16 Total: -1.00 -72.11 375.14 3.69 -68.42 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.33 Total: 32.97 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 5.56 Total: -14.80 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -3.25 Total: -87.39 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.32 Total: -44.12 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.11 3.69 -68.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338022857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.601 kcal (2) G-P(sol) polarization free energy of solvation -72.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds