Wall clock time and date at job start Tue Mar 31 2020 17:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.00358 * 2 1 4 4 C 1.54340 * 109.98975 * 238.95935 * 2 1 3 5 5 H 1.08994 * 111.00071 * 100.13061 * 4 2 1 6 6 O 1.42899 * 110.51815 * 336.97590 * 4 2 1 7 7 C 1.55165 * 103.01821 * 218.66564 * 4 2 1 8 8 C 1.54908 * 101.58059 * 35.31092 * 7 4 2 9 9 N 1.47021 * 109.88169 * 121.09669 * 2 1 3 10 10 C 1.34774 * 125.64651 * 298.38992 * 9 2 1 11 11 O 1.21366 * 120.00200 * 359.44897 * 10 9 2 12 12 C 1.49361 * 120.00332 * 179.71875 * 10 9 2 13 13 O 1.21378 * 119.99625 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00296 * 180.02562 * 12 10 9 15 15 C 1.39724 * 120.00130 * 174.72466 * 14 12 10 16 16 C 1.38926 * 120.07288 * 326.50010 * 15 14 12 17 17 C 1.38100 * 119.92068 * 179.76854 * 16 15 14 18 18 C 1.38293 * 120.07658 * 0.48465 * 17 16 15 19 19 C 1.50697 * 119.92689 * 179.77106 * 18 17 16 20 20 C 1.50703 * 109.46781 * 270.01841 * 19 18 17 21 21 H 1.07999 * 119.99878 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99555 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00022 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46579 * 89.99859 * 24 22 20 26 26 H 1.48499 * 109.47370 * 209.99870 * 24 22 20 27 27 H 1.48501 * 109.47461 * 330.00312 * 24 22 20 28 28 C 1.38295 * 120.15008 * 359.78854 * 18 17 16 29 29 C 1.38098 * 120.07694 * 359.95326 * 28 18 17 30 30 H 1.08998 * 109.46817 * 300.36047 * 1 2 3 31 31 H 1.09005 * 109.47059 * 60.36274 * 1 2 3 32 32 H 1.09000 * 109.47336 * 180.36019 * 1 2 3 33 33 H 0.96700 * 113.99879 * 185.04693 * 6 4 2 34 34 H 1.09001 * 111.00341 * 277.23403 * 7 4 2 35 35 H 1.09005 * 111.03351 * 153.40013 * 7 4 2 36 36 H 1.08998 * 110.36306 * 204.14993 * 8 7 4 37 37 H 1.09000 * 110.36729 * 81.82940 * 8 7 4 38 38 H 0.97004 * 119.99548 * 354.72617 * 14 12 10 39 39 H 1.07995 * 120.03939 * 0.02562 * 16 15 14 40 40 H 1.07999 * 119.96669 * 180.25638 * 17 16 15 41 41 H 1.08999 * 109.47401 * 30.01777 * 19 18 17 42 42 H 1.08998 * 109.47111 * 150.02078 * 19 18 17 43 43 H 0.97000 * 119.99408 * 179.97438 * 23 22 20 44 44 H 1.08005 * 119.96281 * 179.97438 * 28 18 17 45 45 H 1.08000 * 120.03761 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2427 5 1 2.3593 -0.0474 -2.0213 6 8 1.0713 -1.6562 -1.7369 7 6 3.2864 -1.5185 -0.6914 8 6 2.8099 -1.8826 0.7369 9 7 2.0300 -0.7141 1.1839 10 6 1.8074 -0.3620 2.4657 11 8 1.1512 0.6273 2.7181 12 6 2.3733 -1.1859 3.5756 13 8 3.0333 -2.1728 3.3231 14 7 2.1503 -0.8341 4.8573 15 6 2.5846 -1.6628 5.8950 16 6 2.5918 -3.0420 5.7279 17 6 3.0262 -3.8579 6.7538 18 6 3.4444 -3.3042 7.9501 19 6 3.9129 -4.1980 9.0692 20 6 2.7403 -4.5691 9.9401 21 1 1.7544 -4.1954 9.7062 22 6 2.9260 -5.3865 11.0348 23 7 1.9026 -5.7107 11.7945 24 14 4.6309 -6.0346 11.4380 25 1 5.3211 -5.0817 12.3441 26 1 4.5132 -7.3558 12.1058 27 1 5.4139 -6.1814 10.1848 28 6 3.4332 -1.9320 8.1218 29 6 3.0050 -1.1099 7.0981 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5082 -0.8933 32 1 -0.3634 -1.0276 0.0065 33 1 1.3769 -2.2081 -2.4697 34 1 4.1670 -0.8769 -0.6578 35 1 3.4814 -2.4157 -1.2789 36 1 3.6655 -2.0413 1.3933 37 1 2.1801 -2.7719 0.7115 38 1 1.6881 -0.0054 5.0594 39 1 2.2619 -3.4753 4.7953 40 1 3.0360 -4.9300 6.6232 41 1 4.3555 -5.1021 8.6511 42 1 4.6573 -3.6720 9.6669 43 1 2.0332 -6.2861 12.5644 44 1 3.7600 -1.5028 9.0574 45 1 2.9961 -0.0384 7.2330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338187822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:55 Heat of formation + Delta-G solvation = -79.493841 kcal Electronic energy + Delta-G solvation = -27787.690183 eV Core-core repulsion = 23770.526727 eV Total energy + Delta-G solvation = -4017.163456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31267 -39.99833 -38.61131 -37.97970 -35.99970 -35.00429 -32.97452 -31.85567 -31.24285 -30.89319 -30.44171 -27.51594 -26.09473 -25.30452 -23.26080 -22.51963 -22.35678 -21.26037 -20.18346 -19.73041 -18.17159 -18.05181 -17.17369 -16.83513 -16.78004 -16.43523 -15.81102 -15.08501 -14.92744 -14.80960 -14.68500 -14.17356 -14.06215 -13.80937 -13.60160 -13.35231 -13.22569 -12.97682 -12.78453 -12.51294 -12.45053 -12.39358 -12.05315 -11.77843 -11.67926 -11.57705 -11.47093 -11.11814 -10.87293 -10.50798 -10.47270 -10.32250 -10.06175 -9.83326 -9.49738 -9.34883 -9.14577 -8.59269 -8.41859 -7.52359 -6.08134 -4.07440 1.06373 1.87592 1.92875 2.07606 3.03121 3.22331 3.28231 3.36278 3.39098 3.54789 3.93169 4.03560 4.22611 4.36558 4.40849 4.41271 4.75061 4.87481 4.95247 5.12256 5.16056 5.22827 5.32826 5.37583 5.41875 5.50376 5.59837 5.64997 5.76632 5.82137 5.86827 5.92438 6.04645 6.07880 6.48673 6.54282 6.66422 6.84236 6.90777 6.99051 7.00347 7.09465 7.16058 7.45986 7.53887 7.55903 7.69037 7.85258 8.48444 8.97197 9.51947 11.04725 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.002138 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.928142 B =13093.022590 C =13469.742117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.091 0.909 4 C 0.095 3.905 5 H 0.081 0.919 6 O -0.552 6.552 7 C -0.169 4.169 8 C 0.099 3.901 9 N -0.586 5.586 10 C 0.526 3.474 11 O -0.519 6.519 12 C 0.505 3.495 13 O -0.499 6.499 14 N -0.635 5.635 15 C 0.101 3.899 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.033 4.033 19 C 0.014 3.986 20 C -0.513 4.513 21 H 0.074 0.926 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.878 3.122 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.264 1.264 28 C -0.105 4.105 29 C -0.135 4.135 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.381 0.619 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.418 0.582 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.264 0.736 44 H 0.126 0.874 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 11.754 -28.403 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.109 0.891 4 C 0.035 3.965 5 H 0.099 0.901 6 O -0.358 6.358 7 C -0.208 4.208 8 C -0.023 4.023 9 N -0.321 5.321 10 C 0.309 3.691 11 O -0.394 6.394 12 C 0.287 3.713 13 O -0.374 6.374 14 N -0.280 5.280 15 C 0.009 3.991 16 C -0.133 4.133 17 C -0.123 4.123 18 C -0.034 4.034 19 C -0.023 4.023 20 C -0.551 4.551 21 H 0.092 0.908 22 C -0.133 4.133 23 N -0.538 5.538 24 Si 0.705 3.295 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 C -0.124 4.124 29 C -0.155 4.155 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.255 0.745 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.143 0.857 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.228 11.788 -27.776 30.256 hybrid contribution 0.867 -0.268 0.020 0.908 sum 3.095 11.520 -27.756 30.210 Atomic orbital electron populations 1.21870 0.93244 1.03381 1.02555 1.21725 0.96377 0.95518 0.82614 0.89126 1.22765 0.87710 0.91434 0.94604 0.90086 1.86578 1.39583 1.54712 1.54972 1.23587 0.98401 1.01875 0.96905 1.22650 0.96771 0.87914 0.94943 1.48317 1.51217 1.28492 1.04114 1.19704 0.81421 0.85330 0.82636 1.90766 1.39086 1.26444 1.83149 1.19988 0.81477 0.85882 0.83956 1.90744 1.37079 1.26351 1.83206 1.43030 1.56261 1.24886 1.03865 1.17515 1.03490 0.89972 0.88088 1.20970 1.01254 0.91333 0.99763 1.20962 0.99111 0.99784 0.92461 1.20355 0.94238 0.94072 0.94697 1.18823 0.97397 0.94024 0.92099 1.20929 0.94605 1.30227 1.09353 0.90779 1.25007 0.96760 0.95714 0.95820 1.69902 1.30336 1.36671 1.16857 0.86801 0.85106 0.78568 0.79018 1.20168 1.21265 1.18896 1.20886 1.00207 0.93220 0.98050 1.20773 1.02133 0.99445 0.93136 0.91482 0.91467 0.91346 0.77139 0.89520 0.88969 0.87753 0.90419 0.74487 0.85696 0.85778 0.95301 0.95746 0.92595 0.85651 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.57 37.16 0.32 -1.08 16 2 C 0.14 1.16 3.44 -66.94 -0.23 0.93 16 3 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.09 0.50 4.19 -24.88 -0.10 0.40 16 5 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 6 O -0.55 -3.15 11.75 -35.23 -0.41 -3.57 16 7 C -0.17 -0.85 6.81 -24.58 -0.17 -1.02 16 8 C 0.10 0.86 6.05 -2.53 -0.02 0.84 16 9 N -0.59 -6.01 3.06 -163.55 -0.50 -6.52 16 10 C 0.53 6.60 7.70 -11.63 -0.09 6.51 16 11 O -0.52 -7.23 15.54 5.48 0.09 -7.14 16 12 C 0.51 6.92 7.59 -11.63 -0.09 6.83 16 13 O -0.50 -7.52 11.47 5.47 0.06 -7.45 16 14 N -0.63 -8.64 5.32 -10.30 -0.05 -8.70 16 15 C 0.10 1.64 6.27 -83.75 -0.53 1.11 16 16 C -0.11 -2.00 8.65 -39.38 -0.34 -2.34 16 17 C -0.10 -2.02 9.69 -39.61 -0.38 -2.41 16 18 C -0.03 -0.69 5.07 -104.58 -0.53 -1.22 16 19 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 20 C -0.51 -14.42 9.65 -34.44 -0.33 -14.75 16 21 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 24 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 28 C -0.11 -1.93 9.69 -39.61 -0.38 -2.32 16 29 C -0.13 -2.14 9.96 -39.38 -0.39 -2.54 16 30 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.71 7.44 -51.93 -0.39 0.32 16 33 H 0.38 0.57 9.11 45.56 0.42 0.98 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 1.04 6.16 -51.93 -0.32 0.72 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.42 4.86 8.29 -40.82 -0.34 4.52 16 39 H 0.13 2.13 6.42 -52.49 -0.34 1.79 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 41 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 42 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 45 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 370.61 15.07 5.58 5.58 Total: -1.00 -33.83 370.61 -8.09 -41.92 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.48 Total: 4.93 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.48 Total: -8.97 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.22 Total: -41.86 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.27 Total: -18.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.83 -8.09 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338187822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.575 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds