Wall clock time and date at job start Tue Mar 31 2020 17:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.00358 * 2 1 4 4 C 1.54340 * 109.98975 * 238.95935 * 2 1 3 5 5 H 1.08994 * 111.00071 * 100.13061 * 4 2 1 6 6 O 1.42899 * 110.51815 * 336.97590 * 4 2 1 7 7 C 1.55165 * 103.01821 * 218.66564 * 4 2 1 8 8 C 1.54908 * 101.58059 * 35.31092 * 7 4 2 9 9 N 1.47021 * 109.88169 * 121.09669 * 2 1 3 10 10 C 1.34774 * 125.64651 * 298.38992 * 9 2 1 11 11 O 1.21366 * 120.00200 * 359.44897 * 10 9 2 12 12 C 1.49361 * 120.00332 * 179.71875 * 10 9 2 13 13 O 1.21378 * 119.99625 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00296 * 180.02562 * 12 10 9 15 15 C 1.39724 * 120.00130 * 174.72466 * 14 12 10 16 16 C 1.38926 * 120.07288 * 326.50010 * 15 14 12 17 17 C 1.38100 * 119.92068 * 179.76854 * 16 15 14 18 18 C 1.38293 * 120.07658 * 0.48465 * 17 16 15 19 19 C 1.50697 * 119.92689 * 179.77106 * 18 17 16 20 20 C 1.50703 * 109.46781 * 270.01841 * 19 18 17 21 21 H 1.07999 * 119.99878 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99555 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00022 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46579 * 89.99859 * 24 22 20 26 26 H 1.48499 * 109.47370 * 209.99870 * 24 22 20 27 27 H 1.48501 * 109.47461 * 330.00312 * 24 22 20 28 28 C 1.38295 * 120.15008 * 359.78854 * 18 17 16 29 29 C 1.38098 * 120.07694 * 359.95326 * 28 18 17 30 30 H 1.08998 * 109.46817 * 300.36047 * 1 2 3 31 31 H 1.09005 * 109.47059 * 60.36274 * 1 2 3 32 32 H 1.09000 * 109.47336 * 180.36019 * 1 2 3 33 33 H 0.96700 * 113.99879 * 185.04693 * 6 4 2 34 34 H 1.09001 * 111.00341 * 277.23403 * 7 4 2 35 35 H 1.09005 * 111.03351 * 153.40013 * 7 4 2 36 36 H 1.08998 * 110.36306 * 204.14993 * 8 7 4 37 37 H 1.09000 * 110.36729 * 81.82940 * 8 7 4 38 38 H 0.97004 * 119.99548 * 354.72617 * 14 12 10 39 39 H 1.07995 * 120.03939 * 0.02562 * 16 15 14 40 40 H 1.07999 * 119.96669 * 180.25638 * 17 16 15 41 41 H 1.08999 * 109.47401 * 30.01777 * 19 18 17 42 42 H 1.08998 * 109.47111 * 150.02078 * 19 18 17 43 43 H 0.97000 * 119.99408 * 179.97438 * 23 22 20 44 44 H 1.08005 * 119.96281 * 179.97438 * 28 18 17 45 45 H 1.08000 * 120.03761 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2427 5 1 2.3593 -0.0474 -2.0213 6 8 1.0713 -1.6562 -1.7369 7 6 3.2864 -1.5185 -0.6914 8 6 2.8099 -1.8826 0.7369 9 7 2.0300 -0.7141 1.1839 10 6 1.8074 -0.3620 2.4657 11 8 1.1512 0.6273 2.7181 12 6 2.3733 -1.1859 3.5756 13 8 3.0333 -2.1728 3.3231 14 7 2.1503 -0.8341 4.8573 15 6 2.5846 -1.6628 5.8950 16 6 2.5918 -3.0420 5.7279 17 6 3.0262 -3.8579 6.7538 18 6 3.4444 -3.3042 7.9501 19 6 3.9129 -4.1980 9.0692 20 6 2.7403 -4.5691 9.9401 21 1 1.7544 -4.1954 9.7062 22 6 2.9260 -5.3865 11.0348 23 7 1.9026 -5.7107 11.7945 24 14 4.6309 -6.0346 11.4380 25 1 5.3211 -5.0817 12.3441 26 1 4.5132 -7.3558 12.1058 27 1 5.4139 -6.1814 10.1848 28 6 3.4332 -1.9320 8.1218 29 6 3.0050 -1.1099 7.0981 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5082 -0.8933 32 1 -0.3634 -1.0276 0.0065 33 1 1.3769 -2.2081 -2.4697 34 1 4.1670 -0.8769 -0.6578 35 1 3.4814 -2.4157 -1.2789 36 1 3.6655 -2.0413 1.3933 37 1 2.1801 -2.7719 0.7115 38 1 1.6881 -0.0054 5.0594 39 1 2.2619 -3.4753 4.7953 40 1 3.0360 -4.9300 6.6232 41 1 4.3555 -5.1021 8.6511 42 1 4.6573 -3.6720 9.6669 43 1 2.0332 -6.2861 12.5644 44 1 3.7600 -1.5028 9.0574 45 1 2.9961 -0.0384 7.2330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338187822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:54 Heat of formation + Delta-G solvation = -104.160638 kcal Electronic energy + Delta-G solvation = -27788.759816 eV Core-core repulsion = 23770.526727 eV Total energy + Delta-G solvation = -4018.233089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.31062 -40.97263 -39.66716 -39.04511 -36.80277 -36.12315 -34.93413 -32.66464 -32.49151 -31.92309 -31.82046 -29.14236 -26.75324 -26.47736 -24.65126 -23.93556 -23.30508 -22.21005 -21.55171 -20.68894 -19.14923 -18.95251 -18.69547 -18.25051 -17.66943 -17.32207 -16.81542 -16.62080 -15.98207 -15.87556 -15.82593 -15.40810 -15.10691 -14.89605 -14.57144 -14.48494 -14.38953 -14.33209 -13.97890 -13.80927 -13.48670 -13.39736 -13.32636 -13.08963 -12.80871 -12.59517 -12.52905 -12.16242 -12.10135 -11.94986 -11.76897 -11.66879 -11.58923 -11.19037 -10.89647 -10.77545 -10.62829 -9.97237 -9.82644 -8.96125 -8.28502 -6.33596 -0.06947 0.51137 0.61362 1.05004 1.38004 1.40063 1.51901 1.96499 2.28267 2.36710 2.89993 3.05479 3.05910 3.20846 3.45299 3.65899 3.97442 3.98645 4.06577 4.15945 4.26666 4.27291 4.41182 4.49271 4.52209 4.58383 4.59658 4.64813 4.80813 4.95153 4.98223 5.00709 5.06725 5.07990 5.10463 5.20976 5.28949 5.30849 5.34747 5.50731 5.58088 5.88218 5.96654 6.05664 6.11594 6.28507 6.51878 6.72763 6.76335 6.94394 7.29745 8.87907 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.002138 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.928142 B =13093.022590 C =13469.742117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.127 3.873 3 H 0.100 0.900 4 C 0.105 3.895 5 H 0.113 0.887 6 O -0.572 6.572 7 C -0.156 4.156 8 C 0.092 3.908 9 N -0.582 5.582 10 C 0.525 3.475 11 O -0.538 6.538 12 C 0.506 3.494 13 O -0.513 6.513 14 N -0.629 5.629 15 C 0.112 3.888 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.067 4.067 19 C 0.020 3.980 20 C -0.518 4.518 21 H 0.028 0.972 22 C 0.006 3.994 23 N -0.949 5.949 24 Si 0.951 3.049 25 H -0.263 1.263 26 H -0.285 1.285 27 H -0.246 1.246 28 C -0.111 4.111 29 C -0.125 4.125 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.400 0.600 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.429 0.571 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.267 0.733 44 H 0.134 0.866 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 12.991 -30.931 33.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 H 0.118 0.882 4 C 0.045 3.955 5 H 0.130 0.870 6 O -0.381 6.381 7 C -0.194 4.194 8 C -0.030 4.030 9 N -0.315 5.315 10 C 0.307 3.693 11 O -0.416 6.416 12 C 0.288 3.712 13 O -0.388 6.388 14 N -0.276 5.276 15 C 0.019 3.981 16 C -0.140 4.140 17 C -0.134 4.134 18 C -0.068 4.068 19 C -0.017 4.017 20 C -0.556 4.556 21 H 0.047 0.953 22 C -0.191 4.191 23 N -0.590 5.590 24 Si 0.774 3.226 25 H -0.188 1.188 26 H -0.210 1.210 27 H -0.169 1.169 28 C -0.129 4.129 29 C -0.145 4.145 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.251 0.749 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.269 0.731 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.152 0.848 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.148 13.033 -30.368 33.306 hybrid contribution 0.144 -0.601 0.663 0.907 sum 4.292 12.431 -29.705 32.486 Atomic orbital electron populations 1.21776 0.94122 1.02163 1.02270 1.22058 0.95753 0.96509 0.83129 0.88205 1.22762 0.87103 0.91725 0.93897 0.86952 1.86535 1.40226 1.55277 1.56070 1.23592 0.98548 1.03073 0.94226 1.22755 0.95858 0.87181 0.97200 1.48489 1.50381 1.28753 1.03898 1.19444 0.81577 0.85083 0.83190 1.90757 1.40147 1.27165 1.83498 1.20306 0.80989 0.85714 0.84207 1.90744 1.37609 1.26996 1.83496 1.42982 1.56249 1.24986 1.03431 1.17611 1.01942 0.89772 0.88798 1.21007 1.01456 0.92111 0.99411 1.20981 0.99647 1.00004 0.92732 1.20240 0.97002 0.94968 0.94544 1.18666 0.95733 0.94839 0.92450 1.21160 0.94387 1.29863 1.10227 0.95346 1.25998 1.01478 0.96009 0.95599 1.70064 1.33141 1.37974 1.17793 0.85643 0.79472 0.77911 0.79568 1.18805 1.21036 1.16937 1.21050 1.00172 0.92533 0.99150 1.21059 1.00371 1.01067 0.91977 0.93734 0.89765 0.92907 0.74902 0.88356 0.86690 0.89225 0.91379 0.73149 0.85417 0.86093 0.95156 0.94694 0.92402 0.84787 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.57 71.98 0.62 -1.91 16 2 C 0.13 1.86 3.44 45.35 0.16 2.01 16 3 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.10 0.77 4.19 31.79 0.13 0.91 16 5 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 6 O -0.57 -4.97 11.75 -148.98 -1.75 -6.72 16 7 C -0.16 -1.09 6.81 31.99 0.22 -0.87 16 8 C 0.09 1.47 6.05 86.85 0.53 2.00 16 9 N -0.58 -11.31 3.06 -789.69 -2.42 -13.73 16 10 C 0.52 12.86 7.70 87.24 0.67 13.53 16 11 O -0.54 -14.73 15.54 -3.30 -0.05 -14.78 16 12 C 0.51 13.52 7.59 87.24 0.66 14.18 16 13 O -0.51 -15.26 11.47 -3.33 -0.04 -15.30 16 14 N -0.63 -16.41 5.32 -304.84 -1.62 -18.03 16 15 C 0.11 3.49 6.27 38.21 0.24 3.73 16 16 C -0.12 -4.22 8.65 22.40 0.19 -4.03 16 17 C -0.11 -4.53 9.69 22.25 0.22 -4.31 16 18 C -0.07 -2.81 5.07 -19.84 -0.10 -2.91 16 19 C 0.02 0.96 4.17 29.10 0.12 1.09 16 20 C -0.52 -30.07 9.65 25.60 0.25 -29.82 16 21 H 0.03 1.84 7.98 -2.91 -0.02 1.82 16 22 C 0.01 0.35 5.47 84.66 0.46 0.82 16 23 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 24 Si 0.95 43.84 27.47 68.60 1.88 45.73 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 28 C -0.11 -3.99 9.69 22.25 0.22 -3.77 16 29 C -0.12 -3.75 9.96 22.40 0.22 -3.53 16 30 H 0.04 0.96 6.90 -2.39 -0.02 0.95 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.07 7.44 -2.39 -0.02 1.05 16 33 H 0.40 -0.09 9.11 -74.06 -0.67 -0.76 16 34 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.09 1.72 6.16 -2.39 -0.01 1.71 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.43 9.32 8.29 -92.71 -0.77 8.55 16 39 H 0.13 4.38 6.42 -2.91 -0.02 4.36 16 40 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.03 1.41 7.14 -2.39 -0.02 1.39 16 42 H 0.03 1.57 7.51 -2.39 -0.02 1.55 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 45 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -76.00 370.61 0.64 -75.35 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.46 Total: 19.77 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.80 Total: -12.89 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -3.74 Total: -91.17 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.84 Total: -36.79 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Total: -76.00 0.64 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338187822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.806 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds