Wall clock time and date at job start Tue Mar 31 2020 17:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49294 * 2 1 4 4 C 1.54870 * 109.49498 * 239.93679 * 2 1 3 5 5 C 1.47689 * 109.67609 * 170.15032 * 4 2 1 6 6 O 1.42553 * 113.67237 * 60.80187 * 5 4 2 7 7 C 1.40528 * 113.53959 * 272.24787 * 6 5 4 8 8 C 1.54288 * 109.87044 * 95.28754 * 7 6 5 9 9 N 1.44459 * 109.49268 * 120.08361 * 2 1 3 10 10 C 1.34781 * 118.51336 * 28.87087 * 9 2 1 11 11 O 1.21357 * 119.99861 * 7.06898 * 10 9 2 12 12 C 1.49355 * 119.99801 * 187.06544 * 10 9 2 13 13 O 1.21375 * 120.00124 * 6.48372 * 12 10 9 14 14 N 1.34783 * 119.99728 * 186.48533 * 12 10 9 15 15 C 1.39744 * 119.99910 * 175.71846 * 14 12 10 16 16 C 1.39344 * 119.95092 * 329.04328 * 15 14 12 17 17 C 1.38469 * 120.42082 * 179.72326 * 16 15 14 18 18 C 1.37696 * 120.33242 * 0.55547 * 17 16 15 19 19 C 1.40749 * 119.89166 * 359.72043 * 18 17 16 20 20 C 1.41408 * 120.20797 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99998 * 212.46607 * 20 19 18 22 22 C 1.39931 * 120.00007 * 32.46297 * 20 19 18 23 23 N 1.30827 * 120.00069 * 7.08358 * 22 20 19 24 24 Si 1.86802 * 119.99996 * 187.08957 * 22 20 19 25 25 H 1.48501 * 109.47418 * 59.99850 * 24 22 20 26 26 H 1.48496 * 109.47140 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46966 * 299.99915 * 24 22 20 28 28 C 1.38298 * 119.95289 * 149.31968 * 15 14 12 29 29 H 1.09000 * 109.46940 * 163.77132 * 1 2 3 30 30 H 1.08999 * 109.47041 * 43.77636 * 1 2 3 31 31 H 1.09001 * 109.47275 * 283.77087 * 1 2 3 32 32 H 1.08999 * 109.44014 * 290.20827 * 4 2 1 33 33 H 1.08998 * 109.43634 * 50.08887 * 4 2 1 34 34 H 1.09000 * 108.64384 * 181.88313 * 5 4 2 35 35 H 1.09008 * 108.64473 * 299.71389 * 5 4 2 36 36 H 1.09001 * 109.40182 * 215.40389 * 7 6 5 37 37 H 1.09003 * 109.40339 * 335.23907 * 7 6 5 38 38 H 1.08993 * 109.23484 * 80.92357 * 8 7 6 39 39 H 1.09000 * 109.23494 * 200.30115 * 8 7 6 40 40 H 0.96994 * 119.99860 * 355.71081 * 14 12 10 41 41 H 1.08000 * 119.79085 * 359.97438 * 16 15 14 42 42 H 1.08003 * 119.83589 * 180.27441 * 17 16 15 43 43 H 1.07993 * 120.05811 * 179.70382 * 18 17 16 44 44 H 0.97003 * 120.00503 * 180.02562 * 23 22 20 45 45 H 1.07992 * 120.16535 * 359.97188 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0468 -0.7313 -1.2635 5 6 3.5044 -0.5312 -1.3926 6 8 4.2521 -1.0426 -0.2919 7 6 4.4006 -0.1238 0.7609 8 6 3.3072 -0.3620 1.8230 9 7 2.0120 -0.6826 1.1783 10 6 1.2490 -1.6549 1.7160 11 8 0.2476 -2.0281 1.1410 12 6 1.6361 -2.2731 3.0193 13 8 2.5687 -1.8221 3.6518 14 7 0.9498 -3.3320 3.4931 15 6 1.3663 -3.9662 4.6666 16 6 2.7192 -3.9958 4.9989 17 6 3.1421 -4.6166 6.1622 18 6 2.2307 -5.2218 6.9982 19 6 0.8614 -5.2050 6.6729 20 6 -0.0803 -5.8249 7.5265 21 1 -0.9676 -6.2799 7.1117 22 6 0.1375 -5.8489 8.9085 23 7 1.1368 -5.1809 9.4249 24 14 -0.9985 -6.8350 10.0161 25 1 -0.9554 -8.2659 9.6213 26 1 -0.5559 -6.6978 11.4269 27 1 -2.3868 -6.3256 9.8805 28 6 0.4358 -4.5685 5.4936 29 1 -0.3633 -0.9867 -0.2872 30 1 -0.3633 0.7420 -0.7110 31 1 -0.3634 0.2446 0.9981 32 1 1.8332 -1.7968 -1.1788 33 1 1.5462 -0.3305 -2.1449 34 1 3.8444 -1.0237 -2.3037 35 1 3.7029 0.5368 -1.4826 36 1 5.3824 -0.2514 1.2170 37 1 4.3112 0.8904 0.3717 38 1 3.6042 -1.1917 2.4644 39 1 3.1936 0.5367 2.4293 40 1 0.1668 -3.6536 3.0196 41 1 3.4422 -3.5281 4.3470 42 1 4.1926 -4.6301 6.4127 43 1 2.5659 -5.7088 7.9020 44 1 1.2880 -5.1978 10.3830 45 1 -0.6126 -4.5497 5.2352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338380053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:26 Heat of formation + Delta-G solvation = -57.831774 kcal Electronic energy + Delta-G solvation = -28842.230821 eV Core-core repulsion = 24826.006702 eV Total energy + Delta-G solvation = -4016.224118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.28283 -39.59695 -38.49928 -37.27344 -35.81999 -34.60988 -33.67855 -33.03383 -29.87247 -29.76249 -29.12570 -28.45783 -25.34050 -24.93971 -24.10423 -22.42985 -22.11577 -21.12840 -20.41222 -19.31270 -17.87867 -17.64652 -16.69425 -16.51357 -16.43014 -15.97027 -15.60893 -15.43864 -15.00509 -14.68459 -14.63419 -14.36860 -14.20499 -13.40959 -13.26002 -13.10768 -12.96257 -12.84356 -12.54701 -12.41138 -12.25508 -11.90838 -11.77412 -11.72523 -11.36973 -11.24889 -11.14867 -11.02418 -10.96825 -10.48622 -10.35722 -10.04657 -9.93738 -9.59225 -9.39695 -9.10298 -8.82293 -8.73182 -7.46431 -6.98502 -6.66367 -4.40806 1.49107 2.41076 2.80059 2.84267 3.08545 3.11311 3.19560 3.44313 3.55747 3.68908 3.96406 4.35662 4.48771 4.64009 4.67966 4.72476 4.87807 4.89009 5.00921 5.12803 5.28981 5.37564 5.47416 5.50452 5.58034 5.60874 5.75912 5.89442 5.93438 6.08963 6.21503 6.43634 6.52256 6.63887 6.80973 6.87548 7.00329 7.00857 7.02993 7.23699 7.48399 7.50152 7.74560 7.95356 8.00971 8.05658 8.22433 8.38391 8.61427 8.88914 8.91664 10.27424 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002586 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.669376 B =10825.525333 C =11486.962935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.081 0.919 4 C -0.165 4.165 5 C 0.060 3.940 6 O -0.366 6.366 7 C 0.048 3.952 8 C 0.050 3.950 9 N -0.573 5.573 10 C 0.510 3.490 11 O -0.518 6.518 12 C 0.496 3.504 13 O -0.499 6.499 14 N -0.628 5.628 15 C 0.140 3.860 16 C -0.219 4.219 17 C -0.099 4.099 18 C -0.153 4.153 19 C 0.122 3.878 20 C -0.468 4.468 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.807 5.807 24 Si 0.913 3.087 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.267 1.267 28 C -0.231 4.231 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.412 0.588 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.280 0.720 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 10.620 -17.162 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.099 0.901 4 C -0.204 4.204 5 C -0.016 4.016 6 O -0.284 6.284 7 C -0.031 4.031 8 C -0.071 4.071 9 N -0.307 5.307 10 C 0.293 3.707 11 O -0.394 6.394 12 C 0.278 3.722 13 O -0.376 6.376 14 N -0.272 5.272 15 C 0.048 3.952 16 C -0.239 4.239 17 C -0.118 4.118 18 C -0.172 4.172 19 C 0.119 3.881 20 C -0.499 4.499 21 H 0.095 0.905 22 C -0.142 4.142 23 N -0.433 5.433 24 Si 0.737 3.263 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.252 4.252 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.158 0.842 39 H 0.093 0.907 40 H 0.248 0.752 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.091 0.909 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.726 10.658 -16.833 20.269 hybrid contribution -1.004 0.009 0.388 1.076 sum 2.722 10.667 -16.446 19.790 Atomic orbital electron populations 1.22329 0.92881 1.04288 1.02077 1.21172 0.95925 0.95149 0.83924 0.90093 1.22045 0.96737 1.03188 0.98393 1.21566 0.91707 0.98523 0.89837 1.87523 1.72496 1.40763 1.27598 1.22995 0.99077 0.92389 0.88596 1.23857 0.81398 1.06114 0.95762 1.47676 1.19989 1.35278 1.27755 1.20274 0.83816 0.80530 0.86071 1.90691 1.26472 1.60346 1.61907 1.20075 0.84054 0.81448 0.86626 1.90562 1.27758 1.61216 1.58019 1.43196 1.30094 1.28795 1.25098 1.17494 0.93738 0.97773 0.86154 1.20415 0.92995 1.09797 1.00731 1.20620 0.97917 0.98663 0.94587 1.21455 0.92722 1.02917 1.00153 1.17382 0.92430 0.88511 0.89738 1.19451 1.06398 1.32999 0.91013 0.90550 1.25847 0.95496 0.93901 0.98995 1.69768 1.26777 1.32842 1.13939 0.86301 0.80728 0.80730 0.78498 1.18958 1.20412 1.19131 1.20832 0.96339 1.08796 0.99260 0.88600 0.92833 0.92513 0.90169 0.89435 0.89709 0.93311 0.88315 0.93055 0.84173 0.90677 0.75176 0.87550 0.88755 0.86146 0.90944 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 7.82 37.16 0.29 -1.39 16 2 C 0.14 1.43 2.59 -68.03 -0.18 1.26 16 3 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 4 C -0.16 -1.47 5.29 -28.31 -0.15 -1.62 16 5 C 0.06 0.51 6.04 34.59 0.21 0.72 16 6 O -0.37 -4.14 10.23 -34.10 -0.35 -4.49 16 7 C 0.05 0.44 6.49 37.83 0.25 0.69 16 8 C 0.05 0.59 5.78 -2.44 -0.01 0.57 16 9 N -0.57 -7.28 2.53 -164.85 -0.42 -7.69 16 10 C 0.51 7.84 7.13 -11.63 -0.08 7.76 16 11 O -0.52 -8.25 12.89 5.49 0.07 -8.18 16 12 C 0.50 8.84 7.44 -11.63 -0.09 8.75 16 13 O -0.50 -9.57 10.52 5.48 0.06 -9.52 16 14 N -0.63 -11.79 5.33 -10.34 -0.06 -11.85 16 15 C 0.14 3.14 6.32 -83.82 -0.53 2.61 16 16 C -0.22 -5.02 8.68 -39.09 -0.34 -5.36 16 17 C -0.10 -2.33 10.01 -39.69 -0.40 -2.73 16 18 C -0.15 -3.94 8.63 -38.83 -0.34 -4.27 16 19 C 0.12 3.22 5.52 -106.85 -0.59 2.63 16 20 C -0.47 -12.28 9.05 -37.74 -0.34 -12.62 16 21 H 0.08 1.91 7.86 -52.49 -0.41 1.50 16 22 C 0.07 1.85 5.29 -17.35 -0.09 1.76 16 23 N -0.81 -20.96 10.91 55.55 0.61 -20.35 16 24 Si 0.91 18.76 29.57 -169.99 -5.03 13.73 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 C -0.23 -5.55 9.70 -38.67 -0.37 -5.92 16 29 H 0.10 1.19 5.99 -51.93 -0.31 0.88 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.32 7.28 -51.92 -0.38 -0.06 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.37 7.20 -51.93 -0.37 0.00 16 38 H 0.14 2.03 4.66 -54.10 -0.25 1.78 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.41 6.87 8.28 -40.82 -0.34 6.53 16 41 H 0.11 2.35 6.18 -52.49 -0.32 2.02 16 42 H 0.09 1.99 8.06 -52.48 -0.42 1.56 16 43 H 0.12 3.19 6.37 -52.49 -0.33 2.86 16 44 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 45 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -29.44 357.90 -8.54 -37.98 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.06 Total: 12.14 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.76 Total: -7.17 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.13 Total: -39.89 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.22 Total: -22.19 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.44 -8.54 -37.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338380053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.855 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds