Wall clock time and date at job start Tue Mar 31 2020 17:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49294 * 2 1 4 4 C 1.54870 * 109.49498 * 239.93679 * 2 1 3 5 5 C 1.47689 * 109.67609 * 170.15032 * 4 2 1 6 6 O 1.42553 * 113.67237 * 60.80187 * 5 4 2 7 7 C 1.40528 * 113.53959 * 272.24787 * 6 5 4 8 8 C 1.54288 * 109.87044 * 95.28754 * 7 6 5 9 9 N 1.44459 * 109.49268 * 120.08361 * 2 1 3 10 10 C 1.34781 * 118.51336 * 28.87087 * 9 2 1 11 11 O 1.21357 * 119.99861 * 7.06898 * 10 9 2 12 12 C 1.49355 * 119.99801 * 187.06544 * 10 9 2 13 13 O 1.21375 * 120.00124 * 6.48372 * 12 10 9 14 14 N 1.34783 * 119.99728 * 186.48533 * 12 10 9 15 15 C 1.39744 * 119.99910 * 175.71846 * 14 12 10 16 16 C 1.39344 * 119.95092 * 329.04328 * 15 14 12 17 17 C 1.38469 * 120.42082 * 179.72326 * 16 15 14 18 18 C 1.37696 * 120.33242 * 0.55547 * 17 16 15 19 19 C 1.40749 * 119.89166 * 359.72043 * 18 17 16 20 20 C 1.41408 * 120.20797 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99998 * 212.46607 * 20 19 18 22 22 C 1.39931 * 120.00007 * 32.46297 * 20 19 18 23 23 N 1.30827 * 120.00069 * 7.08358 * 22 20 19 24 24 Si 1.86802 * 119.99996 * 187.08957 * 22 20 19 25 25 H 1.48501 * 109.47418 * 59.99850 * 24 22 20 26 26 H 1.48496 * 109.47140 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46966 * 299.99915 * 24 22 20 28 28 C 1.38298 * 119.95289 * 149.31968 * 15 14 12 29 29 H 1.09000 * 109.46940 * 163.77132 * 1 2 3 30 30 H 1.08999 * 109.47041 * 43.77636 * 1 2 3 31 31 H 1.09001 * 109.47275 * 283.77087 * 1 2 3 32 32 H 1.08999 * 109.44014 * 290.20827 * 4 2 1 33 33 H 1.08998 * 109.43634 * 50.08887 * 4 2 1 34 34 H 1.09000 * 108.64384 * 181.88313 * 5 4 2 35 35 H 1.09008 * 108.64473 * 299.71389 * 5 4 2 36 36 H 1.09001 * 109.40182 * 215.40389 * 7 6 5 37 37 H 1.09003 * 109.40339 * 335.23907 * 7 6 5 38 38 H 1.08993 * 109.23484 * 80.92357 * 8 7 6 39 39 H 1.09000 * 109.23494 * 200.30115 * 8 7 6 40 40 H 0.96994 * 119.99860 * 355.71081 * 14 12 10 41 41 H 1.08000 * 119.79085 * 359.97438 * 16 15 14 42 42 H 1.08003 * 119.83589 * 180.27441 * 17 16 15 43 43 H 1.07993 * 120.05811 * 179.70382 * 18 17 16 44 44 H 0.97003 * 120.00503 * 180.02562 * 23 22 20 45 45 H 1.07992 * 120.16535 * 359.97188 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0468 -0.7313 -1.2635 5 6 3.5044 -0.5312 -1.3926 6 8 4.2521 -1.0426 -0.2919 7 6 4.4006 -0.1238 0.7609 8 6 3.3072 -0.3620 1.8230 9 7 2.0120 -0.6826 1.1783 10 6 1.2490 -1.6549 1.7160 11 8 0.2476 -2.0281 1.1410 12 6 1.6361 -2.2731 3.0193 13 8 2.5687 -1.8221 3.6518 14 7 0.9498 -3.3320 3.4931 15 6 1.3663 -3.9662 4.6666 16 6 2.7192 -3.9958 4.9989 17 6 3.1421 -4.6166 6.1622 18 6 2.2307 -5.2218 6.9982 19 6 0.8614 -5.2050 6.6729 20 6 -0.0803 -5.8249 7.5265 21 1 -0.9676 -6.2799 7.1117 22 6 0.1375 -5.8489 8.9085 23 7 1.1368 -5.1809 9.4249 24 14 -0.9985 -6.8350 10.0161 25 1 -0.9554 -8.2659 9.6213 26 1 -0.5559 -6.6978 11.4269 27 1 -2.3868 -6.3256 9.8805 28 6 0.4358 -4.5685 5.4936 29 1 -0.3633 -0.9867 -0.2872 30 1 -0.3633 0.7420 -0.7110 31 1 -0.3634 0.2446 0.9981 32 1 1.8332 -1.7968 -1.1788 33 1 1.5462 -0.3305 -2.1449 34 1 3.8444 -1.0237 -2.3037 35 1 3.7029 0.5368 -1.4826 36 1 5.3824 -0.2514 1.2170 37 1 4.3112 0.8904 0.3717 38 1 3.6042 -1.1917 2.4644 39 1 3.1936 0.5367 2.4293 40 1 0.1668 -3.6536 3.0196 41 1 3.4422 -3.5281 4.3470 42 1 4.1926 -4.6301 6.4127 43 1 2.5659 -5.7088 7.9020 44 1 1.2880 -5.1978 10.3830 45 1 -0.6126 -4.5497 5.2352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338380053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:25 Heat of formation + Delta-G solvation = -76.018717 kcal Electronic energy + Delta-G solvation = -28843.019466 eV Core-core repulsion = 24826.006702 eV Total energy + Delta-G solvation = -4017.012764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.46801 -40.86903 -39.56382 -38.98181 -36.94239 -36.10591 -34.91138 -34.52310 -31.78388 -30.71479 -30.18599 -29.89852 -27.23009 -26.24049 -24.96702 -23.54091 -23.11801 -22.84403 -21.98552 -20.66671 -19.43457 -18.93531 -17.71400 -17.68848 -17.46441 -17.32299 -16.96895 -16.72981 -16.52370 -16.22984 -15.73965 -15.59261 -15.42631 -14.87443 -14.69576 -14.21624 -14.17156 -14.09537 -13.89728 -13.61698 -13.37242 -13.28395 -12.99539 -12.96389 -12.82090 -12.80283 -12.53945 -12.26936 -12.07221 -11.92950 -11.66510 -11.48613 -11.32349 -11.18246 -10.89366 -10.71256 -10.02867 -9.80730 -9.38529 -8.82333 -8.54330 -6.39846 0.11519 0.95162 1.01441 1.28318 1.40779 1.52293 1.53542 2.07510 2.23247 2.34737 2.78513 2.96598 3.19270 3.66125 3.66446 3.83074 3.87352 4.14833 4.19230 4.35559 4.38386 4.43168 4.55802 4.60196 4.63275 4.74648 4.79136 4.81365 4.87526 4.97224 4.98300 5.00410 5.08806 5.13007 5.18113 5.22876 5.32214 5.57979 5.68659 5.71470 5.91027 6.03917 6.07522 6.17398 6.36429 6.40879 6.64203 6.70913 6.88231 6.93909 7.00935 8.40877 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002586 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.669376 B =10825.525333 C =11486.962935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.133 3.867 3 H 0.112 0.888 4 C -0.157 4.157 5 C 0.053 3.947 6 O -0.394 6.394 7 C 0.052 3.948 8 C 0.046 3.954 9 N -0.563 5.563 10 C 0.510 3.490 11 O -0.528 6.528 12 C 0.493 3.507 13 O -0.512 6.512 14 N -0.630 5.630 15 C 0.150 3.850 16 C -0.225 4.225 17 C -0.097 4.097 18 C -0.178 4.178 19 C 0.095 3.905 20 C -0.501 4.501 21 H 0.078 0.922 22 C 0.031 3.969 23 N -0.838 5.838 24 Si 0.986 3.014 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.262 1.262 28 C -0.244 4.244 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.421 0.579 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.286 0.714 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 12.348 -18.875 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.130 0.870 4 C -0.196 4.196 5 C -0.023 4.023 6 O -0.312 6.312 7 C -0.026 4.026 8 C -0.075 4.075 9 N -0.296 5.296 10 C 0.292 3.708 11 O -0.406 6.406 12 C 0.276 3.724 13 O -0.389 6.389 14 N -0.275 5.275 15 C 0.057 3.943 16 C -0.245 4.245 17 C -0.116 4.116 18 C -0.198 4.198 19 C 0.093 3.907 20 C -0.531 4.531 21 H 0.096 0.904 22 C -0.182 4.182 23 N -0.465 5.465 24 Si 0.807 3.193 25 H -0.183 1.183 26 H -0.194 1.194 27 H -0.186 1.186 28 C -0.265 4.265 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.259 0.741 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.823 12.422 -18.596 22.687 hybrid contribution -0.959 -0.404 0.781 1.301 sum 2.864 12.017 -17.814 21.679 Atomic orbital electron populations 1.22243 0.93302 1.03924 1.01641 1.21531 0.95670 0.96494 0.83182 0.87004 1.22015 0.97593 1.01218 0.98757 1.21769 0.90866 1.00358 0.89341 1.87507 1.72956 1.42210 1.28569 1.23046 0.98233 0.93651 0.87683 1.23863 0.81697 1.05222 0.96741 1.47831 1.19699 1.33970 1.28057 1.19832 0.84307 0.81484 0.85201 1.90710 1.27029 1.61026 1.61860 1.20683 0.83351 0.80862 0.87501 1.90577 1.28117 1.61495 1.58728 1.43144 1.30793 1.29324 1.24236 1.17514 0.93368 0.96630 0.86775 1.20598 0.93512 1.09702 1.00735 1.20864 0.98818 0.97668 0.94276 1.21392 0.93172 1.04728 1.00522 1.17738 0.92944 0.89246 0.90802 1.19746 1.06890 1.34318 0.92157 0.90361 1.26734 0.96998 0.94440 0.99995 1.69847 1.28268 1.33748 1.14637 0.85187 0.78477 0.79074 0.76537 1.18330 1.19432 1.18596 1.20960 0.97196 1.09197 0.99160 0.90756 0.89816 0.94466 0.93222 0.86524 0.88706 0.90457 0.87435 0.89979 0.87137 0.89509 0.74092 0.86617 0.86523 0.87641 0.90335 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 7.82 71.98 0.56 -2.38 16 2 C 0.13 2.32 2.59 46.01 0.12 2.44 16 3 H 0.11 1.33 8.10 -2.39 -0.02 1.31 16 4 C -0.16 -2.36 5.29 29.57 0.16 -2.21 16 5 C 0.05 0.71 6.04 70.32 0.42 1.13 16 6 O -0.39 -7.97 10.23 -144.93 -1.48 -9.45 16 7 C 0.05 0.82 6.49 72.42 0.47 1.29 16 8 C 0.05 1.00 5.78 86.49 0.50 1.50 16 9 N -0.56 -13.44 2.53 -793.83 -2.01 -15.44 16 10 C 0.51 15.52 7.13 87.24 0.62 16.14 16 11 O -0.53 -16.82 12.89 -3.27 -0.04 -16.86 16 12 C 0.49 17.67 7.44 87.24 0.65 18.32 16 13 O -0.51 -19.75 10.52 -3.32 -0.03 -19.79 16 14 N -0.63 -23.94 5.33 -304.97 -1.63 -25.57 16 15 C 0.15 6.84 6.32 38.16 0.24 7.08 16 16 C -0.22 -10.44 8.68 22.59 0.20 -10.24 16 17 C -0.10 -4.68 10.01 22.20 0.22 -4.46 16 18 C -0.18 -9.52 8.63 22.76 0.20 -9.33 16 19 C 0.10 5.20 5.52 -21.31 -0.12 5.09 16 20 C -0.50 -27.07 9.05 23.46 0.21 -26.86 16 21 H 0.08 4.03 7.86 -2.91 -0.02 4.01 16 22 C 0.03 1.60 5.29 85.25 0.45 2.05 16 23 N -0.84 -44.59 10.91 21.82 0.24 -44.35 16 24 Si 0.99 38.68 29.57 68.60 2.03 40.70 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 26 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 28 C -0.24 -12.04 9.70 22.86 0.22 -11.82 16 29 H 0.07 1.77 5.99 -2.39 -0.01 1.76 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.85 7.66 -2.39 -0.02 0.83 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.12 1.08 8.13 -2.39 -0.02 1.06 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 0.62 7.28 -2.38 -0.02 0.60 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 0.81 7.20 -2.39 -0.02 0.79 16 38 H 0.11 3.16 4.66 -36.75 -0.17 2.99 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.42 14.25 8.28 -92.71 -0.77 13.48 16 41 H 0.12 5.13 6.18 -2.91 -0.02 5.11 16 42 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.11 5.86 6.37 -2.91 -0.02 5.84 16 44 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 45 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -66.00 357.90 2.31 -63.69 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: 0.10 Total: 39.33 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.13 Total: -12.26 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.39 Total: -85.36 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.56 Total: -46.10 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.70 kcal Total: -66.00 2.31 -63.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338380053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.328 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds