Wall clock time and date at job start Tue Mar 31 2020 17:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.51543 * 2 1 4 4 C 1.53289 * 109.51694 * 239.89128 * 2 1 3 5 5 N 1.47148 * 108.38818 * 187.72546 * 4 2 1 6 6 C 1.34778 * 120.98329 * 230.51176 * 5 4 2 7 7 O 1.21359 * 120.00215 * 180.41161 * 6 5 4 8 8 C 1.49355 * 119.99693 * 0.14291 * 6 5 4 9 9 O 1.21369 * 120.00040 * 353.77341 * 8 6 5 10 10 N 1.34778 * 119.99814 * 173.77328 * 8 6 5 11 11 C 1.39726 * 120.00094 * 185.52525 * 10 8 6 12 12 C 1.38929 * 120.07710 * 208.72941 * 11 10 8 13 13 C 1.38095 * 119.92458 * 179.77202 * 12 11 10 14 14 C 1.38296 * 120.07253 * 0.48360 * 13 12 11 15 15 C 1.50695 * 119.92345 * 179.76953 * 14 13 12 16 16 C 1.50704 * 109.47287 * 270.02186 * 15 14 13 17 17 H 1.08000 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00430 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00015 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 119.99693 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47177 * 90.00000 * 20 18 16 22 22 H 1.48501 * 109.47058 * 209.99985 * 20 18 16 23 23 H 1.48502 * 109.47265 * 329.99986 * 20 18 16 24 24 C 1.38295 * 120.15489 * 359.79341 * 14 13 12 25 25 C 1.38102 * 120.07170 * 359.95174 * 24 14 13 26 26 C 1.47147 * 118.03669 * 50.78639 * 5 4 2 27 27 C 1.53716 * 108.16159 * 309.15898 * 26 5 4 28 28 O 1.42961 * 109.14414 * 52.53683 * 27 26 5 29 29 H 1.09002 * 109.47206 * 180.10229 * 1 2 3 30 30 H 1.09002 * 109.47405 * 300.10665 * 1 2 3 31 31 H 1.09003 * 109.46667 * 60.10723 * 1 2 3 32 32 H 1.09002 * 109.68452 * 67.99881 * 4 2 1 33 33 H 1.09005 * 109.68149 * 307.45057 * 4 2 1 34 34 H 0.97005 * 119.99964 * 5.53106 * 10 8 6 35 35 H 1.08004 * 120.03809 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.96750 * 180.25613 * 13 12 11 37 37 H 1.09000 * 109.47413 * 30.01975 * 15 14 13 38 38 H 1.08998 * 109.47295 * 150.02131 * 15 14 13 39 39 H 0.96998 * 119.99729 * 180.02562 * 19 18 16 40 40 H 1.07994 * 119.96416 * 179.97438 * 24 14 13 41 41 H 1.08003 * 120.03168 * 180.02562 * 25 24 14 42 42 H 1.09004 * 109.68449 * 68.94045 * 26 5 4 43 43 H 1.09004 * 109.68572 * 189.49394 * 26 5 4 44 44 H 1.08992 * 109.65688 * 292.57339 * 27 26 5 45 45 H 1.09001 * 109.48013 * 172.39708 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7248 -1.2499 5 7 3.5013 -0.8747 -1.1343 6 6 4.3188 -0.5022 -2.1390 7 8 5.5193 -0.6407 -2.0276 8 6 3.7468 0.0757 -3.3918 9 8 2.5442 0.1058 -3.5523 10 7 4.5662 0.5637 -4.3441 11 6 4.0315 1.2080 -5.4628 12 6 4.7141 1.1840 -6.6726 13 6 4.1805 1.8178 -7.7774 14 6 2.9729 2.4844 -7.6779 15 6 2.3962 3.1793 -8.8843 16 6 2.8914 4.6020 -8.9291 17 1 3.5568 4.9666 -8.1605 18 6 2.4950 5.4382 -9.9512 19 7 2.9275 6.6795 -9.9904 20 14 1.3436 4.8078 -11.2801 21 1 -0.0636 5.0488 -10.8710 22 1 1.6184 5.5220 -12.5527 23 1 1.5604 3.3514 -11.4730 24 6 2.2935 2.5152 -6.4737 25 6 2.8189 1.8790 -5.3663 26 6 4.0413 -1.4492 0.1081 27 6 3.4322 -0.6841 1.2941 28 8 2.0084 -0.6760 1.1653 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3634 0.5155 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 1.8023 -0.1396 -2.1377 33 1 1.5765 -1.7078 -1.3208 34 1 5.5272 0.4676 -4.2530 35 1 5.6595 0.6674 -6.7498 36 1 4.7086 1.7961 -8.7192 37 1 2.7091 2.6572 -9.7885 38 1 1.3081 3.1752 -8.8204 39 1 2.6483 7.2678 -10.7093 40 1 1.3509 3.0370 -6.3994 41 1 2.2876 1.9031 -4.4263 42 1 3.7737 -2.5040 0.1716 43 1 5.1262 -1.3439 0.1202 44 1 3.8032 0.3407 1.2987 45 1 3.7108 -1.1764 2.2259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339537288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:25 Heat of formation + Delta-G solvation = -63.349820 kcal Electronic energy + Delta-G solvation = -27931.477962 eV Core-core repulsion = 23915.014563 eV Total energy + Delta-G solvation = -4016.463399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53299 -39.99655 -38.81519 -38.20317 -35.81448 -34.73394 -33.29454 -33.01668 -30.97714 -30.50800 -29.60278 -27.60544 -26.81479 -25.29242 -23.59945 -22.59213 -22.42173 -21.47973 -20.38676 -20.11564 -18.33381 -17.62411 -16.98214 -16.87548 -16.80828 -16.49400 -16.06129 -15.56472 -15.19906 -14.99127 -14.82187 -14.64007 -14.19782 -14.05927 -13.57110 -13.38972 -13.28459 -13.05128 -12.76255 -12.58255 -12.55034 -12.42485 -12.22414 -11.75366 -11.64936 -11.55182 -11.52198 -11.12514 -10.93225 -10.61407 -10.58789 -10.30810 -10.06991 -9.82294 -9.39352 -9.34717 -9.08189 -8.61846 -8.47086 -7.57230 -6.10741 -4.10303 0.89343 1.80612 1.87169 1.98487 2.87887 3.04769 3.26492 3.31161 3.34610 3.36915 3.93124 4.24267 4.31241 4.38531 4.45081 4.61036 4.69949 4.72198 4.96534 5.12258 5.16040 5.19633 5.26796 5.30392 5.35816 5.40059 5.42161 5.57012 5.70475 5.76067 5.82204 5.83745 5.92935 5.99794 6.43507 6.45529 6.60653 6.64006 6.72969 6.86653 6.93644 6.97308 7.06303 7.37159 7.44824 7.51504 7.65517 7.72441 8.45434 8.94250 9.49308 11.02090 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.002317 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.896788 B =12080.970739 C =12874.227505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.063 0.937 4 C 0.026 3.974 5 N -0.584 5.584 6 C 0.513 3.487 7 O -0.520 6.520 8 C 0.506 3.494 9 O -0.494 6.494 10 N -0.628 5.628 11 C 0.098 3.902 12 C -0.135 4.135 13 C -0.103 4.103 14 C -0.033 4.033 15 C 0.013 3.987 16 C -0.514 4.514 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.104 4.104 25 C -0.117 4.117 26 C 0.072 3.928 27 C 0.051 3.949 28 O -0.380 6.380 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.078 0.922 34 H 0.419 0.581 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.029 0.971 38 H 0.025 0.975 39 H 0.264 0.736 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -17.063 20.771 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.095 4.095 5 N -0.318 5.318 6 C 0.295 3.705 7 O -0.396 6.396 8 C 0.289 3.711 9 O -0.371 6.371 10 N -0.272 5.272 11 C 0.006 3.994 12 C -0.155 4.155 13 C -0.122 4.122 14 C -0.033 4.033 15 C -0.024 4.024 16 C -0.552 4.552 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.705 3.295 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.123 4.123 25 C -0.137 4.137 26 C -0.050 4.050 27 C -0.027 4.027 28 O -0.298 6.298 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.179 0.821 33 H 0.096 0.904 34 H 0.257 0.743 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.214 -17.040 20.786 26.879 hybrid contribution 0.198 -0.163 -0.730 0.773 sum -0.016 -17.203 20.057 26.424 Atomic orbital electron populations 1.21721 0.91805 1.03334 1.03188 1.22562 0.96001 0.95343 0.84592 0.91884 1.23973 0.77826 1.04279 1.03382 1.47972 1.08124 1.60246 1.15484 1.19974 0.86493 0.79482 0.84508 1.90769 1.14173 1.54063 1.80571 1.20071 0.86870 0.79339 0.84807 1.90379 1.14122 1.55593 1.76964 1.43068 1.11081 1.53758 1.19290 1.17560 0.96775 0.99079 0.86010 1.20750 1.00640 1.02888 0.91242 1.20886 0.95803 0.97559 0.97958 1.20374 0.93531 0.92937 0.96463 1.18827 0.96104 0.96314 0.91129 1.20919 1.29990 0.92994 1.11283 0.90791 1.25002 0.95924 0.94677 0.97655 1.69897 1.44905 1.05762 1.33180 0.86805 0.81538 0.79590 0.81576 1.20136 1.21257 1.18903 1.20985 1.00550 0.98804 0.91945 1.21059 0.95355 0.97505 0.99783 1.22563 1.01128 0.98233 0.83093 1.23020 0.81484 1.00225 0.97953 1.87967 1.20518 1.77465 1.43896 0.91535 0.91420 0.90213 0.82115 0.90364 0.74321 0.86260 0.85594 0.95292 0.95704 0.92566 0.85696 0.85193 0.89930 0.87748 0.92472 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.57 37.16 0.36 -0.64 16 2 C 0.07 0.62 3.40 -26.58 -0.09 0.53 16 3 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.03 0.24 5.64 -3.54 -0.02 0.22 16 5 N -0.58 -5.81 3.01 -172.57 -0.52 -6.33 16 6 C 0.51 6.01 7.77 -11.63 -0.09 5.92 16 7 O -0.52 -6.81 15.96 5.49 0.09 -6.73 16 8 C 0.51 6.38 7.57 -11.63 -0.09 6.30 16 9 O -0.49 -6.73 10.46 5.48 0.06 -6.68 16 10 N -0.63 -7.92 5.34 -10.30 -0.06 -7.98 16 11 C 0.10 1.49 6.36 -83.75 -0.53 0.96 16 12 C -0.14 -2.06 9.95 -39.38 -0.39 -2.45 16 13 C -0.10 -1.84 9.69 -39.61 -0.38 -2.23 16 14 C -0.03 -0.66 5.07 -104.58 -0.53 -1.19 16 15 C 0.01 0.31 4.17 -29.04 -0.12 0.19 16 16 C -0.51 -14.21 9.65 -34.44 -0.33 -14.54 16 17 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 20 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 24 C -0.10 -1.93 9.69 -39.61 -0.38 -2.31 16 25 C -0.12 -1.94 8.68 -39.38 -0.34 -2.28 16 26 C 0.07 0.56 6.66 -3.32 -0.02 0.54 16 27 C 0.05 0.35 7.00 37.53 0.26 0.61 16 28 O -0.38 -3.42 10.38 -35.23 -0.37 -3.78 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.16 1.70 4.02 -56.20 -0.23 1.47 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.42 4.47 8.28 -40.82 -0.34 4.13 16 35 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 38 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.13 2.02 6.10 -52.48 -0.32 1.70 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.81 7.08 -51.93 -0.37 0.45 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -32.04 369.40 -8.18 -40.22 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.25 Total: 4.26 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.81 Total: -8.50 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.20 Total: -40.65 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.22 Total: -17.19 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.04 -8.18 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339537288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.132 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds