Wall clock time and date at job start Tue Mar 31 2020 17:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.51543 * 2 1 4 4 C 1.53289 * 109.51694 * 239.89128 * 2 1 3 5 5 N 1.47148 * 108.38818 * 187.72546 * 4 2 1 6 6 C 1.34778 * 120.98329 * 230.51176 * 5 4 2 7 7 O 1.21359 * 120.00215 * 180.41161 * 6 5 4 8 8 C 1.49355 * 119.99693 * 0.14291 * 6 5 4 9 9 O 1.21369 * 120.00040 * 353.77341 * 8 6 5 10 10 N 1.34778 * 119.99814 * 173.77328 * 8 6 5 11 11 C 1.39726 * 120.00094 * 185.52525 * 10 8 6 12 12 C 1.38929 * 120.07710 * 208.72941 * 11 10 8 13 13 C 1.38095 * 119.92458 * 179.77202 * 12 11 10 14 14 C 1.38296 * 120.07253 * 0.48360 * 13 12 11 15 15 C 1.50695 * 119.92345 * 179.76953 * 14 13 12 16 16 C 1.50704 * 109.47287 * 270.02186 * 15 14 13 17 17 H 1.08000 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00430 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00015 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 119.99693 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47177 * 90.00000 * 20 18 16 22 22 H 1.48501 * 109.47058 * 209.99985 * 20 18 16 23 23 H 1.48502 * 109.47265 * 329.99986 * 20 18 16 24 24 C 1.38295 * 120.15489 * 359.79341 * 14 13 12 25 25 C 1.38102 * 120.07170 * 359.95174 * 24 14 13 26 26 C 1.47147 * 118.03669 * 50.78639 * 5 4 2 27 27 C 1.53716 * 108.16159 * 309.15898 * 26 5 4 28 28 O 1.42961 * 109.14414 * 52.53683 * 27 26 5 29 29 H 1.09002 * 109.47206 * 180.10229 * 1 2 3 30 30 H 1.09002 * 109.47405 * 300.10665 * 1 2 3 31 31 H 1.09003 * 109.46667 * 60.10723 * 1 2 3 32 32 H 1.09002 * 109.68452 * 67.99881 * 4 2 1 33 33 H 1.09005 * 109.68149 * 307.45057 * 4 2 1 34 34 H 0.97005 * 119.99964 * 5.53106 * 10 8 6 35 35 H 1.08004 * 120.03809 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.96750 * 180.25613 * 13 12 11 37 37 H 1.09000 * 109.47413 * 30.01975 * 15 14 13 38 38 H 1.08998 * 109.47295 * 150.02131 * 15 14 13 39 39 H 0.96998 * 119.99729 * 180.02562 * 19 18 16 40 40 H 1.07994 * 119.96416 * 179.97438 * 24 14 13 41 41 H 1.08003 * 120.03168 * 180.02562 * 25 24 14 42 42 H 1.09004 * 109.68449 * 68.94045 * 26 5 4 43 43 H 1.09004 * 109.68572 * 189.49394 * 26 5 4 44 44 H 1.08992 * 109.65688 * 292.57339 * 27 26 5 45 45 H 1.09001 * 109.48013 * 172.39708 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7248 -1.2499 5 7 3.5013 -0.8747 -1.1343 6 6 4.3188 -0.5022 -2.1390 7 8 5.5193 -0.6407 -2.0276 8 6 3.7468 0.0757 -3.3918 9 8 2.5442 0.1058 -3.5523 10 7 4.5662 0.5637 -4.3441 11 6 4.0315 1.2080 -5.4628 12 6 4.7141 1.1840 -6.6726 13 6 4.1805 1.8178 -7.7774 14 6 2.9729 2.4844 -7.6779 15 6 2.3962 3.1793 -8.8843 16 6 2.8914 4.6020 -8.9291 17 1 3.5568 4.9666 -8.1605 18 6 2.4950 5.4382 -9.9512 19 7 2.9275 6.6795 -9.9904 20 14 1.3436 4.8078 -11.2801 21 1 -0.0636 5.0488 -10.8710 22 1 1.6184 5.5220 -12.5527 23 1 1.5604 3.3514 -11.4730 24 6 2.2935 2.5152 -6.4737 25 6 2.8189 1.8790 -5.3663 26 6 4.0413 -1.4492 0.1081 27 6 3.4322 -0.6841 1.2941 28 8 2.0084 -0.6760 1.1653 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3634 0.5155 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 1.8023 -0.1396 -2.1377 33 1 1.5765 -1.7078 -1.3208 34 1 5.5272 0.4676 -4.2530 35 1 5.6595 0.6674 -6.7498 36 1 4.7086 1.7961 -8.7192 37 1 2.7091 2.6572 -9.7885 38 1 1.3081 3.1752 -8.8204 39 1 2.6483 7.2678 -10.7093 40 1 1.3509 3.0370 -6.3994 41 1 2.2876 1.9031 -4.4263 42 1 3.7737 -2.5040 0.1716 43 1 5.1262 -1.3439 0.1202 44 1 3.8032 0.3407 1.2987 45 1 3.7108 -1.1764 2.2259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339537288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:24 Heat of formation + Delta-G solvation = -84.560654 kcal Electronic energy + Delta-G solvation = -27932.397733 eV Core-core repulsion = 23915.014563 eV Total energy + Delta-G solvation = -4017.383170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.49636 -40.95647 -39.76941 -39.30620 -36.88340 -35.74640 -34.91349 -33.91334 -32.65599 -31.84054 -30.32706 -29.09952 -27.61889 -26.32765 -24.78764 -23.99316 -23.52241 -22.34073 -21.70307 -21.13663 -19.28719 -18.94750 -18.62498 -17.95414 -17.56002 -17.45654 -16.96029 -16.68372 -16.23788 -16.05663 -15.94315 -15.70656 -15.48688 -15.21352 -14.87311 -14.48140 -14.39138 -14.33972 -13.94704 -13.93320 -13.55288 -13.43367 -13.23999 -13.08880 -12.80407 -12.52514 -12.42129 -12.26108 -12.20100 -11.88906 -11.84816 -11.76846 -11.55637 -11.29639 -11.16672 -10.77006 -10.34278 -9.84006 -9.79437 -8.93564 -8.28013 -6.32948 -0.14699 0.53146 0.61405 1.00034 1.38884 1.40214 1.52034 1.88564 2.15114 2.37083 2.71328 2.90782 3.00743 3.06589 3.60056 3.82648 3.97271 3.98808 4.07232 4.08786 4.11276 4.28534 4.33574 4.37982 4.51156 4.54896 4.60953 4.65176 4.75850 4.83662 4.87558 4.97334 5.01660 5.05043 5.09664 5.20551 5.27353 5.31573 5.34949 5.53844 5.59435 5.76067 5.96480 6.01216 6.09452 6.11496 6.29207 6.47031 6.69989 6.73676 7.30545 8.88355 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.002317 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.896788 B =12080.970739 C =12874.227505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.058 0.942 4 C 0.028 3.972 5 N -0.581 5.581 6 C 0.515 3.485 7 O -0.536 6.536 8 C 0.507 3.493 9 O -0.503 6.503 10 N -0.623 5.623 11 C 0.110 3.890 12 C -0.127 4.127 13 C -0.111 4.111 14 C -0.068 4.068 15 C 0.020 3.980 16 C -0.518 4.518 17 H 0.029 0.971 18 C 0.007 3.993 19 N -0.950 5.950 20 Si 0.950 3.050 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.244 1.244 24 C -0.114 4.114 25 C -0.122 4.122 26 C 0.070 3.930 27 C 0.050 3.950 28 O -0.390 6.390 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.085 0.915 34 H 0.430 0.570 35 H 0.156 0.844 36 H 0.132 0.868 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.267 0.733 40 H 0.123 0.877 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.055 0.945 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -19.477 21.730 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.076 0.924 4 C -0.093 4.093 5 N -0.314 5.314 6 C 0.297 3.703 7 O -0.414 6.414 8 C 0.291 3.709 9 O -0.381 6.381 10 N -0.268 5.268 11 C 0.017 3.983 12 C -0.147 4.147 13 C -0.130 4.130 14 C -0.069 4.069 15 C -0.018 4.018 16 C -0.556 4.556 17 H 0.047 0.953 18 C -0.190 4.190 19 N -0.590 5.590 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.167 1.167 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.052 4.052 27 C -0.027 4.027 28 O -0.310 6.310 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.270 0.730 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.073 0.927 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.450 -19.486 21.789 29.235 hybrid contribution 0.336 0.550 -0.827 1.049 sum -0.114 -18.936 20.962 28.249 Atomic orbital electron populations 1.21724 0.90763 1.03705 1.03625 1.22571 0.96862 0.94841 0.84149 0.92428 1.23930 0.77461 1.04510 1.03354 1.48113 1.08344 1.59244 1.15664 1.19734 0.86366 0.79687 0.84462 1.90766 1.14651 1.55102 1.80845 1.20328 0.86694 0.78916 0.84993 1.90406 1.14641 1.55798 1.77209 1.43008 1.11753 1.53532 1.18548 1.17636 0.96025 0.97793 0.86854 1.21026 1.01644 1.01870 0.90116 1.21026 0.95101 0.97559 0.99270 1.20242 0.95324 0.95272 0.96027 1.18669 0.96310 0.93753 0.93027 1.21164 1.28904 0.95582 1.09901 0.95261 1.25979 0.97862 0.94715 1.00458 1.70058 1.46985 1.07449 1.34513 0.85665 0.79145 0.79990 0.77930 1.19160 1.21015 1.16707 1.21016 1.00746 0.99348 0.92191 1.21142 0.96109 0.97491 0.99447 1.22761 1.01232 0.98939 0.82220 1.23182 0.80450 1.00365 0.98689 1.87961 1.21646 1.77462 1.43889 0.91184 0.91041 0.89750 0.83254 0.89696 0.72990 0.82645 0.85038 0.94729 0.95238 0.92417 0.85927 0.84374 0.88664 0.87652 0.92707 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 71.98 0.69 -1.06 16 2 C 0.07 1.15 3.40 30.69 0.10 1.25 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 4 C 0.03 0.48 5.64 86.35 0.49 0.97 16 5 N -0.58 -10.56 3.01 -818.23 -2.47 -13.02 16 6 C 0.52 11.24 7.77 87.24 0.68 11.92 16 7 O -0.54 -13.15 15.96 -3.27 -0.05 -13.20 16 8 C 0.51 11.99 7.57 87.24 0.66 12.65 16 9 O -0.50 -13.07 10.46 -3.31 -0.03 -13.11 16 10 N -0.62 -14.50 5.34 -304.84 -1.63 -16.12 16 11 C 0.11 3.17 6.36 38.21 0.24 3.42 16 12 C -0.13 -3.60 9.95 22.40 0.22 -3.37 16 13 C -0.11 -3.87 9.69 22.25 0.22 -3.65 16 14 C -0.07 -2.76 5.07 -19.84 -0.10 -2.86 16 15 C 0.02 0.91 4.17 29.10 0.12 1.03 16 16 C -0.52 -29.51 9.65 25.60 0.25 -29.27 16 17 H 0.03 1.87 7.98 -2.91 -0.02 1.84 16 18 C 0.01 0.39 5.47 84.66 0.46 0.85 16 19 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 20 Si 0.95 43.30 27.47 68.60 1.88 45.19 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 24 C -0.11 -4.26 9.69 22.25 0.22 -4.04 16 25 C -0.12 -3.96 8.68 22.40 0.19 -3.76 16 26 C 0.07 0.94 6.66 86.50 0.58 1.51 16 27 C 0.05 0.58 7.00 72.22 0.51 1.09 16 28 O -0.39 -6.26 10.38 -148.98 -1.55 -7.81 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.15 2.99 4.02 -70.00 -0.28 2.71 16 33 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.43 8.19 8.28 -92.70 -0.77 7.42 16 35 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.03 1.55 7.14 -2.39 -0.02 1.53 16 38 H 0.03 1.32 7.51 -2.39 -0.02 1.30 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.14 4.20 6.10 -2.91 -0.02 4.18 16 42 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.11 1.43 7.08 -2.39 -0.02 1.42 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 45 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -70.30 369.40 1.90 -68.39 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.07 Total: 21.80 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.52 Total: -13.33 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -3.80 Total: -87.94 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.63 Total: -34.11 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.19 kcal Total: -70.30 1.90 -68.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339537288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.167 kcal (2) G-P(sol) polarization free energy of solvation -70.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds