Wall clock time and date at job start Tue Mar 31 2020 17:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.51326 * 2 1 4 4 C 1.53713 * 109.44697 * 120.28266 * 2 1 3 5 5 N 1.47146 * 108.16562 * 172.37008 * 4 2 1 6 6 C 1.34776 * 120.98091 * 129.43083 * 5 4 2 7 7 O 1.21362 * 120.00045 * 351.99022 * 6 5 4 8 8 C 1.49358 * 119.99941 * 171.98454 * 6 5 4 9 9 O 1.21373 * 119.99727 * 353.36771 * 8 6 5 10 10 N 1.34774 * 119.99524 * 173.08384 * 8 6 5 11 11 C 1.39725 * 119.99435 * 173.64322 * 10 8 6 12 12 C 1.38927 * 120.08108 * 326.49027 * 11 10 8 13 13 C 1.38093 * 119.92609 * 179.69866 * 12 11 10 14 14 C 1.38289 * 120.07662 * 0.57420 * 13 12 11 15 15 C 1.50704 * 119.93036 * 179.69967 * 14 13 12 16 16 C 1.50703 * 109.47032 * 270.02277 * 15 14 13 17 17 H 1.08004 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99938 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00233 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47038 * 60.00322 * 20 18 16 22 22 H 1.48500 * 109.47431 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47136 * 300.00018 * 20 18 16 24 24 C 1.38300 * 120.15275 * 359.71871 * 14 13 12 25 25 C 1.38095 * 120.07285 * 359.97438 * 24 14 13 26 26 C 1.47156 * 118.03743 * 309.16543 * 5 4 2 27 27 C 1.53293 * 108.38593 * 50.77915 * 26 5 4 28 28 O 1.42963 * 109.22590 * 307.70256 * 27 26 5 29 29 H 1.09001 * 109.47095 * 180.10887 * 1 2 3 30 30 H 1.09004 * 109.46681 * 300.10357 * 1 2 3 31 31 H 1.08994 * 109.47153 * 60.10096 * 1 2 3 32 32 H 1.09006 * 109.83444 * 52.68972 * 4 2 1 33 33 H 1.08992 * 109.74871 * 292.00815 * 4 2 1 34 34 H 0.96996 * 120.00527 * 353.64807 * 10 8 6 35 35 H 1.08007 * 120.03603 * 359.96950 * 12 11 10 36 36 H 1.07998 * 119.96568 * 180.26825 * 13 12 11 37 37 H 1.09002 * 109.46253 * 30.01655 * 15 14 13 38 38 H 1.08999 * 109.47456 * 150.02032 * 15 14 13 39 39 H 0.96998 * 120.00467 * 179.97438 * 19 18 16 40 40 H 1.07995 * 119.96361 * 180.02562 * 24 14 13 41 41 H 1.08002 * 120.03695 * 180.02562 * 25 24 14 42 42 H 1.09003 * 109.68169 * 170.50906 * 26 5 4 43 43 H 1.09002 * 109.67745 * 291.01924 * 26 5 4 44 44 H 1.09005 * 109.50993 * 67.62252 * 27 26 5 45 45 H 1.08994 * 109.51322 * 187.77543 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0417 -0.7309 1.2517 5 7 3.5012 -0.8767 1.1332 6 6 4.3193 -0.5051 2.1377 7 8 3.8718 0.0895 3.0964 8 6 5.7767 -0.8250 2.0710 9 8 6.2045 -1.5223 1.1744 10 7 6.6175 -0.3347 3.0032 11 6 7.9548 -0.7393 3.0198 12 6 8.2961 -2.0312 2.6396 13 6 9.6194 -2.4259 2.6512 14 6 10.6032 -1.5404 3.0520 15 6 12.0456 -1.9767 3.0699 16 6 12.3762 -2.5635 4.4180 17 1 11.6178 -2.6150 5.1852 18 6 13.6468 -3.0347 4.6719 19 7 14.5705 -2.9715 3.7378 20 14 14.0569 -3.7615 6.3431 21 1 13.1816 -4.9329 6.6017 22 1 15.4782 -4.1915 6.3607 23 1 13.8371 -2.7373 7.3957 24 6 10.2664 -0.2554 3.4369 25 6 8.9457 0.1478 3.4216 26 6 4.0407 -1.4458 -0.1120 27 6 3.4312 -0.6850 -1.2951 28 8 2.0075 -0.6759 -1.1658 29 1 -0.3633 -1.0277 0.0020 30 1 -0.3633 0.5155 0.8891 31 1 -0.3633 0.5122 -0.8908 32 1 1.5788 -1.7154 1.3203 33 1 1.8019 -0.1493 2.1417 34 1 6.2944 0.2990 3.6626 35 1 7.5278 -2.7249 2.3312 36 1 9.8859 -3.4287 2.3517 37 1 12.2074 -2.7280 2.2970 38 1 12.6878 -1.1165 2.8807 39 1 15.4645 -3.3027 3.9165 40 1 11.0372 0.4336 3.7489 41 1 8.6834 1.1515 3.7219 42 1 5.1252 -1.3376 -0.1254 43 1 3.7762 -2.5011 -0.1781 44 1 3.8029 0.3397 -1.2994 45 1 3.7090 -1.1777 -2.2268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339537289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:30 Heat of formation + Delta-G solvation = -71.930728 kcal Electronic energy + Delta-G solvation = -27673.841171 eV Core-core repulsion = 23657.005676 eV Total energy + Delta-G solvation = -4016.835495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45950 -39.97826 -38.78019 -38.11156 -35.77587 -34.68997 -33.39662 -33.06293 -30.65378 -30.43299 -29.23615 -27.94569 -26.77129 -24.56642 -23.78684 -22.84805 -22.53282 -21.50581 -20.43834 -20.03561 -18.27722 -17.57086 -17.01963 -16.87233 -16.43472 -16.33442 -15.85646 -15.75037 -15.11305 -15.07221 -14.83709 -14.44488 -14.28140 -14.06828 -13.62016 -13.31751 -13.17050 -12.95862 -12.78600 -12.70037 -12.53876 -12.26735 -12.07159 -11.70527 -11.58562 -11.44732 -11.33046 -11.14866 -10.84573 -10.64234 -10.59606 -10.43657 -10.15857 -9.70534 -9.44064 -9.30669 -9.06976 -8.45453 -8.40452 -7.53793 -6.06621 -4.11055 0.94677 1.84391 1.93516 2.03144 2.90283 3.07334 3.28947 3.30462 3.34791 3.37853 3.98807 4.18004 4.31758 4.48851 4.49102 4.52846 4.61907 4.76805 4.97045 5.04528 5.14547 5.22065 5.26855 5.32286 5.36041 5.40369 5.42355 5.53383 5.64750 5.74762 5.83753 5.93865 5.95680 6.08722 6.49686 6.52573 6.65675 6.68232 6.71056 7.05798 7.07135 7.13140 7.40264 7.44999 7.57634 7.78214 7.79236 7.88655 8.28016 8.93891 9.52934 11.02919 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.002030 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.723835 B =13788.107217 C =14073.743314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 H 0.065 0.935 4 C 0.079 3.921 5 N -0.587 5.587 6 C 0.514 3.486 7 O -0.519 6.519 8 C 0.504 3.496 9 O -0.495 6.495 10 N -0.630 5.630 11 C 0.094 3.906 12 C -0.113 4.113 13 C -0.107 4.107 14 C -0.035 4.035 15 C 0.047 3.953 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.107 4.107 25 C -0.134 4.134 26 C 0.039 3.961 27 C 0.048 3.952 28 O -0.378 6.378 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.263 0.737 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.987 7.017 -8.013 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.083 0.917 4 C -0.043 4.043 5 N -0.321 5.321 6 C 0.296 3.704 7 O -0.395 6.395 8 C 0.287 3.713 9 O -0.372 6.372 10 N -0.275 5.275 11 C 0.002 3.998 12 C -0.133 4.133 13 C -0.126 4.126 14 C -0.036 4.036 15 C 0.010 3.990 16 C -0.551 4.551 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.126 4.126 25 C -0.154 4.154 26 C -0.083 4.083 27 C -0.029 4.029 28 O -0.297 6.297 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.164 0.836 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.900 6.705 -8.288 28.008 hybrid contribution 0.269 -0.082 1.442 1.469 sum -25.630 6.623 -6.846 27.343 Atomic orbital electron populations 1.21737 0.91945 1.03412 1.03052 1.22551 0.95785 0.95334 0.84719 0.91729 1.22608 0.78962 1.02519 1.00256 1.47951 1.06674 1.61241 1.16275 1.20053 0.87333 0.79867 0.83128 1.90766 1.76917 1.39182 1.32589 1.20045 0.87006 0.81797 0.82498 1.90563 1.77175 1.37167 1.32255 1.43058 1.08343 1.44711 1.31430 1.17501 0.81553 0.94228 1.06530 1.20957 0.97132 0.93810 1.01375 1.20998 0.91404 0.99984 1.00213 1.20794 0.98850 0.92306 0.91634 1.18375 0.85544 0.97199 0.97868 1.21010 0.96132 1.40215 0.97790 0.92482 1.25011 0.96324 0.95889 0.97083 1.69944 1.03452 1.46673 1.33150 0.86590 0.77283 0.79623 0.84145 1.20161 1.21230 1.20168 1.20924 0.94709 0.96777 1.00198 1.20777 0.92495 0.98128 1.04004 1.23523 1.04528 0.98321 0.81895 1.23070 0.80749 1.00320 0.98793 1.87972 1.21292 1.77360 1.43113 0.91402 0.90613 0.91222 0.89910 0.87778 0.74522 0.85890 0.85799 0.95165 0.95185 0.92747 0.85691 0.86454 0.83564 0.90088 0.92653 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.57 37.16 0.36 -0.39 16 2 C 0.07 0.55 3.41 -26.36 -0.09 0.46 16 3 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.08 0.64 5.97 -3.32 -0.02 0.62 16 5 N -0.59 -5.89 3.01 -172.56 -0.52 -6.41 16 6 C 0.51 6.11 7.75 -11.63 -0.09 6.02 16 7 O -0.52 -6.91 16.00 5.49 0.09 -6.82 16 8 C 0.50 6.55 7.45 -11.63 -0.09 6.46 16 9 O -0.50 -7.08 10.96 5.48 0.06 -7.02 16 10 N -0.63 -8.19 5.31 -10.29 -0.05 -8.25 16 11 C 0.09 1.47 6.27 -83.75 -0.52 0.95 16 12 C -0.11 -1.95 8.65 -39.38 -0.34 -2.29 16 13 C -0.11 -2.08 9.69 -39.62 -0.38 -2.46 16 14 C -0.04 -0.74 5.07 -104.58 -0.53 -1.27 16 15 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 16 C -0.51 -14.08 9.09 -34.44 -0.31 -14.40 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.11 -1.98 9.69 -39.61 -0.38 -2.37 16 25 C -0.13 -2.10 9.96 -39.38 -0.39 -2.49 16 26 C 0.04 0.35 6.13 -3.53 -0.02 0.33 16 27 C 0.05 0.37 6.98 37.31 0.26 0.63 16 28 O -0.38 -3.33 10.38 -35.23 -0.37 -3.69 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.86 7.06 -51.93 -0.37 0.49 16 34 H 0.42 4.57 8.34 -40.82 -0.34 4.23 16 35 H 0.12 2.04 6.48 -52.48 -0.34 1.70 16 36 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.15 1.52 4.48 -54.02 -0.24 1.28 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -31.38 373.96 -8.57 -39.95 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.32 Total: 3.24 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.81 Total: -7.63 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.16 Total: -39.94 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.22 Total: -17.53 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.38 -8.57 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339537289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.977 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds