Wall clock time and date at job start Tue Mar 31 2020 17:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.51326 * 2 1 4 4 C 1.53713 * 109.44697 * 120.28266 * 2 1 3 5 5 N 1.47146 * 108.16562 * 172.37008 * 4 2 1 6 6 C 1.34776 * 120.98091 * 129.43083 * 5 4 2 7 7 O 1.21362 * 120.00045 * 351.99022 * 6 5 4 8 8 C 1.49358 * 119.99941 * 171.98454 * 6 5 4 9 9 O 1.21373 * 119.99727 * 353.36771 * 8 6 5 10 10 N 1.34774 * 119.99524 * 173.08384 * 8 6 5 11 11 C 1.39725 * 119.99435 * 173.64322 * 10 8 6 12 12 C 1.38927 * 120.08108 * 326.49027 * 11 10 8 13 13 C 1.38093 * 119.92609 * 179.69866 * 12 11 10 14 14 C 1.38289 * 120.07662 * 0.57420 * 13 12 11 15 15 C 1.50704 * 119.93036 * 179.69967 * 14 13 12 16 16 C 1.50703 * 109.47032 * 270.02277 * 15 14 13 17 17 H 1.08004 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99938 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00233 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47038 * 60.00322 * 20 18 16 22 22 H 1.48500 * 109.47431 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47136 * 300.00018 * 20 18 16 24 24 C 1.38300 * 120.15275 * 359.71871 * 14 13 12 25 25 C 1.38095 * 120.07285 * 359.97438 * 24 14 13 26 26 C 1.47156 * 118.03743 * 309.16543 * 5 4 2 27 27 C 1.53293 * 108.38593 * 50.77915 * 26 5 4 28 28 O 1.42963 * 109.22590 * 307.70256 * 27 26 5 29 29 H 1.09001 * 109.47095 * 180.10887 * 1 2 3 30 30 H 1.09004 * 109.46681 * 300.10357 * 1 2 3 31 31 H 1.08994 * 109.47153 * 60.10096 * 1 2 3 32 32 H 1.09006 * 109.83444 * 52.68972 * 4 2 1 33 33 H 1.08992 * 109.74871 * 292.00815 * 4 2 1 34 34 H 0.96996 * 120.00527 * 353.64807 * 10 8 6 35 35 H 1.08007 * 120.03603 * 359.96950 * 12 11 10 36 36 H 1.07998 * 119.96568 * 180.26825 * 13 12 11 37 37 H 1.09002 * 109.46253 * 30.01655 * 15 14 13 38 38 H 1.08999 * 109.47456 * 150.02032 * 15 14 13 39 39 H 0.96998 * 120.00467 * 179.97438 * 19 18 16 40 40 H 1.07995 * 119.96361 * 180.02562 * 24 14 13 41 41 H 1.08002 * 120.03695 * 180.02562 * 25 24 14 42 42 H 1.09003 * 109.68169 * 170.50906 * 26 5 4 43 43 H 1.09002 * 109.67745 * 291.01924 * 26 5 4 44 44 H 1.09005 * 109.50993 * 67.62252 * 27 26 5 45 45 H 1.08994 * 109.51322 * 187.77543 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0417 -0.7309 1.2517 5 7 3.5012 -0.8767 1.1332 6 6 4.3193 -0.5051 2.1377 7 8 3.8718 0.0895 3.0964 8 6 5.7767 -0.8250 2.0710 9 8 6.2045 -1.5223 1.1744 10 7 6.6175 -0.3347 3.0032 11 6 7.9548 -0.7393 3.0198 12 6 8.2961 -2.0312 2.6396 13 6 9.6194 -2.4259 2.6512 14 6 10.6032 -1.5404 3.0520 15 6 12.0456 -1.9767 3.0699 16 6 12.3762 -2.5635 4.4180 17 1 11.6178 -2.6150 5.1852 18 6 13.6468 -3.0347 4.6719 19 7 14.5705 -2.9715 3.7378 20 14 14.0569 -3.7615 6.3431 21 1 13.1816 -4.9329 6.6017 22 1 15.4782 -4.1915 6.3607 23 1 13.8371 -2.7373 7.3957 24 6 10.2664 -0.2554 3.4369 25 6 8.9457 0.1478 3.4216 26 6 4.0407 -1.4458 -0.1120 27 6 3.4312 -0.6850 -1.2951 28 8 2.0075 -0.6759 -1.1658 29 1 -0.3633 -1.0277 0.0020 30 1 -0.3633 0.5155 0.8891 31 1 -0.3633 0.5122 -0.8908 32 1 1.5788 -1.7154 1.3203 33 1 1.8019 -0.1493 2.1417 34 1 6.2944 0.2990 3.6626 35 1 7.5278 -2.7249 2.3312 36 1 9.8859 -3.4287 2.3517 37 1 12.2074 -2.7280 2.2970 38 1 12.6878 -1.1165 2.8807 39 1 15.4645 -3.3027 3.9165 40 1 11.0372 0.4336 3.7489 41 1 8.6834 1.1515 3.7219 42 1 5.1252 -1.3376 -0.1254 43 1 3.7762 -2.5011 -0.1781 44 1 3.8029 0.3397 -1.2994 45 1 3.7090 -1.1777 -2.2268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339537289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:29 Heat of formation + Delta-G solvation = -91.709685 kcal Electronic energy + Delta-G solvation = -27674.698851 eV Core-core repulsion = 23657.005676 eV Total energy + Delta-G solvation = -4017.693175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.44108 -40.95672 -39.77375 -39.24876 -36.86376 -35.76028 -34.95791 -33.96190 -32.32180 -31.84323 -29.92173 -29.05215 -28.09648 -25.86804 -24.64752 -24.19479 -23.87412 -22.38019 -21.73451 -21.08832 -19.24557 -18.60922 -18.49075 -18.01551 -17.54553 -17.33781 -16.86258 -16.69639 -16.53697 -15.99632 -15.94882 -15.70187 -15.32857 -15.22570 -14.66851 -14.53303 -14.48925 -14.28507 -13.97576 -13.70000 -13.30281 -13.26350 -13.19726 -13.18108 -12.79234 -12.59651 -12.49129 -12.43939 -12.22049 -12.06730 -11.82339 -11.69442 -11.49879 -11.27606 -11.17208 -10.58962 -10.44030 -9.84123 -9.79730 -8.98849 -8.18080 -6.31971 -0.12001 0.52697 0.60482 1.01217 1.41098 1.43282 1.51501 1.88264 2.16548 2.40585 2.70976 2.93969 3.03132 3.12005 3.56399 3.85369 3.95369 3.99683 4.04188 4.07856 4.12251 4.32677 4.36921 4.40029 4.52756 4.54573 4.62143 4.67014 4.69249 4.86441 4.89268 4.98219 4.99674 5.08469 5.23649 5.28054 5.30888 5.37665 5.39432 5.54804 5.74439 5.76095 5.98511 6.05883 6.08892 6.10533 6.21800 6.47352 6.71799 6.80581 7.36436 8.90065 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.002030 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.723835 B =13788.107217 C =14073.743314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 H 0.063 0.937 4 C 0.077 3.923 5 N -0.583 5.583 6 C 0.517 3.483 7 O -0.534 6.534 8 C 0.506 3.494 9 O -0.508 6.508 10 N -0.624 5.624 11 C 0.110 3.890 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.067 4.067 15 C 0.056 3.944 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.964 3.036 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.112 4.112 25 C -0.121 4.121 26 C 0.040 3.960 27 C 0.050 3.950 28 O -0.390 6.390 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.430 0.570 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.003 0.997 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.525 7.815 -7.288 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.081 0.919 4 C -0.045 4.045 5 N -0.316 5.316 6 C 0.299 3.701 7 O -0.412 6.412 8 C 0.289 3.711 9 O -0.385 6.385 10 N -0.271 5.271 11 C 0.017 3.983 12 C -0.135 4.135 13 C -0.135 4.135 14 C -0.068 4.068 15 C 0.019 3.981 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.194 4.194 19 N -0.569 5.569 20 Si 0.789 3.211 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.192 1.192 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.082 4.082 27 C -0.027 4.027 28 O -0.309 6.309 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.270 0.730 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.021 0.979 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.175 0.825 42 H 0.152 0.848 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.481 7.511 -7.577 30.414 hybrid contribution 0.924 -0.303 1.115 1.480 sum -27.557 7.209 -6.462 29.208 Atomic orbital electron populations 1.21749 0.90250 1.03818 1.03934 1.22663 0.97078 0.94882 0.83821 0.91920 1.22788 0.77591 1.03266 1.00806 1.48088 1.07452 1.60130 1.15942 1.19766 0.86753 0.80128 0.83435 1.90764 1.76916 1.40238 1.33277 1.20318 0.87550 0.81194 0.82039 1.90587 1.77616 1.37532 1.32735 1.42983 1.07177 1.45008 1.31947 1.17550 0.82936 0.93473 1.04360 1.20983 0.96153 0.94842 1.01509 1.20931 0.92187 0.99601 1.00781 1.20475 0.96739 0.94277 0.95311 1.18112 0.88370 0.95398 0.96239 1.21352 0.96324 1.40200 0.98710 0.92602 1.25914 0.96213 0.96270 1.01004 1.70071 1.03864 1.47703 1.35283 0.85514 0.77163 0.79010 0.79461 1.19462 1.20694 1.19151 1.20989 0.96349 0.95675 1.00042 1.21039 0.90914 0.99693 1.02376 1.23513 1.03844 0.98794 0.82009 1.23123 0.80346 1.00388 0.98837 1.87971 1.21668 1.77571 1.43692 0.91228 0.89080 0.91016 0.88940 0.87713 0.73012 0.85196 0.86550 0.97892 0.97369 0.92603 0.85368 0.82470 0.84790 0.89674 0.92532 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.57 71.98 0.69 -0.44 16 2 C 0.07 0.93 3.41 30.83 0.11 1.04 16 3 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 4 C 0.08 1.09 5.97 86.50 0.52 1.61 16 5 N -0.58 -10.65 3.01 -818.22 -2.47 -13.11 16 6 C 0.52 11.36 7.75 87.24 0.68 12.03 16 7 O -0.53 -13.17 16.00 -3.29 -0.05 -13.22 16 8 C 0.51 12.22 7.45 87.24 0.65 12.87 16 9 O -0.51 -13.83 10.96 -3.32 -0.04 -13.87 16 10 N -0.62 -14.72 5.31 -304.83 -1.62 -16.34 16 11 C 0.11 3.23 6.27 38.22 0.24 3.47 16 12 C -0.12 -3.89 8.65 22.40 0.19 -3.70 16 13 C -0.12 -4.60 9.69 22.25 0.22 -4.38 16 14 C -0.07 -2.92 5.07 -19.84 -0.10 -3.02 16 15 C 0.06 2.95 5.10 29.10 0.15 3.10 16 16 C -0.53 -29.80 9.09 25.60 0.23 -29.57 16 17 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 18 C 0.00 0.24 5.46 84.65 0.46 0.70 16 19 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 20 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C -0.11 -4.08 9.69 22.25 0.22 -3.87 16 25 C -0.12 -3.49 9.96 22.40 0.22 -3.26 16 26 C 0.04 0.65 6.13 86.35 0.53 1.18 16 27 C 0.05 0.68 6.98 72.08 0.50 1.18 16 28 O -0.39 -6.08 10.38 -148.98 -1.55 -7.62 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.10 1.51 7.06 -2.39 -0.02 1.49 16 34 H 0.43 8.14 8.34 -92.71 -0.77 7.37 16 35 H 0.13 4.19 6.48 -2.91 -0.02 4.17 16 36 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.00 0.16 8.08 -2.39 -0.02 0.14 16 38 H 0.01 0.45 8.08 -2.39 -0.02 0.43 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.14 2.63 4.48 -35.58 -0.16 2.47 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -68.35 373.96 2.19 -66.16 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.10 Total: 18.42 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 5.50 Total: -11.05 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.80 Total: -84.83 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.64 Total: -34.71 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.35 2.19 -66.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339537289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.546 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds