Wall clock time and date at job start Tue Mar 31 2020 17:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46597 * 2 1 4 4 C 1.50703 * 109.47183 * 119.99736 * 2 1 3 5 5 H 1.07996 * 119.99590 * 120.00079 * 4 2 1 6 6 C 1.37878 * 120.00210 * 300.00836 * 4 2 1 7 7 N 1.31512 * 119.99691 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47636 * 89.99740 * 8 6 4 10 10 H 1.48507 * 109.46962 * 209.99793 * 8 6 4 11 11 H 1.48496 * 109.47138 * 329.99312 * 8 6 4 12 12 N 1.46492 * 109.47407 * 240.00252 * 2 1 3 13 13 C 1.46506 * 120.00224 * 299.99854 * 12 2 1 14 14 C 1.34779 * 120.00137 * 119.99814 * 12 2 1 15 15 O 1.21364 * 120.00057 * 354.39523 * 14 12 2 16 16 C 1.49332 * 119.99915 * 174.39512 * 14 12 2 17 17 O 1.21384 * 120.00432 * 0.67201 * 16 14 12 18 18 N 1.34780 * 120.00061 * 180.66863 * 16 14 12 19 19 C 1.39866 * 120.00435 * 185.64714 * 18 16 14 20 20 C 1.38936 * 120.19366 * 209.00873 * 19 18 16 21 21 C 1.37843 * 120.26524 * 179.82680 * 20 19 18 22 22 C 1.39314 * 120.33933 * 0.02562 * 21 20 19 23 23 C 1.38915 * 119.00777 * 0.37232 * 22 21 20 24 24 C 1.37666 * 120.85389 * 359.43317 * 23 22 21 25 25 C 1.51656 * 107.04769 * 179.02168 * 23 22 21 26 26 C 1.54699 * 101.95374 * 344.85043 * 25 23 22 27 27 H 1.09006 * 110.75075 * 266.93907 * 26 25 23 28 28 C 1.52997 * 110.91280 * 143.66240 * 26 25 23 29 29 O 1.36219 * 129.80416 * 180.94159 * 22 21 20 30 30 H 1.09003 * 109.47149 * 60.00190 * 1 2 3 31 31 H 1.09001 * 109.47092 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47312 * 299.99862 * 1 2 3 33 33 H 0.97003 * 119.99830 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47255 * 263.76190 * 13 12 2 35 35 H 1.09008 * 109.46733 * 23.76086 * 13 12 2 36 36 H 1.08992 * 109.47254 * 143.75841 * 13 12 2 37 37 H 0.97006 * 119.99872 * 5.64774 * 18 16 14 38 38 H 1.07992 * 119.87213 * 359.80353 * 20 19 18 39 39 H 1.07997 * 119.82723 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.04114 * 180.41236 * 24 23 22 41 41 H 1.09000 * 110.93699 * 103.01120 * 25 23 22 42 42 H 1.09008 * 110.93509 * 226.68745 * 25 23 22 43 43 H 1.09001 * 109.46757 * 305.09758 * 28 26 25 44 44 H 1.09007 * 109.47332 * 65.08727 * 28 26 25 45 45 H 1.08997 * 109.47886 * 185.09504 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5459 4.4125 10 1 1.3429 -0.9493 5.1120 11 1 2.4858 -2.5662 3.7119 12 7 2.0184 -0.6905 -1.1961 13 6 1.6646 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0028 1.1520 -1.9454 16 6 3.3939 -0.7708 -3.2359 17 8 3.1744 -1.9558 -3.3808 18 7 4.1797 -0.1186 -4.1155 19 6 4.6459 -0.7764 -5.2584 20 6 5.8560 -0.4071 -5.8325 21 6 6.3186 -1.0568 -6.9567 22 6 5.5775 -2.0888 -7.5281 23 6 4.3647 -2.4459 -6.9524 24 6 3.9006 -1.8025 -5.8273 25 6 3.7847 -3.5652 -7.7956 26 6 4.6393 -3.4731 -9.0818 27 1 4.1521 -2.8416 -9.8248 28 6 4.9161 -4.8647 -9.6543 29 8 5.8544 -2.8640 -8.6135 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7086 1.1612 3.4844 34 1 2.4694 -2.7349 -1.0699 35 1 0.7454 -2.3294 -0.8918 36 1 1.5154 -2.2586 -2.4950 37 1 4.4220 0.8071 -3.9560 38 1 6.4365 0.3923 -5.3964 39 1 7.2604 -0.7643 -7.3969 40 1 2.9590 -2.0953 -5.3867 41 1 3.9189 -4.5303 -7.3072 42 1 2.7322 -3.3835 -8.0135 43 1 5.3741 -5.4887 -8.8868 44 1 3.9790 -5.3171 -9.9789 45 1 5.5924 -4.7799 -10.5049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339799298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:40 Heat of formation + Delta-G solvation = -57.253205 kcal Electronic energy + Delta-G solvation = -28127.967754 eV Core-core repulsion = 24111.768724 eV Total energy + Delta-G solvation = -4016.199030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.45438 -40.56341 -38.64395 -37.34591 -35.79923 -34.34658 -33.39806 -32.79464 -31.24630 -29.67435 -29.25343 -26.95954 -26.29241 -25.32062 -24.66510 -22.75040 -21.95121 -21.78767 -20.68959 -19.29637 -17.88203 -17.58739 -17.18776 -16.71435 -16.34513 -16.02607 -15.71921 -15.38240 -15.01912 -14.50622 -14.39317 -14.11050 -13.70258 -13.60345 -13.38995 -13.25466 -13.16763 -12.80663 -12.66938 -12.63867 -12.38978 -12.32501 -11.86395 -11.67649 -11.60075 -11.32812 -11.11700 -11.06132 -10.88411 -10.80965 -10.69027 -10.27466 -10.23505 -9.92884 -9.27538 -9.08240 -8.82837 -8.49837 -7.86613 -7.73720 -6.14649 -4.23186 0.98125 1.16607 1.89363 2.64281 2.99567 3.24471 3.31056 3.33875 3.45567 3.72032 3.94553 4.18679 4.24724 4.35326 4.58285 4.71587 4.75638 4.83628 4.91017 5.05854 5.15922 5.17136 5.27568 5.37016 5.47867 5.58596 5.67391 5.74132 5.81455 5.96117 6.11569 6.14330 6.23891 6.26128 6.45998 6.56741 6.68185 6.71646 6.92688 7.01383 7.09942 7.25939 7.34311 7.62463 7.82400 7.96115 8.05154 8.31134 8.55196 8.82432 9.43309 10.90725 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023993 B = 0.002365 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.750999 B =11835.737179 C =12123.150595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.552 5.552 13 C 0.082 3.918 14 C 0.494 3.506 15 O -0.536 6.536 16 C 0.508 3.492 17 O -0.500 6.500 18 N -0.647 5.647 19 C 0.127 3.873 20 C -0.111 4.111 21 C -0.116 4.116 22 C 0.085 3.915 23 C -0.153 4.153 24 C -0.076 4.076 25 C -0.105 4.105 26 C 0.077 3.923 27 H 0.085 0.915 28 C -0.149 4.149 29 O -0.304 6.304 30 H 0.014 0.986 31 H 0.033 0.967 32 H 0.097 0.903 33 H 0.265 0.735 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.423 0.577 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -6.981 -22.173 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.282 5.282 13 C -0.061 4.061 14 C 0.274 3.726 15 O -0.415 6.415 16 C 0.291 3.709 17 O -0.374 6.374 18 N -0.294 5.294 19 C 0.032 3.968 20 C -0.132 4.132 21 C -0.135 4.135 22 C 0.039 3.961 23 C -0.155 4.155 24 C -0.096 4.096 25 C -0.142 4.142 26 C 0.021 3.979 27 H 0.103 0.897 28 C -0.207 4.207 29 O -0.218 6.218 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.739 -7.135 -22.069 23.893 hybrid contribution 0.332 -0.103 1.076 1.130 sum 6.071 -7.238 -20.993 23.021 Atomic orbital electron populations 1.22107 0.97562 0.99778 1.01156 1.19184 0.91436 0.94560 0.79296 0.91553 1.21281 1.32232 1.13233 0.89970 0.92023 1.24887 0.94821 0.94975 0.99012 1.69873 1.36090 1.22525 1.23965 0.86439 0.78642 0.79938 0.82076 1.20538 1.21037 1.19817 1.48272 1.45402 1.12692 1.21835 1.21967 1.01040 0.81404 1.01685 1.19584 0.82023 0.87270 0.83680 1.90722 1.61425 1.14486 1.74908 1.20939 0.79170 0.87232 0.83539 1.90684 1.57542 1.14883 1.74274 1.43221 1.49273 1.16685 1.20230 1.17541 0.93819 0.96871 0.88539 1.20599 0.94030 1.01801 0.96739 1.19959 1.01136 0.95000 0.97448 1.19501 0.95010 0.92692 0.88890 1.20572 0.97488 0.99481 0.97942 1.20357 1.00446 0.95345 0.93473 1.21868 1.00657 0.97891 0.93796 1.23362 0.83348 0.95323 0.95883 0.89687 1.21881 1.02969 0.93936 1.01868 1.86847 1.32423 1.59378 1.43198 0.96716 0.94755 0.88450 0.92541 0.92799 0.91040 0.90519 0.73879 0.84478 0.85007 0.83893 0.88870 0.89003 0.91387 0.90284 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.96 37.16 0.33 -3.12 16 2 C 0.25 6.39 2.62 -69.08 -0.18 6.20 16 3 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -14.11 8.37 -34.44 -0.29 -14.40 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.50 11.32 55.43 0.63 -23.88 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.55 -11.96 2.75 -175.82 -0.48 -12.44 16 13 C 0.08 1.53 8.47 59.85 0.51 2.03 16 14 C 0.49 10.14 7.72 -11.64 -0.09 10.05 16 15 O -0.54 -12.10 15.83 5.48 0.09 -12.01 16 16 C 0.51 8.68 7.54 -11.64 -0.09 8.59 16 17 O -0.50 -8.78 10.69 5.47 0.06 -8.73 16 18 N -0.65 -9.09 5.34 -10.25 -0.05 -9.15 16 19 C 0.13 1.66 6.36 -83.65 -0.53 1.12 16 20 C -0.11 -1.21 9.93 -39.47 -0.39 -1.60 16 21 C -0.12 -1.25 10.06 -39.33 -0.40 -1.64 16 22 C 0.08 1.00 7.03 -38.93 -0.27 0.73 16 23 C -0.15 -1.83 6.27 -104.11 -0.65 -2.48 16 24 C -0.08 -1.01 8.67 -39.51 -0.34 -1.36 16 25 C -0.11 -0.93 6.65 -26.52 -0.18 -1.11 16 26 C 0.08 0.62 4.25 -25.84 -0.11 0.51 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 C -0.15 -0.88 9.61 37.16 0.36 -0.52 16 29 O -0.30 -3.41 10.81 -20.44 -0.22 -3.64 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 32 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.05 1.01 8.13 -51.93 -0.42 0.58 16 35 H 0.07 1.30 6.44 -51.92 -0.33 0.97 16 36 H 0.08 1.30 5.84 -51.93 -0.30 1.00 16 37 H 0.42 5.29 8.29 -40.82 -0.34 4.95 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.14 2.03 6.12 -52.49 -0.32 1.71 16 41 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 42 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -30.73 368.70 -7.94 -38.67 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.07 Total: 5.12 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.42 Total: 4.68 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.09 Total: -45.47 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.08 Total: -24.38 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.73 -7.94 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339799298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.580 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds