Wall clock time and date at job start Tue Mar 31 2020 17:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.46977 * 2 1 4 4 C 1.50700 * 109.47158 * 120.00393 * 2 1 3 5 5 H 1.08004 * 119.99616 * 119.99846 * 4 2 1 6 6 C 1.37876 * 119.99921 * 300.00076 * 4 2 1 7 7 N 1.31510 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99720 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47102 * 89.99869 * 8 6 4 10 10 H 1.48504 * 109.46623 * 209.99678 * 8 6 4 11 11 H 1.48494 * 109.47282 * 329.99693 * 8 6 4 12 12 N 1.46506 * 109.47017 * 240.00105 * 2 1 3 13 13 C 1.46497 * 120.00104 * 300.00194 * 12 2 1 14 14 C 1.34775 * 119.99644 * 119.99562 * 12 2 1 15 15 O 1.21364 * 120.00178 * 356.74269 * 14 12 2 16 16 C 1.49333 * 119.99845 * 176.73768 * 14 12 2 17 17 O 1.21393 * 119.99976 * 6.12026 * 16 14 12 18 18 N 1.34781 * 120.00071 * 186.11535 * 16 14 12 19 19 C 1.39869 * 119.99842 * 174.44143 * 18 16 14 20 20 C 1.38932 * 120.19462 * 153.63983 * 19 18 16 21 21 C 1.37830 * 120.26952 * 180.10996 * 20 19 18 22 22 C 1.39321 * 120.34267 * 359.97438 * 21 20 19 23 23 C 1.38905 * 119.00048 * 359.73051 * 22 21 20 24 24 C 1.37665 * 120.86019 * 0.14801 * 23 22 21 25 25 C 1.51666 * 107.04757 * 180.56244 * 23 22 21 26 26 C 1.54703 * 101.93181 * 15.38317 * 25 23 22 27 27 H 1.08999 * 110.74751 * 93.19261 * 26 25 23 28 28 C 1.53004 * 110.74441 * 216.36055 * 26 25 23 29 29 O 1.36227 * 129.79584 * 179.07282 * 22 21 20 30 30 H 1.09003 * 109.46967 * 299.99236 * 1 2 3 31 31 H 1.08995 * 109.47231 * 60.00195 * 1 2 3 32 32 H 1.09006 * 109.46996 * 179.97438 * 1 2 3 33 33 H 0.97004 * 120.00311 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47496 * 95.86704 * 13 12 2 35 35 H 1.08998 * 109.47204 * 215.86407 * 13 12 2 36 36 H 1.08995 * 109.47215 * 335.86555 * 13 12 2 37 37 H 0.97001 * 119.99765 * 354.43832 * 18 16 14 38 38 H 1.08001 * 119.86530 * 0.08927 * 20 19 18 39 39 H 1.08011 * 119.83101 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.04280 * 179.97438 * 24 23 22 41 41 H 1.08998 * 110.93896 * 133.54066 * 25 23 22 42 42 H 1.08992 * 110.93755 * 257.22029 * 25 23 22 43 43 H 1.09002 * 109.47127 * 59.99511 * 28 26 25 44 44 H 1.08995 * 109.47050 * 180.02562 * 28 26 25 45 45 H 1.09003 * 109.46857 * 299.99901 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4117 10 1 1.3445 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0375 1.1422 -1.9221 16 6 3.3509 -0.7589 -3.2648 17 8 3.0181 -1.9049 -3.4873 18 7 4.2237 -0.1394 -4.0839 19 6 4.8349 -0.8510 -5.1214 20 6 5.2731 -0.1872 -6.2605 21 6 5.8735 -0.8872 -7.2848 22 6 6.0472 -2.2661 -7.1877 23 6 5.6117 -2.9207 -6.0426 24 6 5.0137 -2.2254 -5.0159 25 6 5.9438 -4.3903 -6.2171 26 6 6.9486 -4.3538 -7.3928 27 1 7.9731 -4.3058 -7.0238 28 6 6.7595 -5.5673 -8.3052 29 8 6.5927 -3.1411 -8.0780 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7089 1.1612 3.4844 34 1 0.7970 -2.1450 -2.0862 35 1 2.5049 -2.6078 -1.8937 36 1 1.4279 -2.5702 -0.4771 37 1 4.4279 0.7999 -3.9539 38 1 5.1424 0.8816 -6.3439 39 1 6.2111 -0.3641 -8.1674 40 1 4.6797 -2.7478 -4.1316 41 1 6.4104 -4.7936 -5.3183 42 1 5.0544 -4.9617 -6.4823 43 1 5.7465 -5.5649 -8.7078 44 1 7.4767 -5.5211 -9.1246 45 1 6.9207 -6.4809 -7.7328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339799300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:49 Heat of formation + Delta-G solvation = -55.352532 kcal Electronic energy + Delta-G solvation = -28157.636389 eV Core-core repulsion = 24141.519778 eV Total energy + Delta-G solvation = -4016.116610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45299 -40.58249 -38.64357 -37.35270 -35.79711 -34.35867 -33.38954 -32.79642 -31.23699 -29.67653 -29.25342 -26.95273 -26.26698 -25.32422 -24.66274 -22.76285 -21.94002 -21.78220 -20.70145 -19.32110 -17.88143 -17.59545 -17.18664 -16.74136 -16.28955 -16.00749 -15.77553 -15.36817 -15.01730 -14.51066 -14.38911 -14.13025 -13.70694 -13.61559 -13.38922 -13.21966 -13.16945 -12.80886 -12.68769 -12.52780 -12.40825 -12.32573 -11.86270 -11.69012 -11.63200 -11.32877 -11.14024 -11.03605 -10.91891 -10.81184 -10.59764 -10.31077 -10.24054 -9.93324 -9.27586 -9.07426 -8.79933 -8.49979 -7.85998 -7.72566 -6.15407 -4.24066 0.98378 1.17501 1.89238 2.63275 2.99850 3.23530 3.30236 3.32542 3.46380 3.72667 3.93135 4.19593 4.26021 4.34455 4.59767 4.72309 4.76241 4.83958 4.91165 5.06088 5.16401 5.16801 5.28014 5.38222 5.48599 5.59940 5.68279 5.74402 5.81800 6.02172 6.11916 6.15730 6.21051 6.26830 6.48648 6.61277 6.68298 6.72990 6.93431 7.02702 7.09965 7.24927 7.36363 7.61698 7.82008 7.95208 8.05322 8.30471 8.55162 8.81318 9.42258 10.90048 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.002477 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.755768 B =11299.772378 C =11977.221951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.550 5.550 13 C 0.069 3.931 14 C 0.493 3.507 15 O -0.537 6.537 16 C 0.508 3.492 17 O -0.500 6.500 18 N -0.646 5.646 19 C 0.127 3.873 20 C -0.113 4.113 21 C -0.116 4.116 22 C 0.084 3.916 23 C -0.153 4.153 24 C -0.079 4.079 25 C -0.105 4.105 26 C 0.077 3.923 27 H 0.086 0.914 28 C -0.149 4.149 29 O -0.304 6.304 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.423 0.577 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -8.602 -19.117 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.280 5.280 13 C -0.073 4.073 14 C 0.274 3.726 15 O -0.416 6.416 16 C 0.292 3.708 17 O -0.374 6.374 18 N -0.292 5.292 19 C 0.032 3.968 20 C -0.133 4.133 21 C -0.135 4.135 22 C 0.038 3.962 23 C -0.154 4.154 24 C -0.099 4.099 25 C -0.143 4.143 26 C 0.021 3.979 27 H 0.104 0.896 28 C -0.207 4.207 29 O -0.219 6.219 30 H 0.115 0.885 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.691 -8.671 -19.160 23.156 hybrid contribution 0.309 -0.083 1.066 1.113 sum 10.000 -8.754 -18.093 22.450 Atomic orbital electron populations 1.22089 0.97507 0.99826 1.01071 1.19185 0.91422 0.94584 0.79313 0.91557 1.21273 1.32283 1.13264 0.89991 0.91982 1.24887 0.94800 0.94966 0.99009 1.69873 1.36031 1.22491 1.23977 0.86441 0.78652 0.79903 0.82109 1.20539 1.21034 1.19815 1.48278 1.45132 1.12680 1.21921 1.22166 1.01342 0.81871 1.01968 1.19572 0.81956 0.87227 0.83861 1.90724 1.60165 1.15137 1.75562 1.20968 0.78834 0.86861 0.84151 1.90632 1.58000 1.17489 1.71301 1.43227 1.42060 1.15141 1.28774 1.17561 0.98563 0.91705 0.88965 1.20567 1.01046 1.00316 0.91399 1.19947 1.03689 0.89736 1.00149 1.19508 0.96196 0.91039 0.89440 1.20583 1.03354 0.95436 0.96042 1.20459 0.97691 0.92466 0.99301 1.21873 0.99938 0.93266 0.99175 1.23360 0.98588 0.84229 0.91747 0.89636 1.21885 1.03443 0.95504 0.99827 1.86840 1.76876 1.25128 1.33008 0.88495 0.96789 0.94814 0.92523 0.93412 0.89431 0.90410 0.73862 0.84505 0.85025 0.83526 0.88963 0.88877 0.91350 0.91394 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.25 6.38 2.63 -69.08 -0.18 6.20 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.02 7.95 -34.44 -0.27 -14.29 16 5 H 0.06 1.62 7.43 -52.48 -0.39 1.23 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.43 11.32 55.43 0.63 -23.81 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.55 -11.91 2.75 -175.82 -0.48 -12.40 16 13 C 0.07 1.29 8.47 59.85 0.51 1.80 16 14 C 0.49 10.12 7.73 -11.64 -0.09 10.03 16 15 O -0.54 -12.14 15.82 5.48 0.09 -12.05 16 16 C 0.51 8.64 7.56 -11.64 -0.09 8.56 16 17 O -0.50 -8.69 10.43 5.46 0.06 -8.63 16 18 N -0.65 -9.06 5.36 -10.25 -0.05 -9.11 16 19 C 0.13 1.66 6.41 -83.65 -0.54 1.12 16 20 C -0.11 -1.21 9.92 -39.47 -0.39 -1.60 16 21 C -0.12 -1.24 10.05 -39.33 -0.40 -1.63 16 22 C 0.08 1.00 7.04 -38.93 -0.27 0.72 16 23 C -0.15 -1.84 6.26 -104.11 -0.65 -2.49 16 24 C -0.08 -1.07 8.69 -39.51 -0.34 -1.41 16 25 C -0.11 -0.96 6.65 -26.51 -0.18 -1.13 16 26 C 0.08 0.64 4.26 -25.83 -0.11 0.53 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 C -0.15 -0.89 9.58 37.16 0.36 -0.54 16 29 O -0.30 -3.43 10.81 -20.46 -0.22 -3.65 16 30 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.54 5.37 -51.93 -0.28 1.26 16 36 H 0.08 1.48 7.11 -51.93 -0.37 1.11 16 37 H 0.42 5.28 8.27 -40.82 -0.34 4.94 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 40 H 0.15 2.14 5.94 -52.48 -0.31 1.83 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -30.50 368.95 -7.97 -38.47 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.11 Total: 5.61 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.41 Total: 4.39 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.09 Total: -45.31 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.08 Total: -24.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.50 -7.97 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339799300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.880 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds