Wall clock time and date at job start Tue Mar 31 2020 17:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.46977 * 2 1 4 4 C 1.50700 * 109.47158 * 120.00393 * 2 1 3 5 5 H 1.08004 * 119.99616 * 119.99846 * 4 2 1 6 6 C 1.37876 * 119.99921 * 300.00076 * 4 2 1 7 7 N 1.31510 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99720 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47102 * 89.99869 * 8 6 4 10 10 H 1.48504 * 109.46623 * 209.99678 * 8 6 4 11 11 H 1.48494 * 109.47282 * 329.99693 * 8 6 4 12 12 N 1.46506 * 109.47017 * 240.00105 * 2 1 3 13 13 C 1.46497 * 120.00104 * 300.00194 * 12 2 1 14 14 C 1.34775 * 119.99644 * 119.99562 * 12 2 1 15 15 O 1.21364 * 120.00178 * 356.74269 * 14 12 2 16 16 C 1.49333 * 119.99845 * 176.73768 * 14 12 2 17 17 O 1.21393 * 119.99976 * 6.12026 * 16 14 12 18 18 N 1.34781 * 120.00071 * 186.11535 * 16 14 12 19 19 C 1.39869 * 119.99842 * 174.44143 * 18 16 14 20 20 C 1.38932 * 120.19462 * 153.63983 * 19 18 16 21 21 C 1.37830 * 120.26952 * 180.10996 * 20 19 18 22 22 C 1.39321 * 120.34267 * 359.97438 * 21 20 19 23 23 C 1.38905 * 119.00048 * 359.73051 * 22 21 20 24 24 C 1.37665 * 120.86019 * 0.14801 * 23 22 21 25 25 C 1.51666 * 107.04757 * 180.56244 * 23 22 21 26 26 C 1.54703 * 101.93181 * 15.38317 * 25 23 22 27 27 H 1.08999 * 110.74751 * 93.19261 * 26 25 23 28 28 C 1.53004 * 110.74441 * 216.36055 * 26 25 23 29 29 O 1.36227 * 129.79584 * 179.07282 * 22 21 20 30 30 H 1.09003 * 109.46967 * 299.99236 * 1 2 3 31 31 H 1.08995 * 109.47231 * 60.00195 * 1 2 3 32 32 H 1.09006 * 109.46996 * 179.97438 * 1 2 3 33 33 H 0.97004 * 120.00311 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47496 * 95.86704 * 13 12 2 35 35 H 1.08998 * 109.47204 * 215.86407 * 13 12 2 36 36 H 1.08995 * 109.47215 * 335.86555 * 13 12 2 37 37 H 0.97001 * 119.99765 * 354.43832 * 18 16 14 38 38 H 1.08001 * 119.86530 * 0.08927 * 20 19 18 39 39 H 1.08011 * 119.83101 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.04280 * 179.97438 * 24 23 22 41 41 H 1.08998 * 110.93896 * 133.54066 * 25 23 22 42 42 H 1.08992 * 110.93755 * 257.22029 * 25 23 22 43 43 H 1.09002 * 109.47127 * 59.99511 * 28 26 25 44 44 H 1.08995 * 109.47050 * 180.02562 * 28 26 25 45 45 H 1.09003 * 109.46857 * 299.99901 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4117 10 1 1.3445 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0375 1.1422 -1.9221 16 6 3.3509 -0.7589 -3.2648 17 8 3.0181 -1.9049 -3.4873 18 7 4.2237 -0.1394 -4.0839 19 6 4.8349 -0.8510 -5.1214 20 6 5.2731 -0.1872 -6.2605 21 6 5.8735 -0.8872 -7.2848 22 6 6.0472 -2.2661 -7.1877 23 6 5.6117 -2.9207 -6.0426 24 6 5.0137 -2.2254 -5.0159 25 6 5.9438 -4.3903 -6.2171 26 6 6.9486 -4.3538 -7.3928 27 1 7.9731 -4.3058 -7.0238 28 6 6.7595 -5.5673 -8.3052 29 8 6.5927 -3.1411 -8.0780 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7089 1.1612 3.4844 34 1 0.7970 -2.1450 -2.0862 35 1 2.5049 -2.6078 -1.8937 36 1 1.4279 -2.5702 -0.4771 37 1 4.4279 0.7999 -3.9539 38 1 5.1424 0.8816 -6.3439 39 1 6.2111 -0.3641 -8.1674 40 1 4.6797 -2.7478 -4.1316 41 1 6.4104 -4.7936 -5.3183 42 1 5.0544 -4.9617 -6.4823 43 1 5.7465 -5.5649 -8.7078 44 1 7.4767 -5.5211 -9.1246 45 1 6.9207 -6.4809 -7.7328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339799300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:44 Heat of formation + Delta-G solvation = -73.823762 kcal Electronic energy + Delta-G solvation = -28158.437362 eV Core-core repulsion = 24141.519778 eV Total energy + Delta-G solvation = -4016.917583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -42.43667 -41.80498 -40.06539 -38.49458 -37.48552 -35.60811 -34.67589 -34.12343 -31.97620 -31.49910 -30.33342 -27.94277 -27.58250 -27.34302 -26.08317 -23.85583 -22.84198 -22.62285 -22.11721 -20.83606 -19.04743 -18.70819 -18.46165 -18.24761 -17.59558 -17.56707 -17.02790 -16.77366 -16.34864 -15.98453 -15.45537 -15.29185 -15.05070 -14.62416 -14.45006 -14.41483 -14.12142 -14.02387 -13.92139 -13.66611 -13.53568 -13.48793 -13.18392 -13.00517 -12.96807 -12.77900 -12.74012 -12.48344 -12.23848 -12.20538 -12.09563 -12.03528 -11.80073 -11.24987 -10.91220 -10.58644 -10.33734 -9.89954 -9.54626 -8.74821 -8.18099 -6.34577 -0.09830 0.26737 0.59353 1.27263 1.42699 1.44055 1.54077 2.07211 2.24654 2.38055 2.59016 2.68269 3.10616 3.21403 3.46068 3.58268 3.87488 4.02593 4.11888 4.19640 4.25913 4.43966 4.53930 4.58040 4.66139 4.70371 4.70788 4.74600 4.86110 4.91942 4.94957 4.98200 5.03541 5.05751 5.19926 5.24405 5.29649 5.36733 5.39013 5.39358 5.60157 5.61415 5.87491 6.02359 6.08322 6.18096 6.46721 6.63761 6.73765 6.96391 7.36119 8.86727 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.002477 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.755768 B =11299.772378 C =11977.221951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.258 3.742 3 H 0.024 0.976 4 C -0.543 4.543 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.280 1.280 10 H -0.279 1.279 11 H -0.264 1.264 12 N -0.561 5.561 13 C 0.075 3.925 14 C 0.488 3.512 15 O -0.564 6.564 16 C 0.517 3.483 17 O -0.505 6.505 18 N -0.630 5.630 19 C 0.103 3.897 20 C -0.101 4.101 21 C -0.117 4.117 22 C 0.077 3.923 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.106 4.106 26 C 0.073 3.927 27 H 0.098 0.902 28 C -0.146 4.146 29 O -0.316 6.316 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.045 0.955 33 H 0.267 0.733 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.430 0.570 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 -10.056 -20.521 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.157 3.843 3 H 0.042 0.958 4 C -0.581 4.581 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.790 3.210 9 H -0.206 1.206 10 H -0.205 1.205 11 H -0.188 1.188 12 N -0.291 5.291 13 C -0.067 4.067 14 C 0.270 3.730 15 O -0.445 6.445 16 C 0.300 3.700 17 O -0.381 6.381 18 N -0.276 5.276 19 C 0.009 3.991 20 C -0.121 4.121 21 C -0.136 4.136 22 C 0.031 3.969 23 C -0.167 4.167 24 C -0.114 4.114 25 C -0.143 4.143 26 C 0.017 3.983 27 H 0.116 0.884 28 C -0.203 4.203 29 O -0.231 6.231 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.182 0.818 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.896 -10.144 -20.608 25.423 hybrid contribution 0.020 0.380 1.377 1.428 sum 10.916 -9.764 -19.231 24.173 Atomic orbital electron populations 1.21897 0.96570 1.00339 1.00418 1.18830 0.92114 0.92687 0.80620 0.95808 1.21500 1.32441 1.13329 0.90861 0.92061 1.25689 0.94905 0.95608 1.01862 1.69997 1.36844 1.23630 1.24678 0.85442 0.77906 0.79126 0.78488 1.20582 1.20455 1.18825 1.48242 1.45664 1.13774 1.21377 1.22247 1.02360 0.80097 1.01978 1.20170 0.81219 0.87055 0.84596 1.90696 1.60892 1.16485 1.76461 1.20130 0.79670 0.86546 0.83703 1.90627 1.58608 1.17401 1.71421 1.43028 1.40922 1.15359 1.28277 1.17747 1.00010 0.91814 0.89513 1.20844 0.99451 1.01624 0.90173 1.20297 1.02909 0.89552 1.00823 1.19808 0.95916 0.91743 0.89385 1.20854 1.03022 0.97092 0.95699 1.20419 0.98769 0.92871 0.99376 1.21979 1.00491 0.91639 1.00149 1.23631 0.98907 0.83943 0.91774 0.88434 1.21908 1.03244 0.95222 0.99880 1.86832 1.76732 1.25989 1.33546 0.90689 0.95818 0.93573 0.92401 0.92018 0.88318 0.90988 0.73059 0.81776 0.82554 0.85111 0.87713 0.88469 0.91985 0.90775 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.97 71.98 0.65 -5.77 16 2 C 0.26 13.30 2.63 44.24 0.12 13.41 16 3 H 0.02 1.42 6.90 -2.39 -0.02 1.41 16 4 C -0.54 -29.12 7.95 25.60 0.20 -28.92 16 5 H 0.06 3.22 7.43 -2.91 -0.02 3.20 16 6 C 0.02 1.06 5.30 84.66 0.45 1.50 16 7 N -0.91 -51.25 11.32 21.45 0.24 -51.01 16 8 Si 0.97 42.30 29.54 68.60 2.03 44.32 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 12 N -0.56 -24.61 2.75 -828.53 -2.28 -26.89 16 13 C 0.07 2.75 8.47 127.77 1.08 3.83 16 14 C 0.49 20.33 7.73 87.23 0.67 21.00 16 15 O -0.56 -26.27 15.82 -3.29 -0.05 -26.32 16 16 C 0.52 17.51 7.56 87.23 0.66 18.17 16 17 O -0.50 -17.34 10.43 -3.38 -0.04 -17.38 16 18 N -0.63 -17.28 5.36 -304.67 -1.63 -18.91 16 19 C 0.10 2.58 6.41 38.21 0.24 2.82 16 20 C -0.10 -1.95 9.92 22.34 0.22 -1.73 16 21 C -0.12 -2.22 10.05 22.43 0.23 -1.99 16 22 C 0.08 1.70 7.04 22.69 0.16 1.86 16 23 C -0.17 -3.80 6.26 -19.53 -0.12 -3.92 16 24 C -0.09 -2.49 8.69 22.32 0.19 -2.30 16 25 C -0.11 -1.75 6.65 30.74 0.20 -1.55 16 26 C 0.07 1.06 4.26 31.18 0.13 1.19 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 C -0.15 -1.40 9.58 71.98 0.69 -0.71 16 29 O -0.32 -6.55 10.81 -96.14 -1.04 -7.59 16 30 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 31 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 2.04 7.67 -2.38 -0.02 2.02 16 33 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.10 3.41 5.37 -2.43 -0.01 3.40 16 36 H 0.07 2.70 7.11 -2.39 -0.02 2.68 16 37 H 0.43 10.46 8.27 -92.71 -0.77 9.69 16 38 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.13 3.84 5.94 -2.91 -0.02 3.82 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.10 1.51 7.92 -2.39 -0.02 1.49 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -66.42 368.95 3.27 -63.15 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.26 Total: 23.70 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 5.78 Total: 16.92 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -3.67 Total: -96.80 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.13 Total: -51.28 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -66.42 3.27 -63.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339799300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.678 kcal (2) G-P(sol) polarization free energy of solvation -66.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds