Wall clock time and date at job start Tue Mar 31 2020 17:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.55791 * 2 1 4 4 C 1.54997 * 110.61950 * 237.12108 * 2 1 3 5 5 C 1.54805 * 102.09376 * 204.31931 * 4 2 1 6 6 H 1.09001 * 110.59915 * 139.61434 * 5 4 2 7 7 N 1.46496 * 110.48947 * 262.20187 * 5 4 2 8 8 C 1.34783 * 120.00481 * 201.22329 * 7 5 4 9 9 O 1.21345 * 119.99461 * 0.02562 * 8 7 5 10 10 C 1.49445 * 120.00215 * 180.02562 * 8 7 5 11 11 O 1.21351 * 119.99977 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99933 * 180.02562 * 10 8 7 13 13 C 1.46505 * 120.00085 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.47284 * 179.97438 * 13 12 10 15 15 C 1.38631 * 119.75257 * 269.72805 * 14 13 12 16 16 C 1.37614 * 120.24789 * 179.71693 * 15 14 13 17 17 C 1.40723 * 119.74466 * 0.57566 * 16 15 14 18 18 C 1.41394 * 120.24247 * 179.67866 * 17 16 15 19 19 H 1.07998 * 120.00092 * 24.39318 * 18 17 16 20 20 C 1.39946 * 119.99696 * 204.39382 * 18 17 16 21 21 N 1.30822 * 120.00206 * 17.86279 * 20 18 17 22 22 Si 1.86801 * 119.99833 * 197.85768 * 20 18 17 23 23 H 1.48502 * 109.47232 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46803 * 120.00266 * 22 20 18 25 25 H 1.48498 * 109.47119 * 239.99828 * 22 20 18 26 26 C 1.40717 * 119.50843 * 359.69800 * 17 16 15 27 27 C 1.37620 * 119.74571 * 0.02562 * 26 17 16 28 28 C 1.54094 * 104.19123 * 20.87947 * 5 4 2 29 29 O 1.43744 * 107.29255 * 2.03209 * 28 5 4 30 30 H 1.08997 * 109.47397 * 182.88065 * 1 2 3 31 31 H 1.09001 * 109.47169 * 302.87984 * 1 2 3 32 32 H 1.09004 * 109.47145 * 62.87450 * 1 2 3 33 33 H 1.09009 * 110.90559 * 86.11890 * 4 2 1 34 34 H 1.09003 * 110.90757 * 322.51994 * 4 2 1 35 35 H 0.97005 * 120.00068 * 21.22415 * 7 5 4 36 36 H 0.96998 * 120.00081 * 359.97438 * 12 10 8 37 37 H 1.08994 * 109.47078 * 299.99738 * 13 12 10 38 38 H 1.09001 * 109.46739 * 59.99543 * 13 12 10 39 39 H 1.08006 * 119.87176 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.12501 * 180.27360 * 16 15 14 41 41 H 0.96993 * 120.00440 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12229 * 180.02562 * 26 17 16 43 43 H 1.07993 * 119.87165 * 179.97438 * 27 26 17 44 44 H 1.08999 * 109.88065 * 121.44872 * 28 5 4 45 45 H 1.08997 * 109.87989 * 242.60448 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4810 -1.2121 -0.7269 6 1 3.7031 -2.2335 -1.0362 7 7 4.5014 -0.2911 -1.2334 8 6 5.7893 -0.6828 -1.3008 9 8 6.1034 -1.7987 -0.9423 10 6 6.8302 0.2571 -1.8170 11 8 6.5158 1.3728 -2.1760 12 7 8.1179 -0.1349 -1.8848 13 6 9.1384 0.7866 -2.3904 14 6 10.4846 0.1097 -2.3626 15 6 11.2846 0.2153 -1.2354 16 6 12.5132 -0.4036 -1.1968 17 6 12.9615 -1.1355 -2.3119 18 6 14.2249 -1.7699 -2.2862 19 1 14.6738 -2.0413 -1.3422 20 6 14.8937 -2.0460 -3.4842 21 7 14.5467 -1.4289 -4.5843 22 14 16.2818 -3.2957 -3.5122 23 1 16.4774 -3.8491 -2.1481 24 1 15.9379 -4.3965 -4.4479 25 1 17.5331 -2.6355 -3.9633 26 6 12.1434 -1.2311 -3.4528 27 6 10.9160 -0.6088 -3.4669 28 6 3.3875 -1.1219 0.8086 29 8 2.0416 -0.7349 1.1326 30 1 -0.3634 -1.0263 0.0516 31 1 -0.3633 0.5579 0.8630 32 1 -0.3634 0.4686 -0.9147 33 1 2.1482 -0.1451 -2.0960 34 1 1.4565 -1.6600 -1.4267 35 1 4.2502 0.6009 -1.5204 36 1 8.3691 -1.0269 -1.5982 37 1 8.8957 1.0715 -3.4140 38 1 9.1669 1.6772 -1.7624 39 1 10.9406 0.7819 -0.3827 40 1 13.1329 -0.3237 -0.3159 41 1 15.0104 -1.6200 -5.4145 42 1 12.4775 -1.7906 -4.3140 43 1 10.2867 -0.6804 -4.3416 44 1 3.6106 -2.0926 1.2512 45 1 4.0878 -0.3734 1.1792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349274091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:15 Heat of formation + Delta-G solvation = -105.393668 kcal Electronic energy + Delta-G solvation = -26985.606501 eV Core-core repulsion = 22967.319944 eV Total energy + Delta-G solvation = -4018.286557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.91547 -39.77099 -38.39335 -37.66096 -35.39473 -34.62248 -33.47246 -32.52937 -30.57632 -30.41362 -29.40431 -27.35390 -26.50983 -24.98975 -23.34133 -21.93193 -21.40417 -21.12540 -20.44210 -20.21425 -18.57292 -17.43803 -17.42430 -16.54499 -16.06717 -16.01573 -15.52405 -15.48248 -15.26435 -15.11399 -14.39782 -14.23584 -13.90883 -13.57993 -13.47343 -13.39947 -13.06119 -12.72727 -12.60673 -12.42865 -12.12557 -12.07914 -12.04352 -11.78972 -11.63910 -11.60056 -11.24754 -11.21773 -11.14003 -10.66105 -10.57775 -10.10256 -9.79100 -9.62449 -9.55653 -9.51928 -9.26083 -8.91714 -7.61210 -7.50016 -6.90476 -4.49909 1.41626 2.19720 2.64549 2.95461 3.00778 3.04485 3.07344 3.21916 3.41550 3.75450 3.83433 3.98062 4.23046 4.43737 4.47330 4.64047 4.67094 4.76101 4.90726 5.12542 5.18690 5.30221 5.43667 5.48127 5.55093 5.56858 5.67678 5.70022 5.77955 5.93832 6.12708 6.19600 6.28942 6.47624 6.50073 6.83139 6.87026 6.94363 7.13798 7.22314 7.43213 7.47511 7.67382 7.78685 7.92470 7.96212 8.09602 8.16109 8.50463 8.75296 8.82806 10.03481 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029993 B = 0.001823 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.330588 B =15352.893558 C =15598.562102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.158 4.158 5 C 0.109 3.891 6 H 0.109 0.891 7 N -0.700 5.700 8 C 0.509 3.491 9 O -0.514 6.514 10 C 0.498 3.502 11 O -0.535 6.535 12 N -0.681 5.681 13 C 0.182 3.818 14 C -0.252 4.252 15 C -0.067 4.067 16 C -0.229 4.229 17 C 0.117 3.883 18 C -0.456 4.456 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.785 5.785 22 Si 0.909 3.091 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.170 4.170 27 C -0.079 4.079 28 C 0.038 3.962 29 O -0.372 6.372 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.413 0.587 36 H 0.413 0.587 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.282 0.718 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.381 1.225 3.973 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.196 4.196 5 C 0.004 3.996 6 H 0.127 0.873 7 N -0.355 5.355 8 C 0.290 3.710 9 O -0.388 6.388 10 C 0.277 3.723 11 O -0.413 6.413 12 N -0.332 5.332 13 C 0.061 3.939 14 C -0.254 4.254 15 C -0.086 4.086 16 C -0.249 4.249 17 C 0.114 3.886 18 C -0.485 4.485 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.410 5.410 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.189 4.189 27 C -0.098 4.098 28 C -0.041 4.041 29 O -0.291 6.291 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.250 0.750 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.385 1.195 3.913 21.773 hybrid contribution 0.915 -0.431 -0.336 1.066 sum -20.470 0.764 3.576 20.794 Atomic orbital electron populations 1.21770 0.92752 1.03167 1.02656 1.23190 0.95572 0.95447 0.84733 0.90970 1.23508 0.94683 1.02110 0.99277 1.22403 0.87449 0.95641 0.94067 0.87280 1.45849 1.06344 1.18425 1.64906 1.20511 0.83849 0.87726 0.78948 1.90780 1.81029 1.20494 1.46521 1.20009 0.84266 0.87364 0.80631 1.90734 1.81311 1.20596 1.48668 1.46508 1.05824 1.19271 1.61604 1.20134 0.84543 0.90729 0.98476 1.18901 0.96277 1.12603 0.97594 1.20406 0.94449 0.98168 0.95547 1.20964 0.97797 1.05726 1.00389 1.17700 0.92172 0.87846 0.90833 1.19714 1.01973 1.33252 0.93519 0.90135 1.25971 0.98396 0.95017 0.94988 1.69823 1.37245 1.33132 1.00785 0.86241 0.80089 0.80581 0.79760 1.18264 1.19571 1.19866 1.21313 0.93287 1.03929 1.00375 1.20552 0.96176 0.97284 0.95753 1.23662 0.84604 1.01709 0.94075 1.88924 1.27531 1.73634 1.38976 0.91586 0.91695 0.90918 0.89040 0.88598 0.75023 0.75040 0.91619 0.91700 0.89297 0.88793 0.90663 0.86317 0.89324 0.88604 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.66 37.15 0.36 -0.42 16 2 C 0.07 0.47 3.97 -25.68 -0.10 0.37 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.16 -0.95 6.22 -24.73 -0.15 -1.11 16 5 C 0.11 0.93 3.35 -66.41 -0.22 0.71 16 6 H 0.11 0.99 7.66 -51.93 -0.40 0.60 16 7 N -0.70 -6.93 5.01 -52.76 -0.26 -7.20 16 8 C 0.51 6.73 7.88 -11.58 -0.09 6.64 16 9 O -0.51 -7.89 16.19 5.50 0.09 -7.80 16 10 C 0.50 7.48 7.89 -11.59 -0.09 7.39 16 11 O -0.53 -8.81 16.48 5.50 0.09 -8.72 16 12 N -0.68 -10.80 5.54 -61.91 -0.34 -11.14 16 13 C 0.18 3.14 5.79 -5.19 -0.03 3.11 16 14 C -0.25 -5.11 5.27 -104.33 -0.55 -5.66 16 15 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 16 C -0.23 -5.36 9.80 -38.87 -0.38 -5.74 16 17 C 0.12 3.00 5.58 -106.82 -0.60 2.40 16 18 C -0.46 -11.62 9.05 -37.74 -0.34 -11.96 16 19 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 20 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 21 N -0.79 -19.52 10.95 55.55 0.61 -18.92 16 22 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 26 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 27 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 28 C 0.04 0.35 7.50 37.73 0.28 0.63 16 29 O -0.37 -3.61 11.23 -35.23 -0.40 -4.01 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.45 7.96 -51.92 -0.41 0.04 16 34 H 0.10 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.41 3.59 8.00 -40.82 -0.33 3.26 16 36 H 0.41 6.59 7.94 -40.82 -0.32 6.26 16 37 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 42 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -28.33 382.38 -8.98 -37.31 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.39 Total: 12.16 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.11 Total: -10.37 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.00 Total: -37.26 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.22 Total: -20.53 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.33 -8.98 -37.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349274091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.081 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds