Wall clock time and date at job start Tue Mar 31 2020 17:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.55791 * 2 1 4 4 C 1.54997 * 110.61950 * 237.12108 * 2 1 3 5 5 C 1.54805 * 102.09376 * 204.31931 * 4 2 1 6 6 H 1.09001 * 110.59915 * 139.61434 * 5 4 2 7 7 N 1.46496 * 110.48947 * 262.20187 * 5 4 2 8 8 C 1.34783 * 120.00481 * 201.22329 * 7 5 4 9 9 O 1.21345 * 119.99461 * 0.02562 * 8 7 5 10 10 C 1.49445 * 120.00215 * 180.02562 * 8 7 5 11 11 O 1.21351 * 119.99977 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99933 * 180.02562 * 10 8 7 13 13 C 1.46505 * 120.00085 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.47284 * 179.97438 * 13 12 10 15 15 C 1.38631 * 119.75257 * 269.72805 * 14 13 12 16 16 C 1.37614 * 120.24789 * 179.71693 * 15 14 13 17 17 C 1.40723 * 119.74466 * 0.57566 * 16 15 14 18 18 C 1.41394 * 120.24247 * 179.67866 * 17 16 15 19 19 H 1.07998 * 120.00092 * 24.39318 * 18 17 16 20 20 C 1.39946 * 119.99696 * 204.39382 * 18 17 16 21 21 N 1.30822 * 120.00206 * 17.86279 * 20 18 17 22 22 Si 1.86801 * 119.99833 * 197.85768 * 20 18 17 23 23 H 1.48502 * 109.47232 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46803 * 120.00266 * 22 20 18 25 25 H 1.48498 * 109.47119 * 239.99828 * 22 20 18 26 26 C 1.40717 * 119.50843 * 359.69800 * 17 16 15 27 27 C 1.37620 * 119.74571 * 0.02562 * 26 17 16 28 28 C 1.54094 * 104.19123 * 20.87947 * 5 4 2 29 29 O 1.43744 * 107.29255 * 2.03209 * 28 5 4 30 30 H 1.08997 * 109.47397 * 182.88065 * 1 2 3 31 31 H 1.09001 * 109.47169 * 302.87984 * 1 2 3 32 32 H 1.09004 * 109.47145 * 62.87450 * 1 2 3 33 33 H 1.09009 * 110.90559 * 86.11890 * 4 2 1 34 34 H 1.09003 * 110.90757 * 322.51994 * 4 2 1 35 35 H 0.97005 * 120.00068 * 21.22415 * 7 5 4 36 36 H 0.96998 * 120.00081 * 359.97438 * 12 10 8 37 37 H 1.08994 * 109.47078 * 299.99738 * 13 12 10 38 38 H 1.09001 * 109.46739 * 59.99543 * 13 12 10 39 39 H 1.08006 * 119.87176 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.12501 * 180.27360 * 16 15 14 41 41 H 0.96993 * 120.00440 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.12229 * 180.02562 * 26 17 16 43 43 H 1.07993 * 119.87165 * 179.97438 * 27 26 17 44 44 H 1.08999 * 109.88065 * 121.44872 * 28 5 4 45 45 H 1.08997 * 109.87989 * 242.60448 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4810 -1.2121 -0.7269 6 1 3.7031 -2.2335 -1.0362 7 7 4.5014 -0.2911 -1.2334 8 6 5.7893 -0.6828 -1.3008 9 8 6.1034 -1.7987 -0.9423 10 6 6.8302 0.2571 -1.8170 11 8 6.5158 1.3728 -2.1760 12 7 8.1179 -0.1349 -1.8848 13 6 9.1384 0.7866 -2.3904 14 6 10.4846 0.1097 -2.3626 15 6 11.2846 0.2153 -1.2354 16 6 12.5132 -0.4036 -1.1968 17 6 12.9615 -1.1355 -2.3119 18 6 14.2249 -1.7699 -2.2862 19 1 14.6738 -2.0413 -1.3422 20 6 14.8937 -2.0460 -3.4842 21 7 14.5467 -1.4289 -4.5843 22 14 16.2818 -3.2957 -3.5122 23 1 16.4774 -3.8491 -2.1481 24 1 15.9379 -4.3965 -4.4479 25 1 17.5331 -2.6355 -3.9633 26 6 12.1434 -1.2311 -3.4528 27 6 10.9160 -0.6088 -3.4669 28 6 3.3875 -1.1219 0.8086 29 8 2.0416 -0.7349 1.1326 30 1 -0.3634 -1.0263 0.0516 31 1 -0.3633 0.5579 0.8630 32 1 -0.3634 0.4686 -0.9147 33 1 2.1482 -0.1451 -2.0960 34 1 1.4565 -1.6600 -1.4267 35 1 4.2502 0.6009 -1.5204 36 1 8.3691 -1.0269 -1.5982 37 1 8.8957 1.0715 -3.4140 38 1 9.1669 1.6772 -1.7624 39 1 10.9406 0.7819 -0.3827 40 1 13.1329 -0.3237 -0.3159 41 1 15.0104 -1.6200 -5.4145 42 1 12.4775 -1.7906 -4.3140 43 1 10.2867 -0.6804 -4.3416 44 1 3.6106 -2.0926 1.2512 45 1 4.0878 -0.3734 1.1792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349274091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:11 Heat of formation + Delta-G solvation = -123.944015 kcal Electronic energy + Delta-G solvation = -26986.410904 eV Core-core repulsion = 22967.319944 eV Total energy + Delta-G solvation = -4019.090960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -41.91565 -40.67067 -39.67692 -39.19112 -36.63564 -35.85510 -35.04082 -33.07550 -32.16298 -31.26959 -31.18462 -28.92441 -27.07990 -26.39054 -24.72733 -22.92615 -22.60402 -22.09410 -21.87759 -21.53018 -19.74005 -19.25802 -18.31237 -17.46659 -17.26669 -17.07042 -16.82329 -16.49270 -16.30618 -16.02571 -15.81468 -15.65894 -15.46276 -14.95096 -14.82222 -14.27453 -14.02876 -13.84726 -13.67373 -13.55428 -13.34691 -13.26455 -13.03784 -12.98427 -12.84261 -12.75765 -12.64189 -12.41702 -12.23844 -12.16626 -11.78141 -11.51201 -11.31594 -11.06994 -10.81473 -10.73310 -10.44347 -10.23151 -9.41405 -9.30931 -8.68883 -6.38727 0.28720 0.75499 1.12482 1.29762 1.38471 1.52056 1.54079 2.08494 2.18942 2.53216 2.76736 2.88232 3.34043 3.44679 3.67565 3.72735 3.84563 4.08338 4.10652 4.16128 4.28076 4.41062 4.49769 4.61778 4.63120 4.65100 4.70901 4.72523 4.85535 4.92350 5.03152 5.08596 5.13167 5.14673 5.18612 5.30796 5.33815 5.41558 5.66890 5.82878 5.86023 5.93264 6.07313 6.16901 6.33540 6.34841 6.65849 6.67730 6.89635 6.90058 6.98768 8.27916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029993 B = 0.001823 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.330588 B =15352.893558 C =15598.562102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.076 0.924 4 C -0.147 4.147 5 C 0.107 3.893 6 H 0.105 0.895 7 N -0.681 5.681 8 C 0.514 3.486 9 O -0.538 6.538 10 C 0.502 3.498 11 O -0.547 6.547 12 N -0.683 5.683 13 C 0.191 3.809 14 C -0.234 4.234 15 C -0.067 4.067 16 C -0.244 4.244 17 C 0.085 3.915 18 C -0.495 4.495 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.819 5.819 22 Si 0.981 3.019 23 H -0.258 1.258 24 H -0.264 1.264 25 H -0.265 1.265 26 C -0.193 4.193 27 C -0.081 4.081 28 C 0.038 3.962 29 O -0.390 6.390 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.290 0.710 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.307 1.616 3.865 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.003 3.997 3 H 0.094 0.906 4 C -0.184 4.184 5 C 0.003 3.997 6 H 0.123 0.877 7 N -0.336 5.336 8 C 0.294 3.706 9 O -0.415 6.415 10 C 0.283 3.717 11 O -0.425 6.425 12 N -0.334 5.334 13 C 0.069 3.931 14 C -0.236 4.236 15 C -0.085 4.085 16 C -0.264 4.264 17 C 0.083 3.917 18 C -0.524 4.524 19 H 0.095 0.905 20 C -0.180 4.180 21 N -0.445 5.445 22 Si 0.802 3.198 23 H -0.182 1.182 24 H -0.189 1.189 25 H -0.190 1.190 26 C -0.213 4.213 27 C -0.100 4.100 28 C -0.040 4.040 29 O -0.310 6.310 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.259 0.741 36 H 0.250 0.750 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.360 1.616 3.810 23.724 hybrid contribution 1.293 -0.425 -0.252 1.384 sum -22.067 1.191 3.557 22.384 Atomic orbital electron populations 1.21788 0.91497 1.03293 1.03529 1.23422 0.96617 0.95443 0.84209 0.90635 1.23513 0.92753 1.02810 0.99365 1.22526 0.88262 0.95176 0.93732 0.87667 1.45808 1.05434 1.18952 1.63400 1.20140 0.84433 0.86974 0.79026 1.90783 1.81448 1.21257 1.47984 1.20218 0.84160 0.87375 0.79973 1.90732 1.81482 1.21208 1.49122 1.46291 1.06086 1.19062 1.61962 1.19975 0.83094 0.90753 0.99248 1.19184 0.97393 1.10590 0.96397 1.20717 0.93550 0.97557 0.96708 1.21162 0.99028 1.06074 1.00135 1.18045 0.92824 0.88930 0.91932 1.19931 1.02861 1.35446 0.94178 0.90517 1.26770 1.00688 0.96313 0.94200 1.69865 1.38757 1.34356 1.01475 0.85167 0.76984 0.77962 0.79680 1.18182 1.18876 1.18993 1.21275 0.94652 1.05365 0.99998 1.20785 0.95411 0.96725 0.97038 1.23597 0.84534 1.01339 0.94499 1.88916 1.27511 1.74089 1.40476 0.91694 0.92114 0.88925 0.87318 0.87281 0.74053 0.74985 0.91095 0.90681 0.86394 0.88359 0.89957 0.88093 0.87469 0.88728 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.66 71.98 0.70 -0.51 16 2 C 0.06 0.70 3.97 31.28 0.12 0.83 16 3 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.15 -1.37 6.22 31.89 0.20 -1.17 16 5 C 0.11 1.63 3.35 45.98 0.15 1.78 16 6 H 0.11 1.75 7.66 -2.39 -0.02 1.73 16 7 N -0.68 -12.12 5.01 -439.21 -2.20 -14.31 16 8 C 0.51 12.75 7.88 87.27 0.69 13.43 16 9 O -0.54 -15.91 16.19 -3.23 -0.05 -15.96 16 10 C 0.50 14.09 7.89 87.27 0.69 14.78 16 11 O -0.55 -16.72 16.48 -3.25 -0.05 -16.78 16 12 N -0.68 -20.36 5.54 -468.14 -2.59 -22.96 16 13 C 0.19 6.14 5.79 85.63 0.50 6.64 16 14 C -0.23 -9.18 5.27 -19.68 -0.10 -9.28 16 15 C -0.07 -2.73 9.67 22.22 0.21 -2.52 16 16 C -0.24 -11.57 9.80 22.73 0.22 -11.34 16 17 C 0.09 4.49 5.58 -21.29 -0.12 4.37 16 18 C -0.50 -26.21 9.05 23.46 0.21 -26.00 16 19 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 20 C 0.04 1.78 5.14 85.26 0.44 2.22 16 21 N -0.82 -41.93 10.95 21.83 0.24 -41.70 16 22 Si 0.98 37.42 29.60 68.60 2.03 39.45 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 26 C -0.19 -9.85 8.70 22.73 0.20 -9.65 16 27 C -0.08 -3.53 9.67 22.22 0.21 -3.31 16 28 C 0.04 0.67 7.50 72.35 0.54 1.21 16 29 O -0.39 -7.10 11.23 -148.98 -1.67 -8.77 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.11 0.68 7.96 -2.38 -0.02 0.66 16 34 H 0.11 0.79 8.06 -2.39 -0.02 0.77 16 35 H 0.42 6.25 8.00 -92.70 -0.74 5.51 16 36 H 0.41 12.59 7.94 -92.71 -0.74 11.85 16 37 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 38 H 0.07 2.31 8.08 -2.39 -0.02 2.29 16 39 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 40 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 42 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 43 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.08 7.93 -2.39 -0.02 1.06 16 Total: -1.00 -62.02 382.38 0.11 -61.91 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.45 Total: 37.64 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 4.86 Total: -18.52 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -4.55 Total: -78.97 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.78 Total: -41.51 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -62.02 0.11 -61.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349274091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.036 kcal (2) G-P(sol) polarization free energy of solvation -62.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds