Wall clock time and date at job start Tue Mar 31 2020 17:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.54855 * 2 1 4 4 C 1.55002 * 110.61474 * 237.12537 * 2 1 3 5 5 C 1.54806 * 102.09156 * 204.47244 * 4 2 1 6 6 H 1.08998 * 110.48869 * 262.20684 * 5 4 2 7 7 N 1.46497 * 110.48773 * 139.55504 * 5 4 2 8 8 C 1.34776 * 120.00190 * 158.78454 * 7 5 4 9 9 O 1.21355 * 119.99679 * 359.97438 * 8 7 5 10 10 C 1.49447 * 120.00419 * 180.02562 * 8 7 5 11 11 O 1.21349 * 119.99858 * 359.97438 * 10 8 7 12 12 N 1.34779 * 120.00162 * 179.97438 * 10 8 7 13 13 C 1.46497 * 119.99933 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47227 * 180.02562 * 13 12 10 15 15 C 1.38632 * 119.74921 * 269.73075 * 14 13 12 16 16 C 1.37619 * 120.24450 * 179.72228 * 15 14 13 17 17 C 1.40714 * 119.74616 * 0.51969 * 16 15 14 18 18 C 1.41400 * 120.24410 * 179.72433 * 17 16 15 19 19 H 1.07997 * 119.99393 * 24.40747 * 18 17 16 20 20 C 1.39939 * 120.00132 * 204.40398 * 18 17 16 21 21 N 1.30829 * 119.99987 * 17.85480 * 20 18 17 22 22 Si 1.86802 * 120.00210 * 197.85272 * 20 18 17 23 23 H 1.48504 * 109.46980 * 90.00032 * 22 20 18 24 24 H 1.48500 * 109.47266 * 210.00061 * 22 20 18 25 25 H 1.48505 * 109.46979 * 330.00137 * 22 20 18 26 26 C 1.40714 * 119.51162 * 359.75704 * 17 16 15 27 27 C 1.37618 * 119.74621 * 359.97438 * 26 17 16 28 28 C 1.54106 * 104.18682 * 20.88105 * 5 4 2 29 29 O 1.43740 * 107.42029 * 1.95122 * 28 5 4 30 30 H 1.08999 * 109.47043 * 182.88145 * 1 2 3 31 31 H 1.09003 * 109.46694 * 302.87612 * 1 2 3 32 32 H 1.09000 * 109.47464 * 62.87413 * 1 2 3 33 33 H 1.09000 * 110.90992 * 86.27494 * 4 2 1 34 34 H 1.09003 * 110.90725 * 322.67145 * 4 2 1 35 35 H 0.97004 * 120.00381 * 338.77677 * 7 5 4 36 36 H 0.96998 * 119.99741 * 0.02562 * 12 10 8 37 37 H 1.09004 * 109.47112 * 300.00313 * 13 12 10 38 38 H 1.08996 * 109.47222 * 59.99883 * 13 12 10 39 39 H 1.07998 * 119.87749 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.12661 * 180.27349 * 16 15 14 41 41 H 0.97003 * 120.00080 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12405 * 180.02562 * 26 17 16 43 43 H 1.07996 * 119.87797 * 180.02562 * 27 26 17 44 44 H 1.08995 * 109.88245 * 121.45571 * 28 5 4 45 45 H 1.09000 * 109.87551 * 242.45675 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0757 -0.7875 -1.2184 5 6 3.4794 -1.2156 -0.7256 6 1 4.2406 -0.5315 -1.1007 7 7 3.7724 -2.5891 -1.1424 8 6 5.0491 -3.0160 -1.2071 9 8 5.9561 -2.2623 -0.9204 10 6 5.3480 -4.4170 -1.6328 11 8 4.4411 -5.1704 -1.9199 12 7 6.6248 -4.8437 -1.6980 13 6 6.9178 -6.2172 -2.1148 14 6 8.4084 -6.4387 -2.1030 15 6 9.1507 -6.1838 -3.2457 16 6 10.5133 -6.3771 -3.2446 17 6 11.1510 -6.8456 -2.0811 18 6 12.5496 -7.0535 -2.0700 19 1 13.1812 -6.5132 -2.7597 20 6 13.1153 -7.9591 -1.1655 21 7 12.3636 -8.8575 -0.5829 22 14 14.9437 -7.8853 -0.7900 23 1 15.1766 -6.9742 0.3594 24 1 15.4348 -9.2451 -0.4512 25 1 15.6733 -7.3776 -1.9797 26 6 10.3866 -7.1064 -0.9288 27 6 9.0261 -6.9007 -0.9510 28 6 3.3839 -1.1267 0.8099 29 8 2.0397 -0.7353 1.1356 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3633 0.5579 0.8631 32 1 -0.3634 0.4685 -0.9146 33 1 2.1508 -0.1444 -2.0953 34 1 1.4549 -1.6584 -1.4285 35 1 3.0474 -3.1915 -1.3718 36 1 7.3497 -4.2415 -1.4681 37 1 6.4416 -6.9152 -1.4261 38 1 6.5337 -6.3811 -3.1215 39 1 8.6585 -5.8284 -4.1389 40 1 11.0903 -6.1738 -4.1346 41 1 12.7558 -9.4855 0.0438 42 1 10.8659 -7.4659 -0.0303 43 1 8.4374 -7.0998 -0.0678 44 1 3.6045 -2.0982 1.2519 45 1 4.0873 -0.3819 1.1825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349274094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:34 Heat of formation + Delta-G solvation = -105.408073 kcal Electronic energy + Delta-G solvation = -26945.054139 eV Core-core repulsion = 22926.766958 eV Total energy + Delta-G solvation = -4018.287182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.87353 -39.75750 -38.39548 -37.65484 -35.40557 -34.62319 -33.46418 -32.56118 -30.56223 -30.40337 -29.39958 -27.35064 -26.49424 -25.00110 -23.37235 -21.82304 -21.49287 -21.11963 -20.28213 -20.18986 -18.57718 -17.42240 -17.36131 -16.83439 -16.21484 -15.82853 -15.76447 -15.49041 -15.24753 -14.65823 -14.36474 -14.16209 -13.88967 -13.79735 -13.50192 -13.41345 -12.97164 -12.90638 -12.59657 -12.28457 -12.11743 -12.06164 -11.97739 -11.81050 -11.62503 -11.55418 -11.36534 -11.23088 -11.15590 -10.64423 -10.58048 -10.18143 -9.78953 -9.60381 -9.50962 -9.46988 -9.25759 -8.90562 -7.60758 -7.49602 -6.89765 -4.49577 1.42704 2.20857 2.65827 2.95890 3.00860 3.04152 3.07819 3.22559 3.41158 3.74409 3.83714 3.98121 4.28006 4.44397 4.49032 4.58098 4.66981 4.76596 4.87804 5.12470 5.18640 5.28504 5.37435 5.47784 5.55078 5.55601 5.68412 5.69812 5.78787 5.99953 6.13600 6.20067 6.29578 6.45131 6.51310 6.83646 6.89382 6.94916 7.14254 7.22872 7.44390 7.47922 7.68110 7.79553 7.92751 7.96751 8.10847 8.16631 8.50848 8.75706 8.83263 10.04176 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.001837 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.895552 B =15235.620782 C =15637.820241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.075 0.925 4 C -0.157 4.157 5 C 0.111 3.889 6 H 0.108 0.892 7 N -0.698 5.698 8 C 0.508 3.492 9 O -0.515 6.515 10 C 0.498 3.502 11 O -0.534 6.534 12 N -0.681 5.681 13 C 0.182 3.818 14 C -0.252 4.252 15 C -0.067 4.067 16 C -0.229 4.229 17 C 0.117 3.883 18 C -0.456 4.456 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.785 5.785 22 Si 0.910 3.090 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.169 4.169 27 C -0.079 4.079 28 C 0.036 3.964 29 O -0.372 6.372 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.413 0.587 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.283 0.717 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 13.696 0.665 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.093 0.907 4 C -0.195 4.195 5 C 0.006 3.994 6 H 0.126 0.874 7 N -0.353 5.353 8 C 0.289 3.711 9 O -0.390 6.390 10 C 0.277 3.723 11 O -0.412 6.412 12 N -0.332 5.332 13 C 0.061 3.939 14 C -0.254 4.254 15 C -0.086 4.086 16 C -0.249 4.249 17 C 0.115 3.885 18 C -0.485 4.485 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.410 5.410 22 Si 0.735 3.265 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.189 4.189 27 C -0.098 4.098 28 C -0.042 4.042 29 O -0.291 6.291 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.251 0.749 36 H 0.249 0.751 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.681 13.415 1.013 22.217 hybrid contribution 1.038 -0.103 0.018 1.044 sum -16.643 13.311 1.031 21.336 Atomic orbital electron populations 1.21778 0.92728 1.03260 1.02638 1.23152 0.95614 0.95426 0.84429 0.90710 1.23496 0.94817 1.01837 0.99395 1.22450 0.98261 0.83833 0.94869 0.87427 1.45821 1.08075 1.13557 1.67810 1.20523 0.83377 0.88845 0.78362 1.90781 1.44962 1.56214 1.47023 1.20006 0.84570 0.87497 0.80190 1.90736 1.45142 1.56188 1.49169 1.46502 1.06660 1.15741 1.64335 1.20132 0.94339 0.80077 0.99341 1.18906 0.92273 1.17538 0.96635 1.20404 0.94110 0.98401 0.95666 1.20961 0.93544 1.12581 0.97807 1.17694 0.93245 0.87432 0.90166 1.19689 0.92577 1.20240 1.16023 0.90167 1.25969 1.00861 0.93509 0.94036 1.69823 1.38210 1.11676 1.21275 0.86271 0.81883 0.78429 0.79958 1.19134 1.20200 1.18502 1.21315 0.92498 1.06007 0.99061 1.20557 0.95065 0.98601 0.95547 1.23639 0.84591 1.01732 0.94210 1.88975 1.27777 1.73617 1.38709 0.91563 0.91640 0.90918 0.88964 0.89312 0.74857 0.75053 0.91621 0.91698 0.89305 0.88804 0.90610 0.86310 0.89307 0.89177 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.66 37.16 0.36 -0.41 16 2 C 0.07 0.48 3.97 -25.67 -0.10 0.37 16 3 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.16 -0.95 6.30 -24.72 -0.16 -1.11 16 5 C 0.11 0.95 3.34 -66.40 -0.22 0.73 16 6 H 0.11 0.96 7.67 -51.93 -0.40 0.56 16 7 N -0.70 -7.10 5.04 -52.76 -0.27 -7.37 16 8 C 0.51 6.80 7.88 -11.59 -0.09 6.71 16 9 O -0.52 -7.95 16.19 5.49 0.09 -7.86 16 10 C 0.50 7.56 7.89 -11.59 -0.09 7.47 16 11 O -0.53 -8.92 16.48 5.50 0.09 -8.83 16 12 N -0.68 -10.88 5.54 -61.91 -0.34 -11.22 16 13 C 0.18 3.16 5.79 -5.19 -0.03 3.13 16 14 C -0.25 -5.13 5.27 -104.33 -0.55 -5.68 16 15 C -0.07 -1.41 9.67 -39.66 -0.38 -1.80 16 16 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 17 C 0.12 3.00 5.58 -106.82 -0.60 2.41 16 18 C -0.46 -11.65 9.05 -37.74 -0.34 -11.99 16 19 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 20 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 21 N -0.79 -19.57 10.95 55.55 0.61 -18.97 16 22 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 27 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 28 C 0.04 0.34 7.49 37.74 0.28 0.62 16 29 O -0.37 -3.64 11.24 -35.23 -0.40 -4.03 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.51 7.66 -51.93 -0.40 0.11 16 35 H 0.41 3.79 7.82 -40.82 -0.32 3.47 16 36 H 0.41 6.62 7.94 -40.82 -0.32 6.30 16 37 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 38 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 41 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 42 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -28.42 382.13 -8.97 -37.39 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -6.37 Total: 12.39 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -3.11 Total: -10.24 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.00 Total: -37.56 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.22 Total: -20.72 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.42 -8.97 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349274094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.013 kcal (2) G-P(sol) polarization free energy of solvation -28.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds